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1.
Molecular Ecology Resources Primer Development Consortium Arias MC Arnoux E Bell JJ Bernadou A Bino G Blatrix R Bourguet D Carrea C Clamens AL Cunha HA d'Alençon E Ding Y Djieto-Lordon C Dubois MP Dumas P Eraud C Faivre B Francisco FO Françoso E Garcia M Gardner JP Garnier S Gimenez S Gold JR Harris DJ He G Hellemans B Hollenbeck CM Jing S Kergoat GJ Liu B McDowell JR McKey D Miller TL Newton E Pagenkopp Lohan KM Papetti C Paterson I Peccoud J Peng X Piatscheck F Ponsard S Reece KS Reisser CM 《Molecular ecology resources》2012,12(3):570-572
This article documents the addition of 473 microsatellite marker loci and 71 pairs of single‐nucleotide polymorphism (SNP) sequencing primers to the Molecular Ecology Resources Database. Loci were developed for the following species: Barteria fistulosa, Bombus morio, Galaxias platei, Hematodinium perezi, Macrocentrus cingulum Brischke (a.k.a. M. abdominalis Fab., M. grandii Goidanich or M. gifuensis Ashmead), Micropogonias furnieri, Nerita melanotragus, Nilaparvata lugens Stål, Sciaenops ocellatus, Scomber scombrus, Spodoptera frugiperda and Turdus lherminieri. These loci were cross‐tested on the following species: Barteria dewevrei, Barteria nigritana, Barteria solida, Cynoscion acoupa, Cynoscion jamaicensis, Cynoscion leiarchus, Cynoscion nebulosus, Cynoscion striatus, Cynoscion virescens, Macrodon ancylodon, Menticirrhus americanus, Nilaparvata muiri and Umbrina canosai. This article also documents the addition of 116 sequencing primer pairs for Dicentrarchus labrax. 相似文献
2.
Molecular Ecology Resources Primer Development Consortium Abreu AG Albaina A Alpermann TJ Apkenas VE Bankhead-Dronnet S Bergek S Berumen ML Cho CH Clobert J Coulon A DE Feraudy D Estonba A Hankeln T Hochkirch A Hsu TW Huang TJ Irigoien X Iriondo M Kay KM Kinitz T Kothera L LE Hénanff M Lieutier F Lourdais O Macrini CM Manzano C Martin C Morris VR Nanninga G Pardo MA Plieske J Pointeau S Prestegaard T Quack M Richard M Savage HM Schwarcz KD Shade J Simms EL Solferini VN Stevens VM Veith M Wen MJ 《Molecular ecology resources》2012,12(2):374-376
This article documents the addition of 139 microsatellite marker loci and 90 pairs of single‐nucleotide polymorphism sequencing primers to the Molecular Ecology Resources Database. Loci were developed for the following species: Aglaoctenus lagotis, Costus pulverulentus, Costus scaber, Culex pipiens, Dascyllus marginatus, Lupinus nanus Benth, Phloeomyzus passerini, Podarcis muralis, Rhododendron rubropilosum Hayata var. taiwanalpinum and Zoarces viviparus. These loci were cross‐tested on the following species: Culex quinquefasciatus, Rhododendron pseudochrysanthum Hay. ssp. morii (Hay.) Yamazaki and R. pseudochrysanthum Hayata. This article also documents the addition of 48 sequencing primer pairs and 90 allele‐specific primers for Engraulis encrasicolus. 相似文献
3.
Molecular Ecology Resources Primer Development Consortium Andris M Arias MC Barthel BL Bluhm BH Bried J Canal D Chen XM Cheng P Chiappero MB Coelho MM Collins AB Dash M Davis MC Duarte M Dubois MP Françoso E Galmes MA Gopal K Jarne P Kalbe M Karczmarski L Kim H Martella MB McBride RS Negri V Negro JJ Newell AD Piedade AF Puchulutegui C Raggi L Samonte IE Sarasola JH See DR Seyoum S Silva MC Solaro C Tolley KA Tringali MD Vasemägi A Xu LS Zanón-Martínez JI 《Molecular ecology resources》2012,12(4):779-781
This article documents the addition of 171 microsatellite marker loci and 27 pairs of single nucleotide polymorphism (SNP) sequencing primers to the Molecular Ecology Resources Database. Loci were developed for the following species: Bombus pauloensis, Cephalorhynchus heavisidii, Cercospora sojina, Harpyhaliaetus coronatus, Hordeum vulgare, Lachnolaimus maximus, Oceanodroma monteiroi, Puccinia striiformis f. sp. tritici, Rhea americana, Salmo salar, Salmo trutta, Schistocephalus solidus, Sousa plumbea and Tursiops aduncus. These loci were cross-tested on the following species: Aquila heliaca, Bulweria bulwerii, Buteo buteo, Buteo swainsoni, Falco rusticolus, Haliaeetus albicilla, Halobaena caerulea, Hieraaetus fasciatus, Oceanodroma castro, Puccinia graminis f. sp. Tritici, Puccinia triticina, Rhea pennata and Schistocephalus pungitii. This article also documents the addition of 27 sequencing primer pairs for Puffinus baroli and Bulweria bulwerii and cross-testing of these loci in Oceanodroma castro, Pelagodroma marina, Pelecanoides georgicus, Pelecanoides urinatrix, Thalassarche chrysostoma and Thalassarche melanophrys. 相似文献
4.
Ashoktaru Barat S. P. Bravo Suresh Chandra A. S. Corrêa M. I. Giombini R. N. C. Guedes Ma Huailei Kuldeep K. Lal Lu Liang Rakesh Matura Vindhya Mohindra L. O. Oliveira Ruchi Patangia Liu Qiyong Rama Shankar Sah Akanksha Singh Birender Kumar Singh Rajeev K. Singh D. S. Tosto Ratnesh K. Tripathi C. C. Vinson 《Molecular ecology resources》2012,12(6):1196-1197
This article documents the addition of 96 microsatellite marker loci to the Molecular Ecology Resources Database. Loci were developed for the following species: Clarias batrachus, Marmota himalayana, Schizothorax richardsonii, Sitophilus zeamais and Syagrus romanzoffiana. These loci were cross‐tested on the following species: Clarias dussumeri, Clarias gariepinus, Heteropneustus fossilis, Sitophilus granarius and Sitophilus oryzae. 相似文献
5.
Molecular Ecology Resources Primer Development Consortium Barker FK Bell JJ Bogdanowicz SM Bonatto SL Cezilly F Collins SM Dubreuil C Dufort MJ Eraud C Fuseya R Heap EA Jacobsen N Madders M McEwing R Michel AP Mougeot F Ogden RS Orantes LC Othman AS Parent E Pulido-Santacruz P Rioux-Paré R Roberts MF Rosazlina R Sakamoto T De-León PS Sévigny JM St-Onge P Terraube J Tingay RE Tremblay R Watanabe S Wattier RA 《Molecular ecology resources》2011,11(6):1124-1126
This article documents the addition of 112 microsatellite marker loci and 24 pairs of single nucleotide polymorphism (SNP) sequencing primers to the Molecular Ecology Resources Database. Loci were developed for the following species: Agelaius phoeniceus, Austrolittorina cincta, Circus cyaneus, Circus macrourus, Circus pygargus, Cryptocoryne × purpurea Ridl. nothovar. purpurea, Mya arenaria, Patagioenas squamosa, Prochilodus mariae, Scylla serrata and Scytalopus speluncae. These loci were cross-tested on the following species: Cryptocoryne × purpurea nothovar. purpurea, Cryptocoryne affinis, Cryptocoryne ciliata, Cryptocoryne cordata var. cordata, Cryptocoryne elliptica, Cryptocoryne griffithii, Cryptocoryne minima, Cryptocoryne nurii and Cryptocoryne schulzei. This article also documents the addition of 24 sequencing primer pairs and 24 allele-specific primers or probes for Aphis glycines. 相似文献
6.
Molecular Ecology Resources Primer Development Consortium An J Bechet A Berggren A Brown SK Bruford MW Cai Q Cassel-Lundhagen A Cezilly F Chen SL Cheng W Choi SK Ding XY Fan Y Feldheim KA Feng ZY Friesen VL Gaillard M Galaraza JA Gallo L Ganeshaiah KN Geraci J Gibbons JG Grant WS Grauvogel Z Gustafsson S Guyon JR Han L Heath DD Hemmilä S Hogan JD Hou BW Jakse J Javornik B Kaňuch P Kim KK Kim KS Kim SG Kim SI Kim WJ Kim YK Klich MA Kreiser BR Kwan YS Lam AW Lasater K Lascoux M Lee H Lee YS Li DL 《Molecular ecology resources》2010,10(2):404-408
This article documents the addition of 411 microsatellite marker loci and 15 pairs of Single Nucleotide Polymorphism (SNP) sequencing primers to the Molecular Ecology Resources Database. Loci were developed for the following species: Acanthopagrus schlegeli, Anopheles lesteri, Aspergillus clavatus, Aspergillus flavus, Aspergillus fumigatus, Aspergillus oryzae, Aspergillus terreus, Branchiostoma japonicum, Branchiostoma belcheri, Colias behrii, Coryphopterus personatus, Cynogolssus semilaevis, Cynoglossus semilaevis, Dendrobium officinale, Dendrobium officinale, Dysoxylum malabaricum, Metrioptera roeselii, Myrmeciza exsul, Ochotona thibetana, Neosartorya fischeri, Nothofagus pumilio, Onychodactylus fischeri, Phoenicopterus roseus, Salvia officinalis L., Scylla paramamosain, Silene latifo, Sula sula, and Vulpes vulpes. These loci were cross-tested on the following species: Aspergillus giganteus, Colias pelidne, Colias interior, Colias meadii, Colias eurytheme, Coryphopterus lipernes, Coryphopterus glaucofrenum, Coryphopterus eidolon, Gnatholepis thompsoni, Elacatinus evelynae, Dendrobium loddigesii Dendrobium devonianum, Dysoxylum binectariferum, Nothofagus antarctica, Nothofagus dombeyii, Nothofagus nervosa, Nothofagus obliqua, Sula nebouxii, and Sula variegata. This article also documents the addition of 39 sequencing primer pairs and 15 allele specific primers or probes for Paralithodes camtschaticus. 相似文献
7.
Molecular Ecology Resources Primer Development Consortium Abdoullaye D Acevedo I Adebayo AA Behrmann-Godel J Benjamin RC Bock DG Born C Brouat C Caccone A Cao LZ Casado-Amezúa P Catanéo J Correa-Ramirez MM Cristescu ME Dobigny G Egbosimba EE Etchberger LK Fan B Fields PD Forcioli D Furla P Garcia de Leon FJ García-Jiménez R Gauthier P Gergs R González C Granjon L Gutiérrez-Rodríguez C Havill NP Helsen P Hether TD Hoffman EA Hu X Ingvarsson PK Ishizaki S Ji H Ji XS Jimenez ML Kapil R Karban R 《Molecular ecology resources》2010,10(1):232-236
This article documents the addition of 238 microsatellite marker loci and 72 pairs of Single Nucleotide Polymorphism (SNP) sequencing primers to the Molecular Ecology Resources Database. Loci were developed for the following species: Adelges tsugae, Artemisia tridentata, Astroides calycularis, Azorella selago, Botryllus schlosseri, Botrylloides violaceus, Cardiocrinum cordatum var. glehnii, Campylopterus curvipennis, Colocasia esculenta, Cynomys ludovicianus, Cynomys leucurus, Cynomys gunnisoni, Epinephelus coioides, Eunicella singularis, Gammarus pulex, Homoeosoma nebulella, Hyla squirella, Lateolabrax japonicus, Mastomys erythroleucus, Pararge aegeria, Pardosa sierra, Phoenicopterus ruber ruber and Silene latifolia. These loci were cross-tested on the following species: Adelges abietis, Adelges cooleyi, Adelges piceae, Pineus pini, Pineus strobi, Tubastrea micrantha, three other Tubastrea species, Botrylloides fuscus, Botrylloides simodensis, Campylopterus hemileucurus, Campylopterus rufus, Campylopterus largipennis, Campylopterus villaviscensio, Phaethornis longuemareus, Florisuga mellivora, Lampornis amethystinus, Amazilia cyanocephala, Archilochus colubris, Epinephelus lanceolatus, Epinephelus fuscoguttatus, Symbiodinium temperate-A clade, Gammarus fossarum, Gammarus roeselii, Dikerogammarus villosus and Limnomysis benedeni. This article also documents the addition of 72 sequencing primer pairs and 52 allele specific primers for Neophocaena phocaenoides. 相似文献
8.
Molecular Ecology Resources Primer Development Consortium Almany GR DE Arruda MP Arthofer W Atallah ZK Beissinger SR Berumen ML Bogdanowicz SM Brown SD Bruford MW Burdine C Busch JW Campbell NR Carey D Carstens BC Chu KH Cubeta MA Cuda JP Cui Z Datnoff LE Dávila JA Davis ES Davis RM Diekmann OE Eizirik E Fargallo JA Fernandes F Fukuda H Gale LR Gallagher E Gao Y Girard P Godhe A Gonçalves EC Gouveia L Grajczyk AM Grose MJ Gu Z Halldén C Härnström K Hemmingsen AH Holmes G Huang CH Huang CC 《Molecular ecology resources》2009,9(6):1460-1466
This article documents the addition of 512 microsatellite marker loci and nine pairs of Single Nucleotide Polymorphism (SNP) sequencing primers to the Molecular Ecology Resources Database. Loci were developed for the following species: Alcippe morrisonia morrisonia, Bashania fangiana, Bashania fargesii, Chaetodon vagabundus, Colletes floralis, Coluber constrictor flaviventris, Coptotermes gestroi, Crotophaga major, Cyprinella lutrensis, Danaus plexippus, Fagus grandifolia, Falco tinnunculus, Fletcherimyia fletcheri, Hydrilla verticillata, Laterallus jamaicensis coturniculus, Leavenworthia alabamica, Marmosops incanus, Miichthys miiuy, Nasua nasua, Noturus exilis, Odontesthes bonariensis, Quadrula fragosa, Pinctada maxima, Pseudaletia separata, Pseudoperonospora cubensis, Podocarpus elatus, Portunus trituberculatus, Rhagoletis cerasi, Rhinella schneideri, Sarracenia alata, Skeletonema marinoi, Sminthurus viridis, Syngnathus abaster, Uroteuthis (Photololigo) chinensis, Verticillium dahliae, Wasmannia auropunctata, and Zygochlamys patagonica. These loci were cross-tested on the following species: Chaetodon baronessa, Falco columbarius, Falco eleonorae, Falco naumanni, Falco peregrinus, Falco subbuteo, Didelphis aurita, Gracilinanus microtarsus, Marmosops paulensis, Monodelphis Americana, Odontesthes hatcheri, Podocarpus grayi, Podocarpus lawrencei, Podocarpus smithii, Portunus pelagicus, Syngnathus acus, Syngnathus typhle,Uroteuthis (Photololigo) edulis, Uroteuthis (Photololigo) duvauceli and Verticillium albo-atrum. This article also documents the addition of nine sequencing primer pairs and sixteen allele specific primers or probes for Oncorhynchus mykiss and Oncorhynchus tshawytscha; these primers and assays were cross-tested in both species. 相似文献
9.
M. C. Arias Christiane Atteke S. C. Augusto J. Bailey Pilar Bazaga Luciano B. Beheregaray Laure Benoit Rumsaïs Blatrix Céline Born R. M. Brito Hai‐kui Chen Sara Covarrubias Clara de Vega Champlain Djiéto‐Lordon Marie‐Pierre Dubois F. O. Francisco Cristina García P. H. P. Gonçalves Clementina González Carla Gutiérrez‐Rodríguez Michael P. Hammer Carlos M. Herrera H. Itoh S. Kamimura H. Karaoglu S. Kojima Shou‐Li Li Hannah J. Ling Pável F. Matos‐Maraví Doyle McKey Judicaël Mezui‐M'Eko Juan Francisco Ornelas R. F. Park María I. Pozo Satu Ramula Cristina Rigueiro Jonathan Sandoval‐Castillo L. R. Santiago Miyuki M. Seino Chang‐Bing Song H. Takeshima Anti Vasemägi C. R. Wellings Ji Yan Du Yu‐Zhou Chang‐Rong Zhang Tian‐Yun Zhang 《Molecular ecology resources》2013,13(4):760-762
This article documents the addition of 142 microsatellite marker loci to the Molecular Ecology Resources database. Loci were developed for the following species: Agriophyllum squarrosum, Amazilia cyanocephala, Batillaria attramentaria, Fungal strain CTeY1 (Ascomycota), Gadopsis marmoratus, Juniperus phoenicea subsp. turbinata, Liriomyza sativae, Lupinus polyphyllus, Metschnikowia reukaufii, Puccinia striiformis and Xylocopa grisescens. These loci were cross‐tested on the following species: Amazilia beryllina, Amazilia candida, Amazilia rutila, Amazilia tzacatl, Amazilia violiceps, Amazilia yucatanensis, Campylopterus curvipennis, Cynanthus sordidus, Hylocharis leucotis, Juniperus brevifolia, Juniperus cedrus, Juniperus osteosperma, Juniperus oxycedrus, Juniperus thurifera, Liriomyza bryoniae, Liriomyza chinensis, Liriomyza huidobrensis and Liriomyza trifolii. 相似文献
10.
Molecular Ecology Resources Primer Development Consortium A'Hara SW Amouroux P Argo EE Avand-Faghih A Barat A Barbieri L Bert TM Blatrix R Blin A Bouktila D Broome A Burban C Capdevielle-Dulac C Casse N Chandra S Cho KJ Cottrell JE Crawford CR Davis MC Delatte H Desneux N Djieto-Lordon C Dubois MP El-Mergawy RA Gallardo-Escárate C Garcia M Gardiner MM Guillemaud T Haye PA Hellemans B Hinrichsen P Jeon JH Kerdelhué C Kharrat I Kim KH Kim YY Kwan YS Labbe EM LaHood E Lee KM Lee WO Lee YH Legoff I 《Molecular ecology resources》2012,12(1):185-189
This article documents the addition of 299 microsatellite marker loci and nine pairs of single-nucleotide polymorphism (SNP) EPIC primers to the Molecular Ecology Resources (MER) Database. Loci were developed for the following species: Alosa pseudoharengus, Alosa aestivalis, Aphis spiraecola, Argopecten purpuratus, Coreoleuciscus splendidus, Garra gotyla, Hippodamia convergens, Linnaea borealis, Menippe mercenaria, Menippe adina, Parus major, Pinus densiflora, Portunus trituberculatus, Procontarinia mangiferae, Rhynchophorus ferrugineus, Schizothorax richardsonii, Scophthalmus rhombus, Tetraponera aethiops, Thaumetopoea pityocampa, Tuta absoluta and Ugni molinae. These loci were cross-tested on the following species: Barilius bendelisis, Chiromantes haematocheir, Eriocheir sinensis, Eucalyptus camaldulensis, Eucalyptus cladocalix, Eucalyptus globulus, Garra litaninsis vishwanath, Garra para lissorhynchus, Guindilla trinervis, Hemigrapsus sanguineus, Luma chequen. Guayaba, Myrceugenia colchagüensis, Myrceugenia correifolia, Myrceugenia exsucca, Parasesarma plicatum, Parus major, Portunus pelagicus, Psidium guayaba, Schizothorax richardsonii, Scophthalmus maximus, Tetraponera latifrons, Thaumetopoea bonjeani, Thaumetopoea ispartensis, Thaumetopoea libanotica, Thaumetopoea pinivora, Thaumetopoea pityocampa ena clade, Thaumetopoea solitaria, Thaumetopoea wilkinsoni and Tor putitora. This article also documents the addition of nine EPIC primer pairs for Euphaea decorata, Euphaea formosa, Euphaea ornata and Euphaea yayeyamana. 相似文献
11.
Permanent Genetic Resources added to Molecular Ecology Resources Database 1 April 2012 - 31 May 2012
Molecular Ecology Resources Primer Development Consortium P Abelló W Ai C Altmann G Bernardi O Bonato KM Burchhardt X Chen Z Chen D Cížková C Clouet MA Cubeta V Garcia-Merchan N Gauthier S Gibson K Halačka F Hamdi T Hankeln A Hochkirch T Hrbek AM Jackson C Lin SM Lin E Macpherson J Macrander E Marešová J Mendel M Nowak G Orti F Palero I Papoušek M Pascual T Schmitt BX Semmens JC Streito EW Tian SP Tseng M Veith L Vetešník HY Wang J Weyer S Willis H Yu Z Zhou 《Molecular ecology resources》2012,12(5):972-974
This article documents the addition of 123 microsatellite marker loci to the Molecular Ecology Resources Database. Loci were developed for the following species: Brenthis ino, Cichla orinocensis, Cichla temensis, Epinephelus striatus, Gobio gobio, Liocarcinus depurator, Macrolophus pygmaeus, Monilinia vaccinii-corymbosi, Pelochelys cantorii, Philotrypesis josephi, Romanogobio vladykovi, Takydromus luyeanus and Takydromus viridipunctatus. These loci were cross-tested on the following species: Cichla intermedia, Cichla ocellaris, Cichla pinima, Epinephelus acanthistius, Gobio carpathicus, Gobio obtusirostris, Gobio sp. 1, Gobio volgensis, Macrolophus costalis, Macrolophus melanotoma, Macrolophus pygmaeus, Romanogobio albipinnatus, Romanogobio banaticus, Romanogobio belingi, Romanogobio kesslerii, Romanogobio parvus, Romanogobio pentatrichus, Romanogobio uranoscopus, Takydromus formosanus, Takydromus hsuehshanesis and Takydromus stejnegeri. 相似文献
12.
Molecular Ecology Resources Primer Development Consortium Bonizzoni M Bourjea J Chen B Crain BJ Cui L Fiorentino V Hartmann S Hendricks S Ketmaier V Ma X Muths D Pavesi L Pfautsch S Rieger MA Santonastaso T Sattabongkot J Taron CH Taron DJ Tiedemann R Yan G Zheng B Zhong D 《Molecular ecology resources》2011,11(5):935-936
This article documents the addition of 92 microsatellite marker loci to the Molecular Ecology Resources Database. Loci were developed for the following species: Anopheles minimus, An. sinensis, An. dirus, Calephelis mutica, Lutjanus kasmira, Murella muralis and Orchestia montagui. These loci were cross-tested on the following species: Calephelis arizonensi, Calephelis borealis, Calephelis nemesis, Calephelis virginiensis and Lutjanus bengalensis. 相似文献
13.
A. Gopalakrishnan P. M. Abdul Muneer K. K. Musammilu K. K. Lal D. Kapoor V. Mohindra 《Zeitschrift fur angewandte Ichthyologie》2006,22(5):456-458
Horabagrus brachysoma (sun‐catfish, Bagridae, Siluriformes) is a valuable ornamental and food fish. The stock structure of H. brachysoma, necessary to conserve its declining natural populations, is not known. Twenty‐five primers developed for four fish species belonging to the orders Siluriform (3) and Osteoglossiform (1) were tested and eight primers amplified microsatellite loci in H. brachysoma. The results demonstrate that cross‐priming between fish species belonging to different families and even to different orders can yield microsatellite loci. Five of eight primers each amplified two loci. However, the loci that had repeat motifs after sequencing were considered only for genotyping. Finally, eight loci were polymorphic with hree to seven alleles. Individual fish genotype data (n = 42; 21 each in two rivers) at each locus was analysed. Significant genetic heterogeneity was detected at six loci. The identified loci exhibited potential for use in population genetics application in H. brachysoma. 相似文献
14.
JESSICA STAPLEY CHRISTINE M. HAYES JONATHAN K. WEBB J. SCOTT KEOGH 《Molecular ecology resources》2005,5(1):54-56
A total of 15 microsatellite primers pairs were developed for the Australian small‐eyed snake Rhinoplocephalus nigrescens. Five primers were used to screen 93 individuals of R. nigrescens and were also tested against eight species of the closely related genus Suta. Allelic diversity in R. nigrescens was high in three loci (12–27) and there was high heterozygosity (0.58–0.82). Observed heterozygosity did not deviate from Hardy–Weinberg expectations for the five loci tested. These primers will be useful in studies of population genetics and mating systems of small‐eyed snakes and related species. 相似文献
15.
Molecular Ecology Resources Primer Development Consortium Aurelle D Baker AJ Bottin L Brouat C Caccone A Chaix A Dhakal P Ding Y Duplantier JM Fiedler W Fietz J Fong Y Forcioli D Freitas TR Gunnarsson GH Haddrath O Hadziabdic D Hauksdottir S Havill NP Heinrich M Heinz T Hjorleifsdottir S Hong Y Hreggvidsson GO Huchette S Hurst J Kane M Kane NC Kawakami T Ke W Keith RA Klauke N Klein JL Kun JF Li C Li GQ Li JJ Loiseau A Lu LZ Lucas M Martins-Ferreira C Mokhtar-Jamaï K Olafsson K Pampoulie C 《Molecular ecology resources》2010,10(4):751-754
This article documents the addition of 228 microsatellite marker loci to the Molecular Ecology Resources Database. Loci were developed for the following species: Anser cygnoides, Apodemus flavicollis, Athene noctua, Cercis canadensis, Glis glis, Gubernatrix cristata, Haliotis tuberculata, Helianthus maximiliani, Laricobius nigrinus, Laricobius rubidus, Neoheligmonella granjoni, Nephrops norvegicus, Oenanthe javanica, Paramuricea clavata, Pyrrhura orcesi and Samanea saman. These loci were cross-tested on the following species: Apodemus sylvaticus, Laricobius laticollis and Laricobius osakensis (a proposed new species currently being described). 相似文献
16.
We developed microsatellite markers in American yam (Dioscorea trifida). A microsatellite sequence‐enriched genomic library was screened, and after sequencing, primers were designed for 20 microsatellites. Among these, eight primer pairs yielded amplification products that were both interpretable and polymorphic in 24 yam cultivars. The number of alleles per locus ranged from two to 13 and the overall expected heterozygosity was around 0.5. Six of the eight Dioscorea trifida microsatellite loci gave amplification products in other Dioscorea species. 相似文献
17.
Genomic Resources Development Consortium Stephen R. Keller David M. Nelson Cortney Pylant Scott R. Santos Regina Trott 《Molecular ecology resources》2014,14(2):435-436
This article documents the public availability of (i) genomic sequence data and 43 microsatellite loci for the bat species, Lasiurus borealis and Lasiurus cinereus, and (ii) complete mitochondrial and partial nuclear genomes for two jack species, Caranx ignobilis, Caranx melampygus. 相似文献
18.
Reconstructing the plant mitochondrial genome for marker discovery: a case study using Pinus 下载免费PDF全文
Kevin Donnelly Joan Cottrell Richard A. Ennos Giovanni Giuseppe Vendramin Stuart A'Hara Sarah King Annika Perry Witold Wachowiak Stephen Cavers 《Molecular ecology resources》2017,17(5):943-954
Whole‐genome‐shotgun (WGS) sequencing of total genomic DNA was used to recover ~1 Mbp of novel mitochondrial (mtDNA) sequence from Pinus sylvestris (L.) and three members of the closely related Pinus mugo species complex. DNA was extracted from megagametophyte tissue from six mother trees from locations across Europe, and 100‐bp paired‐end sequencing was performed on the Illumina HiSeq platform. Candidate mtDNA sequences were identified by their size and coverage characteristics, and by comparison with published plant mitochondrial genomes. Novel variants were identified, and primers targeting these loci were trialled on a set of 28 individuals from across Europe. In total, 31 SNP loci were successfully resequenced, characterizing 15 unique haplotypes. This approach offers a cost‐effective means of developing marker resources for mitochondrial genomes in other plant species where reference sequences are unavailable. 相似文献
19.
This paper reports the development of microsatellite primers for a widespread birch species Betula pendula. By screening genomic libraries with (TC)10 and (TG)10 probes, 38 microsatellite sequences were obtained, of which 23 proved to be polymorphic. Thirty genotyped individuals had two to 20 alleles per loci and a heterozygosity range of 0.17–0.92. Cross‐species amplification tests of four primer pairs on diverse birch species showed positive results in all cases. Also, one of two loci tested on related genus Alnus gave positive result. 相似文献
20.
Nine microsatellite primers were developed for Yponomeuta padellus (Lepidoptera: Yponomeutidae) and tested for their applicability in analysing genetic population structure. Eight of the nine loci were highly polymorphic with on average 11.4 alleles. Cross‐species amplification of the nine primer pairs was tested in five other moth species. Primer pairs amplified in Y. cagnagellus, Y. malinellus, Y. evonymellus, and Y. rorellus but not in Y. sedellus and Plutella xylostella. 相似文献