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1.
Red algae of the Bostrychia radicans/B. moritziana complex are common in warm temperate areas of North America. Phylogenetic analysis of both plastid and mitochondrial DNA sequence data revealed seven distinct evolutionary lineages among worldwide samples. Although only two haplotypes (plastid and mitochondrial) were found in Pacific Mexico, four plastid and 11 mitochondrial haplotypes were found in a similar latitudinal spread along the Atlantic coast of the United States. On the U.S. Atlantic coast only one plastid haplotype was found in northern samples (Connecticut to North Carolina), whereas further south several plastid haplotypes were found. Phylogenetic analyses suggested that this single plastid haplotype found among northern samples could be the result of a northward range expansion possibly since the last glacial maximum. Crossing data of samples within the same evolutionary lineage showed that samples with the same plastid haplotypes were generally sexually compatible; samples with different plastid haplotypes were reproductively isolated. Samples from Pacific Mexico were partially reproductively compatible with some samples from the Atlantic USA (plastid haplotype C) and were more closely related to these samples than these U.S. samples were to other U.S. Atlantic samples. Compatible solute types mirrored the plastid haplotype, with plastid haplotype B having only sorbitol, whereas all other haplotypes also contained dulcitol. Samples from Atlantic USA, with different plastid haplotypes (e.g. B vs. C), but within the same evolutionary lineage, were reproductively isolated from each other. Data indicate that reproductive isolation occurs between and within supported evolutionary lineages and that the number of cryptic species is high.  相似文献   

2.
Data from a series of rocky shore transects, within the enclosed basin of the Ranee estuary and immediately outside the barrage, describe the distribution and zonation patterns of the intertidal biota, after more than a decade of its regular operation as a tidal power station. In the absence of quantitative pre-barrage information, the distribution of species has been compared with published information on their former extent of penetration into the estuary.  相似文献   

3.
Photosynthesis and dark respiration rates were measured in water and in air, and the capacity to recover photosynthetic activity from emersion stress was examined for two species of intertidal, epiphytic macroalgae—Bostrychia calliptera (Montagne) Montagne and Caloglossa leprieurii (Montagne) J. Agardh—collected on prop roots of the red mangrove Rhizophora mangle L. in Buenaventura Bay, Pacific coast of Colombia. In both species, net photosynthetic rates were significantly higher under submersed conditions. Maximum photosynthetic rates (Pmax) in water and in air were highest in B. calliptera, 126 ± 4 versus 52 ± 9 μmol O2·mg chl a−1·h−1, respectively. In C. leprieurii, Pmax of submerged plants in water and in air were 98 ± 9 versus 30 ± 11 μmol O2·mg chla−1·h−1. The photoinhibition model of Platt et al. (1980) was used to fit the experimental data in both water and air for both species. Photoinhibition occurred at irradiance as low as 200 μmol·m−2·s−1. The photosynthesis–light response curves demonstrated an adaptation to shaded habitats for both species, as light compensation points in water and air for both species were below 17 ± 5 μmol·m−2·s−1. The rate of dehydration was significantly lower in thalli of B. calliptera compared to C. leprieurii. An increase of photosynthetic activity in B. calliptera was evident between 5% and 15% water loss, but rates decreased thereafter with declining water content. In C. leprieurii, desiccation negatively influenced photosynthetic rates that significantly decreased linearly with declining water content. In B. calliptera, net photosynthesis reached zero only at a water content between 29% and 35%, whereas in C. leprieurii no net photosynthesis occurred in plants containing less than about 50% of their relative water content. Resubmerged plants ofB. calliptera exhibited 100% photosynthetic recovery after 45 min, whereas C. leprieurii recovered 100% at about 120 min. On the basis of the comparison of rates of light-saturated net photosynthesis for B. calliptera in air versus in water, aerial photosynthetic activity ranged from 35% to 42% of that in water, whereas the emersed photosynthetic capacity of C. leprieurii ranged from 24% to 29% of that in water. Using tidal predictions and the emersed photosynthetic rates, a carbon balance model was constructed for both species over a single daylight period. The calculations indicated that emersed photosynthesis increased average daily carbon production of B. calliptera by 17% and C. leprieuri by 12%. The physiological responses to desiccation stress and the photosynthetic recovery capacities between species correlated with, and may determine, their vertical distribution in the mangrove habitats of Buenaventura Bay.  相似文献   

4.
福建红树林区大型藻类的生态学研究   总被引:5,自引:0,他引:5  
主要研究中国福建省红树林区大型藻类分布、优势种的生物量和林冠下藻种的垂直分布特点。结果表明:福建红树林区的大型藻类有24属42种,其中蓝藻8属15种、红藻3属7种、绿藻13属20种。优势种中鹧鸪菜(Caloglossa leprieurii)和节附链藻(Catenella impudica)的生物量在6月分别为2.22~8.44g/m~2 DW和2.69g/m~2 DW,在12月分别为0.15~0.20g/m~2 DW和2.12g/m~2 DW。红树林中树干上附着生长的大型藻类的垂直分布自下而上可分成6个带:1.无隔藻(Vaucheria sp.)带;2、节附链藻带;3.侧枝鹧鸪菜-混合卷枝藻(Caloglossa ogasawaraensis-Bostrychia mixta)带;4.鹧鸪菜带;5.硬毛藻-岸生根枝藻(Chaetomorpha macrotona-Rhizoclonium riparium)带;6.绿球藻(Chlorococcum sp.)带。  相似文献   

5.
C. Wiencke 《Polar Biology》1996,16(4):231-240
 The paper summarizes our present knowledge of Antarctic macroalgae with regard to the following topics: explorative history of Antarctic macroalgae, the environment of macroalgae in the Antarctic, life histories and physiological anatomy, seasonal development, light demands and depth zonation, temperature demands and geographical distribution and the effect of desiccation, salinity and temperature on supra- and eulittoral algae. A baseline is visible, but much more work is necessary, especially to assess the susceptibility of macroalgae and coastal ecosystems in Antarctica to global climatic changes. Received: 29 June 1995/Accepted: 3 October 1995  相似文献   

6.
Aim To infer phylogenetic relationships among Antirrhinum species and to reconstruct the historical distribution of observed sequence polymorphism through estimates of haplotype clades and lineage divergence. Location Antirrhinum is distributed primarily throughout the western Mediterranean, with 22 of 25 species in the Iberian Peninsula. Methods Plastid (83 trnS‐trnG and 83 trnK‐matK) and nuclear (87 ITS) sequences were obtained from 96 individuals representing 24 of the 25 Antirrhinum species. Sequences were analysed using maximum parsimony, Bayesian inference and statistical parsimony networking. Molecular clock estimates were obtained for plastid trnK‐matK sequences using the penalized likelihood approach. Results Phylogenetic results gave limited support for monophyletic groups within Antirrhinum. Fifty‐one plastid haplotypes were detected and 27 missing haplotypes inferred, which were all connected in a single, star‐like network. A significant number of species shared both the same haplotypes and the same geographical areas, primarily in eastern Iberia. Furthermore, many species harboured populations with unrelated haplotypes from divergent haplotype clades. Plastid haplotype distribution, together with nucleotide additivity in 59 of the 86 nuclear ribosomal ITS sequences, is interpreted as evidence of extensive hybridization. Lineage divergence estimates indicated that differentiation within Antirrhinum post‐dates the Miocene, when the Mediterranean climate was established. Main conclusions Incongruence between plastid sequences, nuclear sequences and taxonomic delimitation is interpreted as strong evidence of limited cladogenetic processes in Antirrhinum. Rather, extensive nucleotide additivities in ITS sequences in conjunction with haplotype and haplotype‐clade distributions related to geographical areas support both recent and ancient hybridization. This geographical pattern of Antirrhinum speciation, particularly in eastern Iberia, is congruent with isolation–contact–isolation processes in the Pleistocene.  相似文献   

7.
Two outstanding problems pertaining to the population dynamics and evolution of the t complex in mice concern the frequency of t haplotypes in the wild and the degree to which these haplotypes recombine with their wild-type homologs. To address these problems, the frequency and distribution of several t complex-associated restriction fragment variants in wild mice were estimated. Sixty-four versions of chromosome 17 from wild-derived Mus musculus musculus and Mus musculus domesticus were examined with DNA probes for six loci within the t complex that exhibit restriction fragment variation. All six probes detect variants that have heretofore been found exclusively associated with the t complex. Haplotype analysis of wild-derived chromosomes revealed a high frequency (45.3%) of "mosaic" haplotypes with a mixture of t-specific and wild-type variants and only one haplotype with t-specific variants at all six loci. When 12 well-characterized t haplotypes isolated from diverse geographic regions were analyzed, only three had a complete set of t-specific restriction fragments for the six loci examined. The preponderance of mosaic haplotypes in both groups of mice can be explained by any one of the following hypotheses: genetic recombination between t haplotypes and their wild-type homologs, the persistence in wild populations of haplotypes that have descended from ancestral partial t haplotypes, or that the restriction fragment variants fixed in the ancestral t haplotype were also fixed in some wild-type haplotypes. There is evidence to support all three of these hypotheses in our data. The allelic composition of some mosaic haplotypes indicates that they may have been formed by segmental recombination, either double crossing over or gene conversion, rather than by simple single crossovers. The occurrence of indistinguishable mosaic haplotypes in both M. m. musculus and M. m. domesticus suggests that these haplotypes are ancestral rather than recently derived.  相似文献   

8.
Sphagnum (peatmoss) dominates huge areas of the Northern Hemisphere and acts as a significant carbon sink on a global scale, yet little is known about the genetic structure of Sphagnum populations. We investigated genetic structure within a population of the common peatmoss Sphagnum fuscum, to assess local patterns of genetic diversity and the spatial extent of clones. One hundred seventeen shoots were sampled from five transects in Fuglmyra, central Norway, and sequenced for three anonymous DNA regions. Five neighbourhood patches were marked along each transect, and from each patch, five stems were sampled for molecular analyses. Seventeen haplotypes could be distinguished and two major groups of haplotypes differed by 12 mutational steps. The two major haplotype groups differed significantly in microhabitat association along the distance to groundwater table and the pH gradients, indicating microhabitat differentiation. The haplotypes within these groups were all genetically similar, differing by one or two mutations. The most common haplotype occurred in four transects separated by 250-m distance. Most of the molecular variation in the population was found among transects, and within patches. Large dominating clones within each transect resulted in low variation explained by the among-patch-within-transect component of spatial structure. Mutation appears to account for a larger proportion of the population variation than recombination. Within the population, vegetative growth and asexual reproduction from gametophyte fragments dominate as the main reproductive mode.  相似文献   

9.
Large whole-genome sequencing projects have provided access to much rare variation in human populations, which is highly informative about population structure and recent demography. Here, we show how the age of rare variants can be estimated from patterns of haplotype sharing and how these ages can be related to historical relationships between populations. We investigate the distribution of the age of variants occurring exactly twice ( variants) in a worldwide sample sequenced by the 1000 Genomes Project, revealing enormous variation across populations. The median age of haplotypes carrying variants is 50 to 160 generations across populations within Europe or Asia, and 170 to 320 generations within Africa. Haplotypes shared between continents are much older with median ages for haplotypes shared between Europe and Asia ranging from 320 to 670 generations. The distribution of the ages of haplotypes is informative about their demography, revealing recent bottlenecks, ancient splits, and more modern connections between populations. We see the effect of selection in the observation that functional variants are significantly younger than nonfunctional variants of the same frequency. This approach is relatively insensitive to mutation rate and complements other nonparametric methods for demographic inference.  相似文献   

10.
BUNT  JOHN S. 《Annals of botany》1996,78(3):333-341
To characterize mangrove zonation better under conditions innorthern Australia, surveys were undertaken within a numberof riverine estuaries along the eastern coast of Cape York Peninsula,in the Gulf of Carpentaria and at one location in Van DiemenGulf in the Northern Territory. Detailed records were takenof species occurrences along shore normal transects upstreamto tidal limits in each system. A simple numeric procedure developedby Williams, Bunt and Clay (Marine Ecology Progress Series 72 : 283–287, 1991) was applied to the data to definespecies sequential ordering across the intertidal surfaces.Considerable diversity in zonal pattern was found, partly theresult of floristic differences between and along rivers withinthe study area but also arising from variability in the centresof distribution of species across the intertidal surface. Closeexamination of the data suggests the variability to be attributableto the differing responses of individual species to the characterand pattern of environmental controls operating from point topoint locally and at larger scales throughout the mangrove environment.It is concluded that constancy of centres of distribution andof sequencing order under conditions in tropical Australia arenot to be expected. At the same time, within the range of alongtransect species distributions, conditions are likely to beencountered which permit individual species, whether rarelyor not, to occupy all or most of the intertidal surface. Anyother pattern of distribution is interpreted to represent conditionswhich, at least to a degree, are limiting for the species inquestion. In mangrove environments of considerable diversity,only extensive survey can be expected to reveal the full extentof zonal pattern in the associated vegetation. Mangroves; zonation; variability; riverine estuaries; Australian tropics  相似文献   

11.
The closely related dioecious herbs Silene latifolia and Silene dioica are widespread and predominantly sympatric in Europe. The species are interfertile, but morphologically and ecologically distinct. A study of large‐scale patterns of plastid DNA (polymerase chain reaction–restriction fragment length polymorphism) haplotypes in a sample of 198 populations from most of the European ranges of both species revealed extensive interspecific haplotype sharing. Four of the 28 detected haplotypes were frequent (found in > 40 populations) and widespread. Three of these frequent haplotypes occurred in both species and the geographic distribution of each haplotype was broadly congruent in both species. Each of these three, shared and widespread haplotypes is likely to have colonized central and/or northern Europe after the last glaciation from one or more of refugial areas in southern Europe. Interspecific hybridization and plastid introgression within refugial regions and/or during the early stages of postglacial expansion is the most plausible explanation for the broadly similar distribution patterns of the shared, frequent chloroplast haplotypes in the two species. The fourth frequent, widespread haplotype was absent from S. latifolia and almost entirely restricted to Nordic S. dioica. It is most likely that this haplotype spread into the Nordic countries from a central or northern European source or from a refugial area in Russia. © 2009 The Linnean Society of London, Botanical Journal of the Linnean Society, 2009, 161 , 153–170.  相似文献   

12.
The distribution of immature Culicoides Latreille (Diptera: Ceratopogonidae) in the intertidal zone was investigated at Redland Bay near Brisbane, southeast Queensland. The aims of this study were to determine the distribution of Culicoides immatures and to identify environmental factors influencing these distributions. Light trapping of adult midges indicated that C.subimmaculatus Lee & Reye, C.marmoratus (Skuse), C.longior Hagan & Reye, C.henryi Lee & Reye, C.cordiger Macfie, may have been breeding in the study site. Soil sampling on six transects traversing mangrove and salt-marsh revealed the breeding habitats from which immature stages of the first four species were obtained. The elevation, vegetation and soils of positive sites were recorded and analysed for each species of Culicoides. The distribution of intertidal vegetation (mangroves and salt-marsh plants) was compared to MacNae's (1966) system of mangrove zonation for eastern Australia. The distribution of immature Culicoides did not correspond with mangrove zones, but was related to the presence or absence of intertidal vegetation. C.subimmaculatus was closely associated with a particular substrate and the presence of burrowing crabs.  相似文献   

13.
The distribution of Vitis vinifera subsp. silvestris, the wild grapevine subspecies of Vitis vinifera L., has been dramatically reduced in its major sites of diffusion, at first by the spread, over the last 150 years, of pathogens from North America and, more recently, with fragmentation of habitat and disbranching by humans. In this work, 418 wild grapevine samples, belonging to 78 populations, were collected in their main Mediterranean distribution areas, including the Caucasus area, and the extent of their genetic variability evaluated by analysing plastid microsatellite DNA polymorphism. Results show low haplotype diversity value, with five haplotypes detected within the analysed populations. The highest within-population haplotypic diversity, with the presence of all five detected haplotypes, was found in the Caucasus regions and in the central regions of Italy. The distribution of all detected haplotypes suggests the Caucasian region as the possible center of origin of Vitis vinifera subsp. silvestris. A principal plastid lineage was found to be fixed in several locations, in the Northernmost European countries and in the Southern island of Sardinia. These results draw attention to two different refugium sites in the Mediterranean basin and suggest that conservation priority should be given to grapevine populations still preserved in hotspots of these regions.  相似文献   

14.
DNA sequence of SSCP haplotypes at the bovine growth hormone (bGH) gene   总被引:4,自引:0,他引:4  
Previous studies using SSCP and PCR-RFLP methodologies uncovered nine polymorphic sites within the bGH gene, defining eight intragenic haplotypes falling into two main groups. In the present study we report the DNA sequence of these eight haplotypes. A total of 1494 bp were sequenced uncovering a total of 12 sequence variants. Haplotypes within groups differed among themselves at one or two sites, compared across groups, haplotypes of the two groups differed consistently at six sites, each of which was monomorphic within the respective groups. This comes to 4 differentiating sites per kb, suggesting that the two haplotype groups began to diverge about 400,000 years ago. This corresponds approximately to the estimated time of divergence of the Bos taurus and Bos indicus lineages, raising the possibility, supported by other evidence, that the two haplotype classes represent taurine and indicine haplotypes, respectively. Nucleotide sequence divergence of taurine and indicine genomes of this magnitude has far reaching implications with respect to QTL mapping and marker assisted selection in breeds derived from taurine x indicine crosses.  相似文献   

15.
Seaweeds experience many challenges to their persistence in intertidal zone habitats. Their growth rates must exceed losses associated with a range of ecological and physiological factors including desiccation, herbivory and wave forces. Growth rates depend on an alga's ability to capture and process light to build carbon-based molecules. We examined local (tidal height) and large (oceanographic) scale influences on algal photosynthetic efficiency and light climate, respectively. At the local scale, we combined periodic measurements of physiological state using PAM fluorometry with traditional demographic monitoring of a Postelsia palmaeformis , population over a tidal height gradient. Parameter estimates derived from rapid fluorescence-irradiance curves were correlated with longer-term ecological performance measures including growth rate, morphology, survivorship and reproductive output. At larger scales, we made continuous in situ measurements of chlorophyll fluorescence and light attenuation in the intertidal zone at six sites during 2001 and 2002. Light attenuation to the benthos was sharply reduced at sites when chl-a fluorescence was high. Long-term, large-scale monitoring of intertidal zone chl-a and macroalgal abundances documents that striking differences among sites are persistent and associated with oceanographic factors. The light saturation parameter and maximum photosynthetic rate calculated for several common intertidal macrophytes, along with published values of the irradiance needed to saturate their growth rates, suggest that underwater light levels may limit intertidal algal growth where phytoplankton blooms are common and persistent. We conclude that physiological stress associated with tidal and oceanographic factors contribute to macroalgal distributions.  相似文献   

16.
A mitochondrial marker for red algal intraspecific relationships   总被引:6,自引:0,他引:6  
Intraspecific studies of red algae have relied on nuclear or plastid markers rather than mitochondrial data to address questions of systematics, biogeography or population genetics. In this study, primers were developed that spanned the noncoding intergenic region between the mitochondrial cytochrome oxidase subunit 2 and cytochrome oxidase subunit 3 genes. These primers were demonstrated to be successful on a variety of red algae in different orders: Gracilariales, Bonnemaisoniales and Ceramiales (families: Delesseriaceae, Ceramiaceae and Rhodomelaceae). Amplification products were between 450 and 320 bp in length, with variation in length shown among geographically distant isolates within a species. The region was variable within a single species, as shown for Bostrychia moritziana and B. radicans, and within populations of Caloglossa leprieurii. In the latter species, four mitochondrial haplotypes were observed in isolates from a single locality in Woolooware Bay, New South Wales, Australia. Analysis of hybrids between different mitochondrial haplotypes of B. moritziana revealed that the mitochondria are maternally inherited in this species. This is the first report of a mitochondrial marker that is variable within red algal populations and may lead to a better understanding of the population ecology of these important marine organisms.  相似文献   

17.
The flora and distribution of macroalgae as well as the biomass of its two dominant species were studied in mangrove forests in Fujian Province, China. There were totally 42 species belonging to 24 genera of macroalgae, in which 15 species/8 genera belonged to Cyanophyta, 7/3 to Rhodophyta, and 20/13 to Chlorophyta. The biomass of the dominant species Caloglossa leprieurii and Catenella impudica were 2.22 to 8.44 g/m2 DW and 2.69 g/m2 DW in June,and 0.15 to 0.20 g/m2 DW and 2.12 g/m2 DW in December, respectively. On the tnmk surface of the mangrove plants,macroalgae appeared vertically to be distributed from lower upwards into six belts, namely Vaucheria sp. belt, Catenella impudica belt, Caloglossa ogasawaraensis-Bostrychia mixta belt, Calogiossa leprieurii belt, Chaetomorpha macrotona-Rhizoclonium riparium belt, and Chlorococcum sp. belt.  相似文献   

18.
Retracing the trajectories of past genetic events is crucial to understand the structure of the genome, both in individuals and across populations. A haplotype describes a string of polymorphic sites along a DNA segment. Haplotype diversity is due to mutations creating new variants, and to recombinations and gene conversions that mix and redistribute these variants among individual chromosomes in populations. A number of studies have revealed a relatively simple pattern of haplotype diversity in the human genome, dominated by a few common haplotypes representing founder ancestral ones. New haplotypes are usually rare and have a limited geographic distribution. We propose a method to derive a new haplotype from a set of putative ancestral haplotypes, once mutations in place, through minimal recombination and gene conversion pathways. We describe classes of pathways that represent the whole set of minimal pathways leading to a new haplotype. We show that obtaining this set of pathways can be represented as a problem of finding "secondary structures" of minimum energy. We present a polynomial algorithm solving this folding problem.  相似文献   

19.
Bostrychia tenuissima King and Puttock is restricted to southern Australia and New Zealand. Previous studies in Australia have revealed two distinct patterns in the presence of osmotically active polyols. Southern populations only have D-sorbitol whereas northern populations have both D-sorbitol and D-dulcitol. These polyol patterns lead to speculation on the ecotypic differentiation of these two population types. Using single-stranded confirmation polymorphism to rapidly score plastid haplotypes, plus DNA sequencing, a 100% congruence was found between polyol patterns and plastid haplotype. Analysis of 33 B. tenuissima isolates shows that the plastid relationships closely follow biogeo-graphic regions, with south-eastern Australia (southern NSW and Victoria) and South Australia and Tasmania having one haplotype and central and northern NSW having two alternate haplotypes. There is an overlap at the haplotype boundary just south of Sydney, New South Wales.  相似文献   

20.
Broad‐scale plastid (chloroplast) DNA studies of beech (Fagus sylvatica) populations suggest the existence of glacial refugia and introgression zones in south‐eastern Europe. We choose a possible refugium of beech in northern Greece, Mt. Paggeo, which hosts a private plastid haplotype for beech, to conduct a fine‐scale genetic study. We attempt to confirm or reject the hypothesis of the existence of a small‐scale refugium and to gain an understanding of the ecological and topographical factors affecting the spatial distribution of plastid haplotypes in the area. Our results reveal a high haplotype diversity on Mt. Paggeo, but the overall distribution of haplotypes shows no significant correlation with the ecological characteristics of the beech forests. However, the private haplotype is found at high frequencies in beech forests located in or near ravines, having a high spatial overlap with a relict vegetation type occurring in ecological conditions found mainly in ravines. This result emphasizes the importance of topography in the existence of glacial refugia in the wider area. Furthermore, haplotypes originating from two more widespread beech lineages in Greece are found on Mt. Paggeo, indicating a possible mixing of populations originating from a local refugium with populations from remote refugia that possibly migrated into the area after the last glaciation. © 2014 The Linnean Society of London, Botanical Journal of the Linnean Society, 2014, 174 , 516–528.  相似文献   

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