云南被子植物菊类分支的系统发育多样性及其分布格局

全球气候变化与人为活动等因素导致的生物多样性丧失,引起了全球各界对生物多样性保护的高度关注。传统生物多样性保护主要对物种、特有种、受威胁物种的种类组成及其分布模式开展研究,忽视了进化历史在生物多样性保护中的作用。云南是全球生物多样性热点地区的交汇区,生物多样性的保护历来受到广泛关注,为了更好地探讨云南生物多样性的保护措施,该研究以云南被子植物菊类分支物种为研究对象,基于物种间的演化关系,结合其地理分布,从进化历史的角度探讨物种、特有种、受威胁物种的种类组成及系统发育组成的分布格局,并整合自然保护地的空间分布,识别生物多样性的重点保护区域。结果表明:云南被子植物菊类分支的物种、特有种及受威胁物种的物种密度与系统发育多样性均显著正相关; 通过零模型分析发现,由南向北标准化系统发育多样性逐渐降低; 云南南部、东南部、西北部是云南被子植物菊类分支的重点保护区域,加强这些区域的保护,将最大化地保护生物多样性的进化历史和进化潜能。由此可见,融合进化历史信息的植物多样性格局分析不仅有助于更加深入地理解植物多样性的形成与演变,也为生物多样性保护策略的制定提供更多的思路。     

喜马拉雅山哺乳动物物种多样性垂直分布格局

生物多样性的空间分布及其相关机制一直是生态学、生物地理学和保护生物学研究的热点问题。山地生态系统生境异质性和生物多样性高, 适合研究生物多样性空间分布及其相关机制。喜马拉雅山脉位于青藏高原南缘, 是全球生态热点区域。其地形复杂, 海拔落差大(100-8,844 m), 具有明显的垂直气候带。本研究通过整合野外调查和文献资料, 系统地分析了10目23科160属313种喜马拉雅山地区哺乳动物物种多样性的垂直分布格局, 发现该区域哺乳动物总体及其子集的物种多样性垂直分布格局都为左偏倚的中峰格局, 物种多样性在海拔900-1,400 m之间最高, 不同物种子集的物种多样性垂直分布格局的模式有所不同。UPGMA聚类分析表明, 喜马拉雅山地区哺乳动物群落沿海拔梯度可以划分为5个聚类簇(海拔100-1,500 m、1,500-2,000 m、2,000-3,000 m、3,000-4,200 m以及4,200-6,000 m的地区), 大致与该地区植被的垂直带分布相吻合。喜马拉雅山地区哺乳动物物种多样性在中低海拔最为丰富, 可能跟东洋界与古北界生物群扩散后的交汇地带相关。喜马拉雅山区贯通南北的沟谷是生物扩散和迁移的通道, 沟谷内水热资源较好, 气候稳定性高, 为高山生态系统内各种生物创造了栖息条件。综上, 喜马拉雅山沟谷地区是生物多样性热点地区, 也是生物扩散和交流关键的“生态走廊”, 应加强对喜马拉雅山沟谷地区的保护, 以维系该区域较高的生物多样性。     

特有植物多样性分布格局测度方法的新进展

特有植物是生物多样性保护的重要对象,对其分布格局的研究可以为生物多样性优先保护区的确定提供重要参考.研究人员利用多种测度和分析方法,在不同地理区域对特有现象的分布格局开展了大量研究.随着分子系统学方法的不断完善及一些空间统计分析方法的引入,新的生物多样性测度方法应运而生.本文介绍了生物多样性测度方法的类型及其特点、应用现状与前景.这些测度方法的发展经历了从单一的时间或空间格局到时空格局统一的过程,具体涉及物种丰富度、谱系多样性、进化特异性以及这3种测度方法整合空间分布加权的算法.其中,谱系多样性指数(phylogenetic diversity)、谱系特有性指数(phylogenetic endemism)以及空间加权的进化特异性指数(biogeographically weighted evolutionary distinctiveness)尤其值得关注.中国特有植物分布格局的研究需要在以下4个方面进一步开展工作:(1)完善特有物种的分布格局研究;(2)加强物种的测序工作,完善谱系多样性格局的分析;(3)结合系统发育信息,揭示谱系多样性及进化历史的分布格局,进而深入开展物种p多样性和谱系p多样性的研究;(4)加强物种分布区变化的模拟,在时间维度上探讨特有现象的变化格局,为生物多样性保护提供更完善的理论支持.     

云南被子植物蔷薇分支的进化历史研究

本文以云南被子植物蔷薇分支为研究对象,基于物种间的演化关系,结合其地理分布,从进化历史的角度探讨了物种、特有种、受威胁物种的种类组成及系统发育组成的分布格局,并整合自然保护地的空间分布,对生物多样性的重点保护区域进行识别。结果显示：云南被子植物蔷薇分支的物种密度与系统发育多样性、特有种密度、受威胁物种密度均呈显著正相关,云南南部和西北部是物种丰富度与系统发育多样性最为丰富的区域;就云南整体而言,蔷薇分支的标准化系统发育多样性较低;云南南部、东南部、西北部是蔷薇分支的重点保护区域。     

西南地区壳斗科物种丰富度和特有性分布格局模拟及其环境解释

如何准确地模拟物种宏观丰富度格局和特有性中心是生物多样性保护工作的重点,也是生物地理学的热点话题。西南地区是我国壳斗科植物最丰富的地区之一,但物种多样性格局及环境驱动机制尚不清楚。本研究基于西南地区161种壳斗科植物7258个分布点位数据,利用点格局法和物种分布模型两种方式构建了物种丰富度、加权特有性指数和校正加权特有性指数的分布格局,并采用空间自回归模型(SAR)分析上述3个多样性指数与环境因子间的关系。总体上看,物种分布模型模拟的3个指数在空间上比点格局法更为连续,但数值高低分布情况具有相似性: 两种方式模拟的物种丰富度高值区主要分布在滇南边缘、桂北部和桂西南部地区(62～89种);加权特有性指数最大值集中在滇南和桂西地区(1.77～5.02);藏东南、秦岭-大巴山、桂西南部和滇东南地区具有最高的校正加权特有性指数(0.07～0.17)。SAR模型结果显示:最干月降雨量、温度季节性变化标准差、海拔变幅和土壤有机碳含量对物种丰富度的影响均显著,最干月降雨量、温度季节性变化标准差、潜在蒸散量和海拔变幅对加权特有性有着显著影响,温度季节性变化标准差、最干月降雨量、历史温度变化、增强型植被指数变异系数和海拔变幅对校正加权特有性的影响显著;SAR模型对物种丰富度、特有性指数和加权特有性指数的拟合效果(R²=0.857、0.733、0.593)分别优于普通线性模型(R²=0.689、0.425、0.422)。综上,水分可获得性、气候季节性、生境异质性、历史气候变化和土壤状况是制约西南地区壳斗科丰富度和特有性分布的最重要因素。滇南、滇东南、桂西南、桂西、秦岭-大巴山以及藏东南地区是壳斗科物种丰富度中心或特有性中心,应受到重点关注和保护。     

秦岭南坡陕西洋县辖区哺乳动物物种多样性的空间分布格局

物种多样性的空间分布格局一直是生态学和生物地理学研究的一个热点问题。山地生态系统的生境异质性和物种多样性高, 适合研究物种多样性空间分布格局及其相关机制。2016年11月至2017年11月, 本研究选取秦岭南坡陕西洋县辖区作为研究区域, 采用样线法、红外相机法和笼捕/夹捕法, 系统分析了8目21科48种哺乳动物物种多样性的空间分布格局。研究结果发现秦岭南坡洋县辖区哺乳动物物种丰富度的空间分布格局大致是中南部低, 北部和东部高; 物种多样性指数大致是中南部和北部低, 东部高。啮齿类动物和非啮齿类动物的空间分布格局存在差异。哺乳动物物种丰富度和多样性指数的垂直分布格局都符合中峰模式, 但啮齿类动物和非啮齿类动物间存在差异。最优线性模型结果表明, 研究地区哺乳动物物种多样性的空间分布格局受到多种环境因素的共同影响。其中, 年均温与物种多样性的相关性最强, 在6个最优线性模型中贡献都是最大。综上, 秦岭南坡洋县辖区中高海拔区域的物种多样性较高, 应加强对中高海拔地区的保护, 以维系该区域较高的生物多样性。     

金钟山亚热带森林林窗特征与木本植物多样性的关系

开展林窗空间格局与林下木本植物多样性关系的研究,对于认识森林物种共存、生物多样性维持以及生态系统可持续发展具有重要意义。本研究以广西金钟山自然保护区24 hm²永久森林动态监测样地为对象,采用机载激光雷达获取样地点云数据,通过R语言提取林窗并计算各林窗的形状复杂指数,利用相关分析量化林窗特征与林下木本植物多样性的关系。结果表明：该研究区林窗空隙率为6.16%,密度为15.5个·hm^-2,平均面积为39.72 m²,整体以微小和中型林窗为主;林窗空间分布格局存在地形分异特征,多分布于低海拔和缓坡区域;林窗形状复杂指数与香农指数、物种丰富度指数均呈正相关,且在低海拔和陡坡处表现更加明显。本研究揭示了亚热带森林林窗植被更新特征,对区域生物多样性保护具有一定指导作用。     

黄河流域被子植物和陆栖脊椎动物丰富度格局及其影响因子

生物多样性的大尺度空间分布格局及其形成机制一直是生态学和生物地理学的核心内容。黄河流域是我国重要的生态屏障, 明确该区域动植物多样性分布格局及其影响因素, 对我国黄河流域生态保护和高质量发展具有重要意义。本研究通过收集黄河流域被子植物和陆栖脊椎动物分布数据, 结合气候、环境异质性和人类活动等信息, 探讨了黄河流域被子植物和陆栖脊椎动物物种丰富度格局及其主要影响因素。结果表明, 黄河流域被子植物和陆栖脊椎动物物种丰富度在区域尺度具有相似的分布格局: 南部山地动植物物种丰富度最高, 而东部高寒区和北部干旱区物种丰富度最低。回归树模型表明, 冠层高度范围和净初级生产力范围分别是黄河流域被子植物和陆栖脊椎动物物种丰富度最重要的预测因子; 当移除空间自相关影响后, 环境异质性和气候因子依然对区域尺度的动植物物种丰富度具有较高且相似的解释度。表明环境异质性和气候共同决定了黄河流域被子植物和陆栖脊椎动物物种丰富度格局, 而人类使用土地面积并不是影响黄河流域动植物物种丰富度格局的主要因子。因此, 在未来的研究中若针对不同区域筛选出更精准的环境驱动因子或选用更多不同类别的环境异质性因子进行分析, 将有助于更深入理解物种多样性格局的成因。     

江西种子植物特有属的生物多样性及其保护

江西植被中拥有中国种子植物特有属５６个（含８０种）,是华东特有属的生物多样性最显著的地区。通过近年调查和数量分析,研究了江西植被中中国种子植物特有属的物种多样性、空间分布格局、生态地理特性及生物多样性中心,探讨了本区与邻近地区中国种子植物特有属分布的联系及其重要地位,并对特有属的生物多样性保护与持续发展提出了切实可行的对策。     

戴云山物种多样性与系统发育多样性海拔梯度分布格局及驱动因子

生物多样性的海拔分布格局是生态学研究的热点。海拔作为综合性因子驱动着植物群落的物种、系统发育与功能多样性的空间分布。以戴云山南坡900-1600 m森林植物群落为研究对象,探讨物种多样性、系统发育指数与环境驱动因子的相互关系以及环境因子在群落构建与多样性维持中的重要意义。结果表明：（1）森林植物群落的系统发育多样性与物种多样性沿海拔均呈现中间高度膨胀格局。（2）物种多样性Margalef指数、Shannon-Wiener指数与系统发育多样性指数呈显著正相关,表明物种多样性越高,系统发育多样性也越高。Shannon-Wiener指数与物种多样性指数（Margalef、Pielou、Simpson指数）、系统发育多样性及系统发育结构都存在显著相关性,一定程度上Shannon-Wiener指数可以代替其他指数。Pielou指数、Simpson指数、Shannon-Wiener指数与系统发育结构NRI （Net relatedness index）指数、NTI （Net nearest taxa index）指数存在显著正相关,表明群落优势度、均匀度与系统发育结构相关性较强。（3）土壤全磷含量是影响系统发育多样性和物种多样性的主要驱动因子,土壤含水量是影响Shannon-Wiener、Pielou、Simpson指数的最显著因子,海拔是影响群落系统发育结构的主要因素。海拔是影响系统发育结构变化的主要环境因子,而土壤因子是影响物种多样性与系统发育多样性的主要因素,进一步验证了物种多样性与系统发育多样性的高度相关,结果旨在揭示物种群落空间分布规律。     

Spatial phylogenetics of the native woody plant species in Hainan,China

To better identify biodiversity hotspots for conservation on Hainan Island, a tropical island in southern China, we assessed spatial variation in phylogenetic diversity and species richness using 18,976 georeferenced specimen records and a newly reconstructed molecular phylogeny of 957 native woody plants. Within this framework, we delineated bioregions based on vegetation composition and mapped areas of neoendemism and paleoendemism to identify areas of priority for conservation. Our results reveal that the southwest of Hainan is the most important hot spot for endemism and plant diversity followed by the southeast area. The distribution of endemic species showed a scattered, rather than clustered, pattern on the island. Based on phylogenetic range‐weighted turnover metrics, we delineated three major vegetational zones in Hainan. These largely correspond to natural secondary growth and managed forests (e.g., rubber and timber forests) in central Hainan, old‐growth forests and natural secondary growth forest at the margins of Hainan, and nature reserves on the island (e.g., Jianfeng and Diaoluo National Nature Reserves). Our study helps to elucidate potential botanical conservation priorities for Hainan within an evolutionary, phylogenetic framework.     

Congruent spatial patterns of species richness and phylogenetic diversity in karst flora: Case study of Primulina (Gesneriaceae)

The karst landform in southern China is renowned for its high levels of species diversity and endemism. Globally, karst ecosystems are under threat from unsustainable anthropogenic disturbance and climate changes and are among the most threatened ecosystems worldwide. In this study, we used the typical karst endemic genus in southern China, Primulina Hance, as a model to identify areas within the karst landform with high diversity and to investigate congruence between phylogenetic and species‐based measures of diversity. Using phylogenetic information and species distribution data, we measured geographical patterns of diversity with four metrics: species richness (SR), corrected weighted endemism (CWE), phylogenetic diversity (PD), and phylogenetic endemism (PE). Our results revealed a high spatial congruence among SR, PD, and PE, with hotspot areas identified in the Nanling Mountains (i.e., north Guangdong and northeast Guangxi) and southeast Yungui Plateau (i.e., north and southwest Guangxi), whereas the hotspots of CWE are comparatively uniform throughout the geographic extent. The categorical analysis of neo‐ and paleoendemism identified a pattern of mixed neo‐ and paleoendemism in numerous grid cells, suggesting that karst areas in southern China have acted as both “museums” and “cradles” of plant evolution. Conservation gap analysis of hotspots revealed that the majority of prioritized hotspots (>90%) of the genus are outside of protected areas, therefore indicating the limited effectiveness of national nature reserves for the karst flora. Overall, our results suggest that the karst flora merits more conservation attention and SR can be an effective surrogate to capture PD in conservation planning.     

A spider diversity model for the Caucasus Ecoregion

Precise information on spatial patterns of species richness and endemic species distribution is important for effective species conservation. In the Caucasus Ecoregion such information is virtually non-existent for invertebrate taxa. Using occurrence data from a large database we calculated species distribution models with the GARP algorithm for 471 spider species to visualize the diversity distribution of spider species in this region. Overall species diversity was highest in mountain forests of the North Caucasus, east-central Georgia, the southern slopes of the eastern Great Caucasus and south-east Azerbaijan. A regression tree analysis Chi squared automatic interaction detector method revealed the mean temperature of the driest quarter and precipitation parameters to be the main environmental factors shaping these patterns. Diversity of endemic species was correlated with overall species diversity but hotspots of endemic species (10+ percent of all species) exists in high-mountain areas, suggesting post-glacial speciation events in the high mountains as the main sources of high endemism in Caucasus. Further information on the spatial distribution of species diversity of invertebrate taxa in the Caucasus Ecoregion is needed to improve conservation efforts in this biodiversity hotspot.     

Impact of land use on plant biodiversity and measures for biodiversity conservation in the Loess Plateau in China – a case study in a hilly-gully region of the Northern Loess Plateau

The Loess Plateau is a special natural–cultural unit in northern China. Intensive land use in the past has had, and forestation and grass planting at present will have inevitable impacts on plant biodiversity in the Loess Plateau. Based on the analysis of floristic features within three sampling sites with different land use practices and analysis of species richness among different land use types, we discuss impacts of land use on species richness and floristic features in the Northern Loess Plateau. The results drawn from this case study are as follows: (1) It appears that forestation and grass planting have had a positive influence on the local species diversity, but they have contributed little to the native vegetation in terms of conserving its floristic features. (2) Caragana intermedia shrubland, Pinus tabulaeformis forestland, and natural grassland have made important contributions to supporting indigenous species and maintaining local plant biodiversity. (3) There is a significant positive correlation between land use diversity and species richness. These results imply that practicing biodiversity conservation in situ is feasible and the suitable choice for the Loess Plateau. Concrete measures for biodiversity conservation in the area can include setting up small nature reserves and diversifying land use patterns to maintain as much habitat as possible for native vegetation. The artificial Hippophae rhamnoides shrubland should not be further promoted, considering its negative influence on biodiversity conservation.     

Identifying hotspots of endemic woody seed plant diversity in China

Aim This study aimed to detect distribution patterns and identify diversity hotspots for Chinese endemic woody seed plant species (CEWSPS). Location China. Methods Presence of 6885 CEWSPS throughout China was mapped by taking the Chinese administrative county as the basic spatial analysis unit. The diversity was measured with five indices: endemic richness (ER), weighted endemism (WE), phylogenetic diversity (PD), phylogenetic endemism (PE) and biogeographically weighted evolutionary distinctiveness (BED). Three levels of area (i.e. 1, 5 and 10% of China’s total land area) were used to identify hotspots, but the 5% level was preferred when both the total area of the hotspots identified and the diversity of CEWSPS reached by the hotspots were considered. Results Distribution patterns of CEWSPS calculated with the five indices are consistent with each other over the national extent. However, the hotspots do not show a high degree of consistency among the results derived from the five indices. Those identified with ER and PD are very similar, and so are those with WE and BED. In total, 20 hotspots covering 7.9% of China’s total land area were identified, among which 11 were identified with all the five indices, including the Hengduan Mountains, Xishuangbanna Region, Hainan Island, and eight mountainous areas located in east Chongqing and west Hubei, in east Yunnan and west Guangxi, in north Guangxi, south‐east Guizhou and south‐west Hunan, in north Guangdong and south Hunan, in south‐east Tibet, and in south‐east Hubei and north‐west Jiangxi. Taiwan Island was also identified as a major hotspot with WE, PE and BED. Main conclusions Hotspots of CEWSPS were identified with five indices considering both distributional and phylogenetic information. They cover most of the key areas of biodiversity defined by previous researchers using other approaches. This further verifies the importance of these areas for China’s biodiversity conservation.     

Do hotspots fall within protected areas? A Geographic Approach to Planning analysis of regional freshwater biodiversity

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Assessing biodiversity and endemism using phylogenetic methods across multiple taxonomic groups

Identifying geographical areas with the greatest representation of the tree of life is an important goal for the management and conservation of biodiversity. While there are methods available for using a single phylogenetic tree to assess spatial patterns of biodiversity, there has been limited exploration of how separate phylogenies from multiple taxonomic groups can be used jointly to map diversity and endemism. Here, we demonstrate how to apply different phylogenetic approaches to assess biodiversity across multiple taxonomic groups. We map spatial patterns of phylogenetic diversity/endemism to identify concordant areas with the greatest representation of biodiversity across multiple taxa and demonstrate the approach by applying it to the Murray–Darling basin region of southeastern Australia. The areas with significant centers of phylogenetic diversity and endemism were distributed differently for the five taxonomic groups studied (plant genera, fish, tree frogs, acacias, and eucalypts); no strong shared patterns across all five groups emerged. However, congruence was apparent between some groups in some parts of the basin. The northern region of the basin emerges from the analysis as a priority area for future conservation initiatives focused on eucalypts and tree frogs. The southern region is particularly important for conservation of the evolutionary heritage of plants and fishes.     

Historical plant records enlighten the conservation efforts of ferns and Lycophytes’ diversity in tropical China

Historical records, e.g., herbarium vouchers, contain information about species distribution since the early days of the scientific exploration of floras until today. These data provide crucial evidence to map the biodiversity of the area of interest and most importantly enable the evaluation of the conservation effectiveness for a given group of organisms. This study aimed to explore the ferns and lycophytes’ diversity of Xishuangbanna Dai Autonomous Prefecture in tropical China with special emphasis on conservation efforts provided by the currently established protected areas (PAs). Instead of relying exclusively on current observation, the database was compiled from digitalized herbarium vouchers and publications being explored with special attention on the temporal and spatial dimensions of collecting efforts. Utilizing the indices including species richness, weighed endemism, corrected weighted endemism, and beta diversity, hotspots of ferns and lycophytes’ diversity were identified. In turn, the proportion of hotspots located outside PAs was estimated as a measure of conservation gaps in Xishuangbanna. Our results revealed a long collecting history of ferns and lycophytes in Xishuangbanna and this prefecture accumulated a considerable number of historical records covering 20.2 % of Chinese and 3.6% of global fern diversity. The accumulation of historical records showed strong parallelism to the historical events shaping modern China. The spatial distribution of ferns and lycophytes in Xishuangbanna was characterized by a concentration of species richness in southern valleys and endemism in western and northern mountains. In terms of conservation, existing PAs showed higher effectiveness in the protection of species richness, whereas lower effectiveness was observed in the protection of endemism and beta diversity. Our research provided a key reference for understanding the diversity and conservation of ferns and lycophytes in Xishuangbanna, as well as highlighting the locality for future collecting and conservation efforts.     

The influence of sampling intensity on the perception of the spatial distribution of tropical diversity and endemism: a case study of ferns from Bolivia

The distribution of tropical plant and animal diversity is still poorly documented, especially at spatial resolutions of practical use for conservation. In the present study, we evaluated the level to which geographical incomplete data availability of species occurrence affects the perception of biodiversity patterns (species richness and endemism) among pteridophytes in Bolivia. We used a data base of Bolivian pteridophytes (27,501 records), divided it into three time periods (1900–70, up to 1990 and up to 2006), and created grid-files at 15'-resolution for species richness and endemism. For each of these biodiversity properties we estimated the species richness (Chao 2) and the index of sampling completeness (C index) per grid, and then all these variables at both species richness and endemism were correlated. Patterns of richness were fairly consistent along all periods; the richest areas were placed along the humid-montane forest, even though they were strongly influenced by collecting intensity. Endemism had a lower degree of correlation with collecting intensity, but varied much more strongly through time than species richness. According to the C index, which gives the ratio between estimated (by Chao 2) and recorded values of species richness and endemism, both biodiversity properties tended to be undersampled in the richest grid cells. Inter-temporal correlations showed sharper differences of correlations for endemism than species richness. Consequently, already in 1970, botanists had a correct idea of the spatial distribution of pteridophyte richness in Bolivia (even though the magnitude was grossly underestimated). In contrast, patterns of endemism, which are of high conservation importance, may not even today be reliably known.