Breeding waterbirds in relation to artificial pond attributes: implications for the design of irrigation facilities

The growth of inter-basin water transfers and the development of new irrigation facilities in southeastern Spain are responsible for a variety of ecological impacts. In spite of this, the construction of artificial ponds to keep water for intensive agriculture may also provide new habitats for breeding waterbirds. We counted waterbirds during the breeding season in artificial ponds that had been built up using different materials and measured their abiotic and biotic attributes. We found that ponds were used as breeding and foraging habitat by 22 different waterbird species and breeding numbers of a few of them seemed to be larger in these artificial facilities than in nearby natural and semi-natural wetlands. Abundance and richness of breeding waterbirds was influenced by construction materials. Ponds constructed with low density polyethylene and covered with sand and stones held more species and their numbers were higher than those constructed with other plastic materials. The presence of emergent and submerged vegetation as well as abiotic attributes, such as pond size, accounted for most of the deviance when modelling richness and species abundance.     

Ecosystem size predicts eco‐morphological variability in a postglacial diversification

Identifying the processes by which new phenotypes and species emerge has been a long‐standing effort in evolutionary biology. Young adaptive radiations provide a model to study patterns of morphological and ecological diversification in environmental context. Here, we use the recent radiation (ca. 12k years old) of the freshwater fish Arctic charr (Salvelinus alpinus) to identify abiotic and biotic environmental factors associated with adaptive morphological variation. Arctic charr are exceptionally diverse, and in postglacial lakes there is strong evidence of repeated parallel evolution of similar morphologies associated with foraging. We measured head depth (a trait reflecting general eco‐morphology and foraging ecology) of 1,091 individuals across 30 lake populations to test whether fish morphological variation was associated with lake bathymetry and/or ecological parameters. Across populations, we found a significant relationship between the variation in head depth of the charr and abiotic environmental characteristics: positively with ecosystem size (i.e., lake volume, surface area, depth) and negatively with the amount of littoral zone. In addition, extremely robust‐headed phenotypes tended to be associated with larger and deeper lakes. We identified no influence of co‐existing biotic community on Arctic charr trophic morphology. This study evidences the role of the extrinsic environment as a facilitator of rapid eco‐morphological diversification.     

On modeling and complexity of developing systems

We consider the general properties of developing systems, the approaches to their modeling, and the question of their complexity. The notion “complex system” is vague; somewhat more distinct is the complexity of the model describing a phenomenon. We propose to discuss two pertinent issues. (i) The complexity of basic models is minimal; in other words, complicated basic models are needless. (ii) Living systems are simpler than inanimate ones. Though developing systems are seen in abiotic as well as in biotic nature, the fundamental difference is that living beings are capable of goal-setting and purposeful development; hence they can be described with simpler basic models.     

Amphibian species richness across environmental gradients

Large‐scale field patterns are a fundamental source of inferences on processes responsible for variation in species richness among habitats. We examined species richness of larval amphibian communities in 37 ponds over seven years on the Univ. of Michigan's E. S. George Reserve. Ordination of the community incidence matrix indicated a strong major axis of variation in species associations that was correlated with pond hydroperiod, surface area and forest canopy cover. Communities were significantly nested with those species found in ponds with high canopy cover, small area and short hydroperiod being nested subsets of those found in ponds with contrasting characteristics. Presence of fish had strong negative effects on species richness; relaxation of this effect also was apparent when fish were extirpated from ponds by drought. We employed a model selection analysis to identify the most appropriate statistical model for predicting the long‐term average species richness of these ponds from local abiotic and biotic (predator and competitor density) factors. A model including only the abiotic factors was overwhelmingly superior for the anurans; hierarchical partitioning indicated that area and canopy cover alone accounted for over 70% of the independent effects of predictor variables. The global model including both abiotic and biotic factors was the best supported model for the caudates, and correspondingly hierarchical partitioning suggested that area, hydroperiod, invertebrate predators and caudate biomass all accounted for 9–16% of the independent effects. Overall, biotic factors accounted for much less of the variation in species richness than abiotic factors. The patterns in larger, open‐canopy ponds provided little evidence of competitive effects on species richness, though there were patterns consistent with competitive effects in small, closed‐canopy ponds. The unusual temporal and spatial extent of these data enabled us to critically evaluate ideas regarding patterns in larval amphibian communities, and the effects of area, disturbance (hydroperiod) and productivity (canopy cover) on species richness of these communities. These results have important implications to the conservation of amphibian species richness in freshwater wetlands, which are among the most threatened ecosystems worldwide.     

Time,space and ecology: why some clades have more species than others

Aim We seek biotic and abiotic explanations for differences in lineage sizes of Afromontane sedges (Cyperaceae, Carex) and buttercups (Ranunculaceae, Ranunculus). Location Mountains of sub‐Saharan Africa and Madagascar. Methods We investigated differences in the species richness and diversification rates of 18 lineages of the pan‐temperate plant groups Carex and Ranunculus, established by long‐distance dispersal on African sky islands. We built generalized linear models to test the individual and the cumulative power of biotic and abiotic factors for predicting variation in the size of lineages. Tested variables were: ages of the lineages, their geographic distributions, number of mountain systems occupied, isolation/distance from ancestral areas, elevation range, number of vegetation zones and habitat types in which lineages are found, light requirement and water availability for each lineage, and the sum of the habitat factors, representing habitat heterogeneity. Habitat conservatism was measured by the overlap in habitats among the species within each lineage. Diversification rate changes were investigated using ‘laser’ in R. Results The number of Carex and Ranunculus lineages on the African mountains accumulated gradually through time. The size of these lineages could best be explained by a model combining age and distribution together with a measure of environmental heterogeneity (either elevation and water availability or habitat heterogeneity). Extensive overlap in environmental characteristics and distribution ranges among the species indicates a relatively high degree of conservatism of these characters. Main conclusions Lineages that are species‐rich are those that have the ability and time to occupy many mountain regions and a wide range of habitats. If allopatric or ecological speciation plays a role, then secondary dispersal and/or niche expansion soon obscures the patterns that may have existed at the point of speciation.     

Principles of organization of polistinae (Hymenoptera,Vespidae) population

The paper describes some invariant relations of the Polistinae population structure, including resistance to abiotic and biotic factors that occurs against the background of the hierarchy of biological systems and increasing autonomy of their functioning. A decrease in the dependence on the hostile environment is shown to be due to the activity of foundresses and workers adjusting to external rhythms, developing specialized responses to predators and parasites (predictable external noise of biotic nature), and creating new information. The population organization of Polistinae wasps is considered in the framework of Anokhin’s theory of functional systems and systemogenesis. There are specific processes in the population that unite individual colonies and their reproduction; they are accompanied by the formation of an advanced feedback and functional systems. Systemic processes can be simultaneously regarded as “adaptation” (reflecting the organization of environmental elements) and as “adaptiveness” (reflecting the organization of the activity of intra-colony processes and the organization of reproduction). The organization of the colony activity and reproduction in functional systems reflects the future survival rather than the preceding phenomena and events. The behavior of individuals in a colony is determined not only by the effects of abiotic and biotic factors (via transformation of cues into behavioral programs), but also by previous adaptations (stored in the “memory” as images of still absent events). General progress, limited or partial progress, and narrow specialization in the organization of polistine colonies and populations are considered using the examples of morphofunctional, environmental, energy and information criteria. The emphasis on invariant relations makes it possible to more fully describe biological systems in terms of such general categories as isomorphism, homeostasis or self-organization, and also enables us to use more effectively the theory of general functional systems in studying social insects.     

Abiotic and biotic factors influence the habitat use of four species of <Emphasis Type="Italic">Gymnogobius</Emphasis> (Gobiidae) in riverine estuaries in the Seto Inland Sea

Gobies that are phylogenetically related or coexist in the same marine and estuarine systems often exhibit abiotic and/or biotic habitat segregation. Thus, it is possible that species of Gymnogobius inhabiting the same riverine estuaries also exhibit abiotic and/or biotic habitat segregation. The goal of this study was to determine the differences in abiotic and biotic habitat use between these species by sampling goby and host shrimps, and by examining the physical environments of the rivers where these species are found. The surveys of goby and host shrimps were conducted in the estuaries of the Saba and Ibo rivers, which drain into the Seto Inland Sea, a body of water that separates three of the four main islands of Japan. We used hand nets and shovels to collect goby and host shrimps, and measured median sediment particle size, elevation, and salinity at each site. Generalized linear models (GLMs) were used to assess the preferences in abiotic and biotic habitat use by the goby species. Median particle size, salinity, and elevation were used as the abiotic environmental predictors, whereas the presence/absence of host shrimps were re-organized into four categories consisting of “Upogebia major” only, “Nihonotrypaea japonica” only, “Upogebia major & Nihonotrypaea japonica,” and “Upogebia yokoyai,” which were used as the biotic environmental predictors. The GLMs demonstrated that median particle size had the largest influence of the abiotic variables, with goby species segregating according to differences in sediments; moreover, there was some evidence suggesting that the host and symbiont do not always correlate at the species level. Our results indicated that although there is some overlap in abiotic and biotic habitat use among the four species of Gymnogobius, the differences were broad enough to provide an explanatory mechanism as to how these species can coexist in the same river systems.     

Studies on the ectocommensal ciliate,Trachelostyla tani nov. spec. (Protozoa: Ciliophora: Hypotrichida) from the mantle cavity of the scallop Chlamys farrei

A total of 33 sites (27 temporary pools, five dune slacks and one shallow lake) were sampled during January 1998. Forty two taxa (one ctenopoda, 19 anomopoda and 22 copepoda) are recorded. Data from the varied habitats types (temporary pools, dunary ponds, shallow lakes) are compared and biotic and abiotic factors influencing the spatial and temporal distribution of local zooplankton are discussed. The paper concludes with comments why local conservation efforts need to be directed towards temporary pools and dune slacks, two much-neglected habitats.     

Low-molecular-weight metabolites of aquatic macrophytes growing on the territory of Russia and their role in hydroecosystems

This article deals with the issues of studying low-molecular-weight volatile organic compounds (VOCs) of aquatic macrophytes growing in Russia under different environmental conditions and geographic regions. It is shown that the composition of VOCs and their content depend on the abiotic (geographical location of habitats, hydrological regime, and light conditions) and biotic factors (season and vegetation phase, distribution in different vegetative organs). Special attention has been paid to the functions performed by VOCs in aquatic ecosystems and their possible use for controlling phytoplankton development and algal “blooms” in inland water bodies.     

Occurrence and possible roles of melanic pigments in lichenized ascomycetes

Many species of lichenized ascomycetes are capable of synthesizing darkly colored melanin pigments by polymerizing phenolic compounds. Available data suggest that different clades of lichens produce various kinds of melanins, with N₂-fixing Peltigeralean lichens producing N-rich DOPA or “eumelanins” and lichens from other orders producing N-poor “allomelanins.” In general, melanic lichens seem to be more common in environments with high levels of abiotic stress such as polar and montane regions, but they are by no means restricted to these habitats. Here, we review the occurrence of melanins in lichens, their chemical structure, methods of quantification and biological roles. Good evidence exists that melanins in lichens protect the mycobiont from high UV, and the photobiont against high PAR. However, given their many unique properties, it seems likely that melanins help lichens to survive a range of biotic and abiotic stresses.     

No species is an island: testing the effects of biotic interactions on models of avian niche occupation

Traditionally, the niche of a species is described as a hypothetical 3D space, constituted by well‐known biotic interactions (e.g. predation, competition, trophic relationships, resource–consumer interactions, etc.) and various abiotic environmental factors. Species distribution models (SDMs), also called “niche models” and often used to predict wildlife distribution at landscape scale, are typically constructed using abiotic factors with biotic interactions generally been ignored. Here, we compared the goodness of fit of SDMs for red‐backed shrike Lanius collurio in farmlands of Western Poland, using both the classical approach (modeled only on environmental variables) and the approach which included also other potentially associated bird species. The potential associations among species were derived from the relevant ecological literature and by a correlation matrix of occurrences. Our findings highlight the importance of including heterospecific interactions in improving our understanding of niche occupation for bird species. We suggest that suite of measures currently used to quantify realized species niches could be improved by also considering the occurrence of certain associated species. Then, an hypothetical “species 1” can use the occurrence of a successfully established individual of “species 2” as indicator or “trace” of the location of available suitable habitat to breed. We hypothesize this kind of biotic interaction as the “heterospecific trace effect” (HTE): an interaction based on the availability and use of “public information” provided by individuals from different species. Finally, we discuss about the incomes of biotic interactions for enhancing the predictive capacities on species distribution models.     

Bioassay Approach to Prescribe Safe-limits of Exposure to Non Ionizing Radiation in Ecosystems

A biological assay that quantifies hazardous response in living matter to an electromagnetic stimulus, is evolved. Considering the various susceptible aspects of physio-anatomical systems constituting a living subject, a dominance criterion to determine an optimum all-or-none response limit of exposure to electromagnetic pollutions is established. Based on the statistics of proneness and susceptibility of discrete physio-anatomical parts of living systems (biotic components) to polluting radiations (abiotic environment), the stochastic nature of damage involved is considered to formulate a quantal index which specifies a “safe” intensity-level of electromagnetic radiation to which living systems can be exposed without encountering any deleterious effects. The locations of vulnerable parts which are affected by radiation are identified through random mosaic modeling of a test subject. Using this model, a susceptance priority sequence of biotic components is constructed. This sequence is then terminated at a point of weightage proportional to the diversity of victim population. The biotic species falling within this limit of truncation are subsequently studied to assay the tolerance (optimum lethal dose) of the test subject to the radiation in question. The possibility of simulating the entire ecological system under consideration by means of a microprocessor is suggested.     

Trait convergence and diversification arising from a complex evolutionary history in Hawaiian species of <Emphasis Type="Italic">Scaevola</Emphasis>

Species variation in functional traits may reflect diversification relating to convergence and/or divergence depending on environmental pressures and phylogenetic history. We tested trait-environment relationships and their basis in finer-scale evolutionary processes among nine extant Hawaiian species of Scaevola L. (Goodeniaceae), a taxon with a complex history of three independent colonizations by different phylogenetic lineages, parallel ecological specialization, and homoploid hybridization events in Hawai‘i. Using a wild population for each species, we evaluated traits related to plant function (morphology, leaf and wood anatomy, nutrient and carbon isotope composition). Hawaiian Scaevola species were distributed across coastal, dry forest and wet forest environments; multivariate environmental analysis using abiotic and biotic factors further showed that species from distantly related lineages inhabited similar environments. Many traits correlated with environment (based on the multivariate environmental analysis), considering both distantly related species and more closely related species. Scaevola species within shared habitats generally showed trait convergence across distantly related lineages, particularly among wet forest species. Furthermore, trait diversification through divergence was extensive among closely related Scaevola species that radiated into novel environments, especially in plant morphology and traits affecting water relations. Homoploid hybrid-origin species were “intermediate” compared to their ancestral parent species, and possessed trait combinations relevant for their current habitat. The diversity in functional traits reflected strong influences of both ecology and evolutionary history in native Hawaiian Scaevola species, and trait correspondence with environment was due to the combination of multiple processes within the taxon: trait pre-adaptation and filtering, evolutionary convergence, divergence, and hybridization.     

Historical biogeography of the ancient lycophyte genus Selaginella: early adaptation to xeric habitats on Pangea

The ancient and cosmopolitan lycophyte genus Selaginella has living representatives around the world, but their historical biogeography has not been assessed with modern methods. We estimated a time‐calibrated phylogeny using DNA marker regions rbcL and ITS1‐5.8S‐ITS2 from 200 species. Node density analyses revealed that Selaginellaceae has significantly older median and mean node ages than other putative “ancient” families. We used statistical model comparison to assess different biogeographical models on our dated tree, and to estimate ancestral ranges. These revealed that Selaginella originated on Euramerica around 383 Ma in the Devonian period, while its peak diversification began with the formation of Pangea. The divergence of the two main species‐rich Selaginella lineages occurred approximately 318 Ma on the supercontinent. The major divergences within these main lineages of Selaginella took place in the Late Permian and Early Triassic, along with lineages highly adapted for xeric habitats on Pangea.     

Artificial ponds: a substitute for natural Beaver ponds in a Central European Highland (Eifel,Germany)?

Stormwater ponds are increasingly common aquatic habitats whose biotic communities are largely unexplored. As anthropogenic development continues to alter the landscape, watershed land use is gaining recognition for its potential to predict species compositions in aquatic systems. This study reports species composition of five aquatic hemipteran families (Notonectidae, Corixidae, Belostomatidae, Nepidae, Pleidae) in 28 permanent, artificial stormwater ponds in watersheds with different land covers and associated contaminant input. We hypothesized that land cover variables would be significant drivers of aquatic hemipteran community structure in ponds, and that ponds with a high percentage of agricultural and lawn cover in the watershed would be characterized by the absence of species intolerant of the chemical, physical, and ultimately biotic changes associated with these watersheds. Non-metric multi-dimensional scaling (NMS) was used to identify dominant gradients of species composition and environmental variables. Pond morphology variables, watershed lawn, watershed agriculture, and predatory fish abundance were each found to have statistically significant correlations with hemipteran community structure. The abundance of Notonecta undulata, the species responsible for creating the largest (ranked) distance in species structure among ponds, was positively correlated with shallow, fishless ponds and independent of land use variables. The abundances of four species of corixids were negatively correlated with watershed agriculture, and hemipteran richness was positively correlated with watershed lawn and negatively correlated with pond surface area. Heirarchical cluster analysis revealed non-random hemipteran species assemblages in which congeneric corixid species tended to co-occur, contradicting traditional niche theory. Since artificial stormwater ponds are chemically different from natural-pond habitat and rapidly increasing in number, knowledge of which insect species are capable of thriving in this environment and their relationship to land use in the watershed is of both environmental and evolutionary interest. Handling editor: D. Dudgeon     

Applications of imaging methodologies to paleoanthropology: Beneficial results relating to the preservation,management and development of collections

The limited number of unearthed fossils and their accessibility are factors that hinder paleoanthropological studies. Original remains, but also osteological collections of extant specimens, have to be curated in optimal and adapted environments, and direct manipulation needs to be limited in order to preserve this irreplaceable patrimony. Imaging methodologies have recently provided ways for innovative advances in the preservation of these collections, as well as offering new perspectives to museographic displays and original scientific studies. Here, we describe recent examples of developments obtained from imaging methodologies and discuss methodological and ethical implications of these new “virtual” collections. Undeniably, “virtual anthropology” is an additional tool in our large set of analytical possibilities and for curators, with its specific constraints related to the particular nature of the analysed material. Finally, we suggest some possible guidelines for the optimisation of the preservation, management and development of collections while preserving their scientific exploitation.     

Leaf litter species identity alters the structure of pond communities

The input of leaf litter resources is a major driver of ecosystem processes in terrestrial and freshwater habitats. Although variation exists in the quantity and composition of litter inputs due to natural and anthropogenic causes, few studies have examined how such variation influences the structure and composition of aquatic food webs. Using outdoor mesocosms, we examined the bottom–up effects of 10 chemically distinct tree litter species on microbial, algal, invertebrate and vertebrate fauna found in temperate ponds. We hypothesized that individual litter species, which differ in their traits, would differentially and predictably affect abiotic and biotic elements of pond communities. We further hypothesized that the presence of leaf litter, regardless of species, would elevate resource supply and increase the biomass of community members. Finally, we hypothesized that a mixture of litter species would have non‐additive effects on community responses. We followed the system for > 4 months and measured > 30 abiotic and biotic responses related to primary and secondary production. The different species of leaf litter had major effects on abiotic and biotic responses, including phytoplankton, periphyton, zooplankton, snails, amphipods and tadpoles. Most biological responses were negatively associated with soluble carbon content of litter, or litter decay rate. Other litter traits, including phenolic concentrations and litter C:N were of secondary importance but did exhibit both positive and negative associations with several responses. The absence of litter had pervasive effects on abiotic attributes, but did not promote substantial changes in organism biomass. Most responses to the litter mixture were additive. Our results suggest that changes in temperate forest composition can strongly affect pond communities.     

Phylogeny and biogeography of tetralophodont rodents of the tribe Oryzomyini (Cricetidae: Sigmodontinae)

Oryzomyini is the richest tribe among the Sigmodontine rodents, encompassing 32 living and extinct genera and including an increasing number of recently described species and genera. Some Oryzomyini are tetralophodont showing a reduction in the number of molar folds to four, while most taxa in this tribe retain the plesiomorphic pentalophodont state. We applied phylogenetic methods, molecular dating techniques and ancestral area analyses to members of an oryzomyini clade informally named ‘D’ in former studies and included related fossil tetralophodont forms. Based on 98 morphological characters and sequences of five gene fragments, we found that the tetralophodont condition is paraphyletic. Among living taxa, Pseudoryzomys is sister to Holochilus, and Lundomys is derived from a basal divergence. A clade formed by living Holochilus and the fossils Noronhomys and Carletonomys is sister to Holochilus primigenus, making Holochilus paraphyletic. Therefore, we describe a new genus that accommodates the fossil H. primigenus. Because trans‐Andean taxa currently share a common ancestor with taxa of cis‐Adean distribution, the northern Andes uplift may have worked as a postdispersal barrier. The tetralophodont lineages diverged during the Pliocene from a cis‐Andean ancestor, and the Great Plains in South America may have favoured the diversification of tetralophodont forms adapted to open habitats during the Pliocene.     

A Proposed Timescale for the Evolution of Armophorean Ciliates: Clevelandellids Diversify More Rapidly Than Metopids

Members of the class Armophorea occur in microaerophilic and anaerobic habitats, including the digestive tract of invertebrates and vertebrates. Phylogenetic kinships of metopid and clevelandellid armophoreans conflict with traditional morphology‐based classifications. To reconcile their relationships and understand their morphological evolution and diversification, we utilized the molecular clock theory as well as information contained in the estimated time trees and morphology of extant taxa. The radiation of the last common ancestor of metopids and clevelandellids very likely occurred during the Paleozoic and crown diversification of the endosymbiotic clevelandellids dates back to the Mesozoic. According to diversification analyses, endosymbiotic clevelandellids have higher net diversification rates than predominantly free‐living metopids. Their cladogenic success was very likely associated with sharply isolated ecological niches constituted by their hosts. Conflicts between traditional classifications and molecular phylogenies of metopids and clevelandellids very likely come from processes, leading to further diversification without extinction of ancestral lineages as well as from morphological plesiomorphies incorrectly classified as apomorphies. Our study thus suggests that diversification processes and reconstruction of ancestral morphologies improve the understanding of paraphyly which occurs in groups of organisms with an apparently long evolutionary history and when speciation prevails over extinction.     

Fossil‐based comparative analyses reveal ancient marine ancestry erased by extinction in ray‐finned fishes

The marine‐freshwater boundary is a major biodiversity gradient and few groups have colonised both systems successfully. Fishes have transitioned between habitats repeatedly, diversifying in rivers, lakes and oceans over evolutionary time. However, their history of habitat colonisation and diversification is unclear based on available fossil and phylogenetic data. We estimate ancestral habitats and diversification and transition rates using a large‐scale phylogeny of extant fish taxa and one containing a massive number of extinct species. Extant‐only phylogenetic analyses indicate freshwater ancestry, but inclusion of fossils reveal strong evidence of marine ancestry in lineages now restricted to freshwaters. Diversification and colonisation dynamics vary asymmetrically between habitats, as marine lineages colonise and flourish in rivers more frequently than the reverse. Our study highlights the importance of including fossils in comparative analyses, showing that freshwaters have played a role as refuges for ancient fish lineages, a signal erased by extinction in extant‐only phylogenies.