Physical connectivity in the Mesoamerican Barrier Reef System inferred from 9 years of ocean color observations

Ocean color images acquired from the Sea-viewing Wide Field-of-view Sensor (SeaWiFS) from 1998 to 2006 were used to examine the patterns of physical connectivity between land and reefs, and among reefs in the Mesoamerican Barrier Reef System (MBRS) in the northwestern Caribbean Sea. Connectivity was inferred by tracking surface water features in weekly climatologies and a time series of weekly mean chlorophyll-a concentrations derived from satellite imagery. Frequency of spatial connections between 17 pre-defined, geomorphological domains that include the major reefs in the MBRS and river deltas in Honduras and Nicaragua were recorded and tabulated as percentage of connections. The 9-year time series of 466 weekly mean images portrays clearly the seasonal patterns of connectivity, including river plumes and transitions in the aftermath of perturbations such as hurricanes. River plumes extended offshore from the Honduras coast to the Bay Islands (Utila, Cayo Cochinos, Guanaja, and Roatán) in 70% of the weekly mean images. Belizean reefs, especially those in the southern section of the barrier reef and Glovers Atoll, were also affected by riverine discharges in every one of the 9 years. Glovers Atoll was exposed to river plumes originating in Honduras 104/466 times (22%) during this period. Plumes from eastern Honduras went as far as Banco Chinchorro and Cozumel in Mexico. Chinchorro appeared to be more frequently connected to Turneffe Atoll and Honduran rivers than with Glovers and Lighthouse Atolls, despite their geographic proximity. This new satellite data analysis provides long-term, quantitative assessments of the main pathways of connectivity in the region. The percentage of connections can be used to validate predictions made using other approaches such as numerical modeling, and provides valuable information to ecosystem-based management in coral reef provinces. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Revisiting coral reef connectivity

A large river plume generated by anomalous precipitation and oceanic circulation associated with Hurricane Mitch was detected off Honduras in October 1998 using SeaWiFS ocean color images. This event provides the background for analyzing connectivity between coral reefs and land in the Meso-American reef system. We discuss the potential implications of such short-term events for disease propagation and nutrification, and their potential significance in evolutionary processes.     

Ocean circulation and terrestrial runoff dynamics in the Mesoamerican region from spectral optimization of SeaWiFS data and a high resolution simulation

The evolution in time and space of terrestrial runoff in waters of the Mesoamerican region was examined using remote sensing techniques combined with river discharge and numerical ocean circulation models. Ocean color SeaWiFS images were processed using a new Spectral Optimization Algorithm for atmospheric correction and ocean property retrieval in Case-2 waters. A total of 157 SeaWiFS images were collected between 1997 and 2006 and processed to produce Colored Detrital Material images of the Mesoamerican waters. Monthly terrestrial runoff load and river discharge computed with a land-elevation model were used as input to a numerical model, which simulated the transport of buoyant matter from terrestrial runoff. Based on land cover for years 2003–2004, modeling results showed that the river discharge seasonality was correlated with the image averaged CDM, and the simulated plume reproduces the spatial patterns and temporal evolution of the observed CDM plume. River discharge peaked in August and CDM peaked from September to January. The buoyant matter concentration was high from October to January, and was at its lowest from March to April. Between October and December the plume was transported out of the Mesoamerican waters by a cyclonic gyre located north of Honduras. Part of the runoff from Honduras was transported towards Chinchorro Banks and the Yucatan Channel, part re-circulated into the Gulf of Honduras, and part taken toward the outside of the Mesoamerican Barrier Reef System. This study shows that all the reefs of the MBRS, including the most offshore atolls of the region, are under the influence of terrestrial runoff on a seasonal basis, with maximum effect during October to January, and minimum from March to April. Furthermore, what is seen as a giant plume in satellite images is in fact composed of runoffs of different ages.     

Declining coral skeletal extension for forereef colonies of Siderastrea siderea on the Mesoamerican Barrier Reef System, Southern Belize

Background

Natural and anthropogenic stressors are predicted to have increasingly negative impacts on coral reefs. Understanding how these environmental stressors have impacted coral skeletal growth should improve our ability to predict how they may affect coral reefs in the future. We investigated century-scale variations in skeletal extension for the slow-growing massive scleractinian coral Siderastrea siderea inhabiting the forereef, backreef, and nearshore reefs of the Mesoamerican Barrier Reef System (MBRS) in the western Caribbean Sea.

Methodology/Principal Findings

Thirteen S. siderea cores were extracted, slabbed, and X-rayed. Annual skeletal extension was estimated from adjacent low- and high-density growth bands. Since the early 1900s, forereef S. siderea colonies have shifted from exhibiting the fastest to the slowest average annual skeletal extension, while values for backreef and nearshore colonies have remained relatively constant. The rates of change in annual skeletal extension were −0.020±0.005, 0.011±0.006, and −0.008±0.006 mm yr⁻¹ per year [mean±SE] for forereef, backreef, and nearshore colonies respectively. These values for forereef and nearshore S. siderea were significantly lower by 0.031±0.008 and by 0.019±0.009 mm yr⁻¹ per year, respectively, than for backreef colonies. However, only forereef S. siderea exhibited a statistically significant decline in annual skeletal extension over the last century.

Conclusions/Significance

Our results suggest that forereef S. siderea colonies are more susceptible to environmental stress than backreef and nearshore counterparts, which may have historically been exposed to higher natural baseline stressors. Alternatively, sediment plumes, nutrients, and pollution originating from watersheds of Guatemala and Honduras may disproportionately impact the forereef environment of the MBRS. We are presently reconstructing the history of environmental stressors that have impacted the MBRS to constrain the cause(s) of the observed reductions in coral skeletal growth. This should improve our ability to predict and potentially mitigate the effects of future environmental stressors on coral reef ecosystems.     

Genetic structure of juvenile cohorts of bicolor damselfish ( Stegastes partitus ) along the Mesoamerican barrier reef: chaos through time

Dispersal in marine systems is a critical component of the ecology, evolution, and conservation of such systems; however, estimating dispersal is logistically difficult, especially in coral reef fish. Juvenile bicolor damselfish (Stegastes partitus) were sampled at 13 sites along the Mesoamerican Barrier Reef System (MBRS), the barrier reefs on the east coast of Central America extending from the Yucatan, Mexico to Honduras, to evaluate genetic structure among recently settled cohorts. Using genotype data at eight microsatellite loci genetic structure was estimated at large and small spatial scales using exact tests for allele frequency differences and hierarchical analysis of molecular variance (AMOVA). Isolation-by-distance models of divergence were assessed at both spatial scales. Results showed genetic homogeneity of recently settled S. partitus at large geographic scales with subtle, but significant, genetic structure at smaller geographic scales. Genetic temporal stability was tested for using archived juvenile S. partitus collected earlier in the same year (nine sites), and in the previous year (six sites). The temporal analyses indicated that allele frequency differences among sites were not generally conserved over time, nor were pairwise genetic distances correlated through time, indicative of temporal instability. These results indicate that S. partitus larvae undergo high levels of dispersal along the MBRS, and that the structure detected at smaller spatial scales is likely driven by stochastic effects on dispersal coupled with microgeographic effects. Temporal variation in juvenile cohort genetic signature may be a fundamental characteristic of connectivity patterns in coral reef fishes, with various species and populations differing only in the magnitude of that instability. Such a scenario provides a basis for the reconciliation of conflicting views regarding levels of genetic structuring in S. partitus and possibly other coral reef fish species.     

Geochemical signature of land-based activities in Caribbean coral surface samples

Anthropogenic threats, such as increased sedimentation, agrochemical run-off, coastal development, tourism, and overfishing, are of great concern to the Mesoamerican Caribbean Reef System (MACR). Trace metals in corals can be used to quantify and monitor the impact of these land-based activities. Surface coral samples from the MACR were investigated for trace metal signatures resulting from relative differences in water quality. Samples were analyzed at three spatial scales (colony, reef, and regional) as part of a hierarchical multi-scale survey. A primary goal of the paper is to elucidate the extrapolation of information between fine-scale variation at the colony or reef scale and broad-scale patterns at the regional scale. Of the 18 metals measured, five yielded statistical differences at the colony and/or reef scale, suggesting fine-scale spatial heterogeneity not conducive to regional interpretation. Five metals yielded a statistical difference at the regional scale with an absence of a statistical difference at either the colony or reef scale. These metals are barium (Ba), manganese (Mn), chromium (Cr), copper (Cu), and antimony (Sb). The most robust geochemical indicators of land-based activities are coral Ba and Mn concentrations, which are elevated in samples from the southern region of the Gulf of Honduras relative to those from the Turneffe Islands. These findings are consistent with the occurrence of the most significant watersheds in the MACR from southern Belize to Honduras, which contribute sediment-laden freshwater to the coastal zone primarily as a result of human alteration to the landscape (e.g., deforestation and agricultural practices). Elevated levels of Cu and Sb were found in samples from Honduras and may be linked to industrial shipping activities where copper–antimony additives are commonly used in antifouling paints. Results from this study strongly demonstrate the impact of terrestrial runoff and anthropogenic activities on coastal water quality in the MACR. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users. Communicated by Geology Editor Bernhard Riegl     

Severity of the 1998 and 2005 bleaching events in Venezuela, southern Caribbean

This study describes the severity of the 2005 bleaching event at 15 reef sites across Venezuela and compares the 1998 and 2005 bleaching events at one of them. During August and September 2005, bleached corals were first observed on oceanic reefs rather than coastal reefs, affecting 1 to 4% of coral colonies in the community (3 reef sites, n = 736 colonies). At that time, however, no bleached corals were recorded along the eastern coast of Venezuela, an area of seasonal upwelling (3 reefs, n = 181 colonies). On coastal reefs, bleaching started in October but highest levels were reached in November 2005 and January 2006, when 16% of corals were affected among a wide range of taxa (e.g. scleractinians, octocorals, Millepora and zoanthids). In the Acropora habitats of Los Roques (an oceanic reef),no bleached was recorded in 2005 (four sites,n = 643 colonies). At Cayo Sombrero, a coastal reef site, bleaching was less severe in 1998 than in 2005 (9% of the coral colonies involving 2 species vs. 26% involving 23 species, respectively). Our results indicate that bleaching was more severe in 2005 than in 1998 on Venezuelan reefs; however, no mass mortality was observed in either of these two events.     

Reefs from space: Satellite imagery,marine ecology,and ethnography in the Dominican Republic

Coral reef bleaching is an obvious indication that coastal marine ecosystems are being stressed. However, bleached reefs alone are poor indicators because they reflect the final stages of stress. This research project used multidate satellite imagery to look for coral reef changes as indicators of stress. Findings suggest that (1) satellite imagery can be used to identify small-scale changes in coastal marine ecosystems, including coral reefs; (2) remote sensing, marine ecology, and ethnographic data can be integrated to suggest potential causes of coral reef stress; and (3) changes in reef, seagrass, and mangrove ecozones are more closely tied to fishing, tourism, and land use practices than to global warming.     

Global warming, regional trends and inshore environmental conditions influence coral bleaching in Hawaii

Hawaiian waters show a trend of increasing temperature over the past several decades that are consistent with observations in other coral reef areas of the world. The first documented large‐scale coral bleaching occurred in the Hawaii region during late summer of 1996, with a second in 2002. The bleaching events in Hawaii were triggered by a prolonged regional positive oceanic sea surface temperature (SST) anomaly greater than 1°C that developed offshore during the time of annual summer temperature maximum. High solar energy input and low winds further elevated inshore water temperature by 1–2°C in reef areas with restricted water circulation (bays, reef flats and lagoons) and in areas where mesoscale eddies often retain water masses close to shore for prolonged periods of time. Data and observations taken during these events illustrate problems in predicting the phenomena of large‐scale bleaching. Forecasts and hind‐casts of these events are based largely on offshore oceanic SST records, which are only a first approximation of inshore reef conditions. The observed oceanic warming trend is the ultimate cause of the increase in the frequency and severity of bleaching events. However, coral reefs occur in shallow inshore areas where conditions are influenced by winds, orographic cloud cover, complex bathymetry, waves and inshore currents. These factors alter local temperature, irradiance, water motion and other physical and biological variables known to influence bleaching.     

Reef-Building Corals and Reefs of Vietnam: 2. The Gulf of Tonkin

This paper deals with the history and results of the studies of reefs and coral communities of the Gulf of Tonkin based on published and unpublished materials, including the author's. The state of the art in the study of reef-building scleractinian corals and reefs of this region is reported. The peculiar nature of the reefs studied is caused by the monsoon climate in the region and river runoff waters cooled to 16–18°C, silted to 100 g/m2 per day, and freshened to 28‰ in the wintertime, i.e., conditions far from optimum for reef formation. The silting and eutrophication of the gulf waters resulted in a change in the composition and structure of the coral reef communities via the reduction or elimination of certain coral species. Instead of acroporids, typical for the majority of other reefs, reef communities of the Gulf of Tonkin are dominated by poritids and faviids, which form the framework of the reefs. These peculiarities make the reefs of the Gulf of Tonkin really unique.     

Extinction rate, historical population structure and ecological role of the Caribbean monk seal

The productivity and biomass of pristine coral reef ecosystems is poorly understood, particularly in the Caribbean where communities have been impacted by overfishing and multiple other stressors over centuries. Using historical data on the spatial distribution and abundance of the extinct Caribbean monk seal (Monachus tropicalis), this study reconstructs the population size, structure and ecological role of this once common predator within coral reef communities, and provides evidence that historical reefs supported biomasses of fishes and invertebrates up to six times greater than those found on typical modern Caribbean reefs. An estimated 233,000-338,000 monk seals were distributed among 13 colonies across the Caribbean. The biomass of reef fishes and invertebrates required to support historical seal populations was 732-1018 gm(-2) of reefs, which exceeds that found on any Caribbean reef today and is comparable with those measured in remote Pacific reefs. Quantitative estimates of historically dense monk seal colonies and their consumption rates on pristine reefs provide concrete data on the magnitude of decline in animal biomass on Caribbean coral reefs. Realistic reconstruction of these past ecosystems is critical to understanding the profound and long-lasting effect of human hunting on the functioning of coral reef ecosystems.     

Macroalgae, nutrients and phase shifts on coral reefs: scientific issues and management consequences for the Great Barrier Reef

 Degradation of coral reefs often involves a “phase shift” from abundant coral to abundant macroalgae. This paper critically reviews the roles of nutrient increases in such phase shifts. I conclude that nutrient overloads can contribute to reef degradation, but that they are unlikely to lead to phase shifts simply by enhancing algal growth rates and hence allowing overgrowth of corals, unless herbivory is unusually or artificially low. Concentrations of dissolved inorganic nutrients are poor indicators of reef status, and the concept of a simple threshold concentration that indicates eutrophication has little validity. I discuss the significance and consequences of these assessments for reef management, focusing on the Great Barrier Reef, and conclude with some specific recommendations, including protection of herbivorous fishes, minimisation of terrestrial runoff, and protection of coastal reefs. Accepted: 13 August 1999     

Inventory of the Maldives’ coral reefs using morphometrics generated from Landsat ETM+ imagery

In this study, we present exact measures of the number, area, and basic morphometric statistics for every single reef of the Maldivian archipelago, as derived from the interpretation of remotely sensed data collected by the Landsat-7 ETM+ earth-observing satellite sensor. We classified and mapped seven morphological attributes of reefs (six marine habitats and reef-top islands) to 30-m depth at 30×30 m spatial resolution (pixel size) for the entire archipelago. The total archipelagic area (all coral reef and lagoon habitats) of the 16 atolls, five oceanic faros, and four oceanic platform reefs which comprise the Maldives is 21,372.72±1,068.64 km² (approx. 20% of the Maldives Territorial Sea). A total of 2,041±10 distinct coral reef structures larger than 0.01 km² occur in the Maldives, covering an area of 4,493.85 km² (including enclosed reef lagoons and islands) to 30-m depth. Smaller areas of coral reef substratum cover another 19.29 km², bringing the total area of Maldivian coral reefs to 4,513.14±225.65 km². Shallow coral platforms thus occupy 21.1% of the total area of the archipelago (0.0052% of the EEZ area of the Maldives). Of these reefs, 538 are rim and oceanic reefs, covering 3,701.93 km² (82.5% of the total reef area), and 1,503 are patch reefs within the atoll lagoons, covering 791.92 km² (17.5% of the total reef area). Islands occupy only 5.1% of the total reef area. Mapping the Maldives coral reefs at high spatial resolution is only possible with remote sensing and spatial analysis technologies. These greatly reduce the large uncertainty around current estimates of reef area. Our accurate measure of total reef area is only 50.6% of the current best estimate, a result having significant implications for predictions of the Maldives reef productivity and response to global climate change. Here we present current best practice and compare the methods and measures with previous approaches.     

Review of coral reef ecosystem remote sensing

Coral reef communities face unprecedented pressures at local, regional and global scales as a consequence of climate change and anthropogenic disturbance. Remote sensing, from satellites or aircraft, is possibly the only means to measure the effects of such stresses at appropriately large spatial scales. In the past 30 years, remote sensing of coral reefs has made rapid progress. However, the current technology is still not mature enough to monitor complicated coral reef ecosystems. Compared with foreign research in this field, our work lags far behind. There are still deficiencies in many aspects, such as basic data collection, theoretical research and platform construction. In our nation, it is even unclear how coral reefs disperse and where they may be unhealthy. In this paper, general characteristics of coral reef ecosystems and spectral features of different reef benthos have been summarized, based initially on a review of relevant literature in recent years. Based on the spectral separability of different reef types or benthos, remote sensing can be used to monitor two aspects of coral reefs: (1) Measurement of the ecological properties of reefs. (2) Health assessment of the coral reef ecosystem. In the first part, optical remote sensing methods are widely used to map reef geomorphology and habitats or biotopes. The investigation of geomorphologic zonation has proven to be one of the most successful applications, as different geomorphologic zones are associated with characteristic benthic community structures and occur at spatial scales of tens to hundreds of meters, they are amenable to remote detection by moderate to high resolution sensors. With more and more attention on the ecological problems of coral reefs, a number of studies have used high resolution sensors to map reef communities. The number of classes distinguishable depends on many factors, including the platforms, resolution (spectral, spatial and temporal resolution) and environmental conditions (water depth, water clarity, surface roughness, etc.). Compared with deep water color remote sensing, or terrestrial remote sensing, three techniques for the measurement of reef ecological properties are examined in this paper: (1) Coral reef classification system using remote sensing. (2) Techniques of sea surface correction and water column correction. (3) Techniques of coral reef information extraction from images. In terms of the complexity of coral reef ecosystems, the current techniques still need further improvement or optimization. In the health assessment of coral reef ecosystems, there are two ways to carry out the monitoring using remote sensing: (1) Monitoring the pigment or symbiotic zooxanthellae contents in corals. (2) Measuring the environmental properties of reefs. The first way is theoretically feasible, but difficult to achieve in practice. Currently, most reef health assessments are carried out by measuring environmental parameters, including sea surface temperature, solar radiation, ultraviolet radiation, water color, wind speed and direction, rainfall, ocean acidification, sea level, etc., of which sea surface temperature has been routinely measured by NOAA to monitor coral bleaching. In addition to the contents above, this article puts forward five main prospects for development in the future: (1) Establishment of a coral reef classification system using remote sensing. (2) Satellite launch for monitoring coral reefs. (3) Theoretical and methodological development. (4) Establishment of a spectral database for different reef benthos. (5) Integrated application of multi-source remote sensing data. It is hoped that the information provided here will be a reference for subsequent similar studies.     

Bathymetry,water optical properties,and benthic classification of coral reefs using hyperspectral remote sensing imagery

The complexity and heterogeneity of shallow coastal waters over small spatial scales provides a challenging environment for mapping and monitoring benthic habitats using remote sensing imagery. Additionally, changes in coral reef community structure are occurring on unprecedented temporal scales that require large-scale synoptic coverage and monitoring of coral reefs. A variety of sensors and analyses have been employed for monitoring coral reefs: this study applied a spectrum-matching and look-up-table methodology to the analysis of hyperspectral imagery of a shallow coral reef in the Bahamas. In unconstrained retrievals the retrieved bathymetry was on average within 5% of that measured acoustically, and 92% of pixels had retrieved depths within 25% of the acoustic depth. Retrieved absorption coefficients had less than 20% errors observed at blue wavelengths. The reef scale benthic classification derived by analysis of the imagery was consistent with the percent cover of specific coral reef habitat classes obtained by conventional line transects over the reef, and the inversions were robust as the results were similar when the benthic classification retrieval was constrained by measurements of bathymetry or water column optical properties. These results support the use of calibrated hyperspectral imagery for the rapid determination of bathymetry, water optical properties, and the classification of important habitat classes common to coral reefs.     

Coral reefs in an urban embayment in Hawaii: a complex case history controlled by natural and anthropogenic stress

The effects of natural and anthropogenic stress need to be separated before coral reef ecosystems can be effectively managed. In this paper, a 25 year case history of coral reefs in an urban embayment (Mamala Bay) off Honolulu, Hawaii is described and differences between natural and man-induced stress are distinguished. Mamala Bay is a 30 km long shallow coastal bay bordering the southern (leeward) shore of Oahu and the city of Honolulu in the Hawaiian Islands. During the last 25 years, this area has been hit by two magnitude 5 hurricane events (winds >240 km/h) generating waves in excess of 7.5 m. Also during this period, two large sewer outfalls have discharged up to 90 million gallons per day (mgd) or (360x10⁶ L/day) of point source pollution into the bay. Initially the discharge was raw sewage, but since 1977 it has received advanced brimary treatment. Non-point source run-off from the Honolulu watershed also enters the bay on a daily basis. The results of the study show that discharge of raw sewage had a serious but highly localized impact on shallow (10m) reef corals in the bay prior to 1977. After 1977, when treatment was upgraded to the advanced primary level and outfalls were extended to deep water (>65 m), impacts to reef corals were no longer significant. No measurable effects of either point or non-point source pollution on coral calcification, growth, species composition, diversity or community structure related to pollution can now be detected. Conversely the effects of hurricane waves in 1982 and 1992 together caused major physical destruction to the reefs. In 1982, average coral cover of well-developed offshore reefs dropped from 60–75% to 5–15%. Only massive species in high relief areas survived. Today, recovery is occurring, and notwithstanding major future disturbance events, long-term biological processes should eventually return the coral ecosystems to a more mature successional stage. This case history illustrates the complex nature of the cumulative effects of natural and anthropogenic stress on coral reefs and the need for a long-term data base before the status of a coral reef can be properly interpreted.     

Impact of cyclones on hard coral and metapopulation structure,connectivity and genetic diversity of coral reef fish

Cyclones have one of the greatest effects on the biodiversity of coral reefs and the associated species. But it is unknown how stochastic alterations in habitat structure influence metapopulation structure, connectivity and genetic diversity. From 1993 to 2018, the reefs of the Capricorn Bunker Reef group in the southern part of the Great Barrier Reef were impacted by three tropical cyclones including cyclone Hamish (2009, category 5). This resulted in substantial loss of live habitat-forming coral and coral reef fish communities. Within 6–8 years after cyclones had devastated, live hard corals recovered by 50–60%. We show the relationship between hard coral cover and the abundance of the neon damselfish (Pomacentrus coelestis), the first fish colonizing destroyed reefs. We present the first long-term (2008–2015 years corresponding to 16–24 generations of P. coelestis) population genetic study to understand the impact of cyclones on the meta-population structure, connectivity and genetic diversity of the neon damselfish. After the cyclone, we observed the largest change in the genetic structure at reef populations compared to other years. Simultaneously, allelic richness of genetic microsatellite markers dropped indicating a great loss of genetic diversity, which increased again in subsequent years. Over years, metapopulation dynamics were characterized by high connectivity among fish populations associated with the Capricorn Bunker reefs (2200 km²); however, despite high exchange, genetic patchiness was observed with annual strong genetic divergence between populations among reefs. Some broad similarities in the genetic structure in 2015 could be explained by dispersal from a source reef and the related expansion of local populations. This study has shown that alternating cyclone-driven changes and subsequent recovery phases of coral habitat can greatly influence patterns of reef fish connectivity. The frequency of disturbances determines abundance of fish and genetic diversity within species.

     

Morphologie, Ökologie und Zonierung von Korallenriffen bei Aqaba, (Golf von Aqaba,Rotes Meer)

The coral reefs of the Gulf of Aqaba are among the most northern ones of the world. This study, the first concerning the east coast of this topographically and hydrographically peculiar sea, considers relationships of biophysiographical and structural reef zones to fundamental abiotic environmental factors. An introduction to paleogeography, geology, petrography, topography, climate and hydrography is followed by terminological definitions used to describe the different reef areas. The investigations were carried out on two transects crossing fringing reefs of different shape. Each transect was 20 m wide and run from the shore over nearly 200 m to the fore reef in about 30 m depth. One reef, a “coastal-fringing reef”, represents an unaltered straight reef flat from shore to the reef edge 60 m away; two large pinnacles reach the surface some 125 m off the shore. The other reef, a “lagoon-fringing reef”, is divided into a 100 m wide lagoon of 0.5–2.3 m depth and a reef crest separated from the former by a rear reef. The reef platform of the lagoon-fringing reef is cut by a system of channels and tunnels; the reef edge is about 135 m off shore. Such water depth, substrate, temperature, illumination and water movement were recorded, about 200 common or dominant species (plants and animals) were collected, their distribution plotted and, together with other data and structural items, charted. Indicator species characterize the biophysiographical zones. Their variation as well as that of the structural and substrate zones depend on different zones of water movement. This basic factor also controls other ecological parameters such as food and oxygen supply as well as temperature and salinity gradients between fore reef and shore. From this point of view the ecological requirements of some indicator and other species and conversely the ecological settings of different reef areas are discussed. The different shapes of both reefs are explained on the basis of a “reef development cycle” — a hypothesis applicable to fringing reefs at unchanging sea level and based on the fact that only a small surf-influenced area of “living reef” is able to compensate for reef destruction: While a young coastal fringing reef is growing outwards, its back reef is gradually altered to a reef lagoon by erosion. After stillstand of seaward expansion the reef crest, too, is cut by a channel system eroded by rip currents. This stage is represented by the lagoon-fringing reef. Isolated pinnacles remain as remnants of the former reef crest; young coastal-fringing reefs develop from the shore. This stage is examplified by the first reef studied. Extension, growth intensity, dominant frame building corals, and the number of species of the Aqaba reefs are compared with those of Eilat and with reefs of the middle Red Sea, South India, Southwest-Pacific and Jamaica.     

Geographic variation in reef-fish assemblages along the Brazilian coast

The species composition of reef‐fish assemblages from nine Brazilian major coastal sites and four oceanic islands are compared. Canonical correspondence analysis (CCA) was utilized to identify groups of sites based on similarity of composition, and to correlate environmental trends with such groups. Five distinct groups of sites were recognized: (1) the South and South‐eastern coastal reefs (from Guarapari Islands to Santa Catarina, the southernmost Brazilian reefs); (2) the North‐eastern coast (extending from the Manuel Luis Reefs to Abrolhos Archipelago); (3) Trindade Island; (4) Fernando de Noronha and Atol das Rocas; and (5) St Paul’s Rocks. Water temperature, coral richness, distance from mainland, primary production and shelf width strongly correlated with the diversity and composition of the reef sites.     

No Reef Is an Island: Integrating Coral Reef Connectivity Data into the Design of Regional-Scale Marine Protected Area Networks

We integrated coral reef connectivity data for the Caribbean and Gulf of Mexico into a conservation decision-making framework for designing a regional scale marine protected area (MPA) network that provides insight into ecological and political contexts. We used an ocean circulation model and regional coral reef data to simulate eight spawning events from 2008–2011, applying a maximum 30-day pelagic larval duration and 20% mortality rate. Coral larval dispersal patterns were analyzed between coral reefs across jurisdictional marine zones to identify spatial relationships between larval sources and destinations within countries and territories across the region. We applied our results in Marxan, a conservation planning software tool, to identify a regional coral reef MPA network design that meets conservation goals, minimizes underlying threats, and maintains coral reef connectivity. Our results suggest that approximately 77% of coral reefs identified as having a high regional connectivity value are not included in the existing MPA network. This research is unique because we quantify and report coral larval connectivity data by marine ecoregions and Exclusive Economic Zones (EZZ) and use this information to identify gaps in the current Caribbean-wide MPA network by integrating asymmetric connectivity information in Marxan to design a regional MPA network that includes important reef network connections. The identification of important reef connectivity metrics guides the selection of priority conservation areas and supports resilience at the whole system level into the future.