Bt Cry1Ac毒素筛选的粉纹夜蛾离体抗性细胞与敏感细胞蛋白质组的差异分析

采用双向电泳技术和肽质量指纹图谱技术分析了Bt Cry1Ac毒素筛选的粉纹夜蛾Trichoplusia ni抗性BTI-Tn-5B1-4细胞与同源敏感细胞的蛋白质组的差。用Melanie ViewerⅡ软件在抗性细胞的双向电泳图谱上检测到的平均蛋白质点数为707±25个（n=3）,在敏感细胞的双向电泳图谱上检测到的平均蛋白质点数为637±19个（n=3）,其中分辨率高、重复性良好的显著差异点有10余个。对其中的一个敏感细胞特有的显著差异斑点进行了肽质量指纹图谱分析,经数据库 查询表明该蛋白质与胞质外周蛋白具有同源性。     

帕金森病和正常人外周血单个核细胞的蛋白质组差异分析

目的:通过研究帕金森病和正常外周血单个核细胞(PBMC)的蛋白质组差异,初步探讨外周免疫系统与帕金森病的病理联系.方法:用固相pH梯度双向凝胶电泳分离人帕金森病和正常单个核细胞总蛋白质,考马斯亮蓝染色,PDQuest 2-DE软件分析,对部分差异蛋白质点进行基质辅助激光解吸电离飞行时间质谱(MALDI-TOF-MS)测定其胶内酶解后的肽质指纹图谱,用Mascot查询系统查询SWISS-PROT数据库.结果:获得了分辨率和重复性均较好的双向电泳考染图谱,对其中的21个差异蛋白质点分别进行肽质指纹分析,经数据库查询,初步鉴定为一些与蛋白降解、抗氧化应激、信号转导、细胞骨架、细胞周期调控等有关的蛋白质.结论:建立了帕金森病PBMC的双向凝胶电泳图谱,提示帕金森病和正常的PBMC的蛋白质表达具有差异.     

人肺鳞癌组织的血清蛋白质组学的比较分析

采用以肿瘤免疫学与蛋白质组学(proteomics)研究技术有机地结合为基础的血清蛋白质组学研究体系(serologicproteomeanalysis ,SERPA)筛选肺癌分子标志物.对10例人肺鳞癌组织,应用双向凝胶电泳(two dimensionalelectrophoresis ,2 DE)技术对同一肺鳞癌组织的细胞总蛋白同时进行电泳后获得3张相同的凝胶,其中一块2 DE凝胶经银染显色作为平行胶,其余两块2 DE凝胶经电转膜将凝胶中的蛋白质转至硝酸纤维素(NC)膜上,然后分别与肺癌患者的自身血清以及正常对照血清进行Western印迹分析,获取Western印迹反应图谱.经计算机图像分析识别差异反应的蛋白质,然后与平行胶比较找出相应的差异反应蛋白质点.获得了分辨率较高的人肺鳞癌组织与患者的自身血清以及正常对照血清的Western印迹反应图谱;图像分析共识别36±8个差异反应的蛋白质;在平行胶上找到了匹配的差异反应蛋白质点.对2 0个差异蛋白质点进行了肽质指纹图分析,鉴定出14个与细胞生长增殖、细胞代谢、细胞周期调控、信号转导等有关的肺鳞癌相关抗原.通过血清蛋白质组技术对肺鳞癌组织进行的研究,建立了分辨率较高的人肺鳞癌组织与患者的自身血清以及正常血清的Western印迹反应图谱,成功鉴定14个肺鳞癌相关抗原,为进一步筛选用于肺鳞癌诊断、治疗和预后评估     

低压低氧延迟预适应小鼠海马差异表达蛋白的分离及鉴定研究

目的:探索低压低氧延迟预适应(HHDP)小鼠海马差异表达蛋白。方法:建立小鼠海马HHDP动物模型后,用含尿素的细胞裂解液提取海马总蛋白质。经等电聚焦、SDS-PAGE电泳、考马斯亮蓝R250染色,比较对照组及HHDP组双向电泳图谱上蛋白质点的差异。切取HHDP组表达增高的蛋白质点,经脱色、胰蛋白酶酶切、提取肽片段,进行MALDI-TOF-MS检测。结果:在正常对照组和HHDP组海马总蛋白双向电泳图谱上,分别检测到481±38和477±21个点,匹配点为169±6个。其中HHDP组比对照组增高大于2倍的有33±10个点,降低大于2倍的有21±12个点。电泳图谱平均相关系数为0.7748±0.0267。有12个点在HHDP组显著增高(P<0.05,n=4),对其进行了肽质量指纹图谱分析,其中8个蛋白点得到相应的肽质量指纹图谱。数据库检索显示其中一个为果糖二磷酸醛缩酶A。3个在蛋白质数据库中没有检索到与之相匹配的任何蛋白,可能为新蛋白。另外4个可找到与其有部分匹配的氨基酸序列,但分子量和等电点与对应蛋白相差悬殊,它们可能具有同源性。结论:小鼠海马HHDP时,果糖二磷酸醛缩酶A等多种蛋白表达发生改变,可能是产生HHDP的重要机制之一。     

应用蛋白质组学的方法筛选胰腺干细胞标记物

探索利用蛋白质组学的方法筛选胰腺干细胞的标记物.通过大鼠胰腺大部分切除(Px)的方法建立胰腺增生模型,采用双向电泳(2DE)分离比较Px术后第3天大鼠增生胰腺组织与假手术(Sx)非增生胰腺组织蛋白质的表达谱差异,用基质辅助激光解吸离子化飞行时间质谱(MALDI-TOF-MS)和肽质量指纹图谱(PMF)的方法对差异蛋白进行鉴定,进一步经生物信息学检索,筛选与胚胎发育和细胞分化相关的蛋白质分子.蛋白质印迹分析蛋白质HSP47、Vimentin在Px大鼠胰腺组织中的表达,以验证2DE的结果.2DE显示Sx和Px大鼠胰腺组织平均蛋白质点数分别为(1369±31)和(1315±28)个,其中共有91个蛋白质点出现1.5倍以上的表达差异.所有差异蛋白质点PMF鉴定出53种蛋白质,其中Vimentin,cytokeratin8(CK8),lymphocytecytosolicprotein1(L-plastin),heterogeneousnuclearribonucleoproteinA2/B1(hnRNPA2/B1)和L-arginine:glycineamidinotransferase(AGAT)与胚胎发育和细胞分化有关,这些蛋白质可能是胰腺干细胞潜在的候选标记物.总之,蛋白质组学的方法利用其高通量的特点能有效发现潜在的胰腺干细胞生物学标记物.     

同时放化疗敏感性不同宫颈癌组织的二维电泳图谱建立及质谱分析

目的:分析同时放化疗后高敏感和低敏感中晚期宫颈癌组织之间蛋白质组的差异,为确定宫颈癌同时放化疗敏感性相关蛋白提供依据。方法:收集治疗前的中晚期宫颈癌活检组织标本,均为中分化鳞癌,置于—80℃超低温冰箱保存。同时放化疗后,根据WHO实体瘤疗效判断标准,将收集的10例宫颈癌组织标本分为高敏感组(5例)和低敏感组(5例);提取组织总蛋白,进行双向凝胶电泳(two-dimensional gel electrophoresis,2-DE)得到凝胶图谱,采用PD-quest 7.0软件进行匹配和差异分析,识别两组之间表达差异蛋白点。将部分差异蛋白点进行胶内原位酶解后进行MALDI-TOF-MS分析,获取肽质量指纹图,数据库搜索鉴定蛋白质。结果:建立了分辨率高,重复性好的同时放化疗后宫颈癌组织高敏感组和低敏感组的双向凝胶电泳图谱。高敏感组蛋白点数为781±74个,低敏感组蛋白点数为766±52个,组间平均匹配率为87.6%。质谱分析成功鉴定15个差异表达蛋白,其中7个蛋白质在高敏感组高表达,8个蛋白质在高敏感组低表达。结论:蛋白质2-DE图谱和质谱鉴定结果说明同时放化疗后高敏感组和低敏感组宫颈癌组织间存在蛋白质表达的差异,这些蛋白质可能与同时放化疗敏感性有关。     

融合细胞株Eahy926与亲本人肺腺癌细胞株A549差异表达蛋白的蛋白质组学分析

融合细胞株Eahy926是人肺腺癌细胞株A549和人脐静脉内皮细胞杂交而成的永生化细胞株,具有血管内皮细胞的特性,已广泛用于内皮细胞相关研究. 本研究应用蛋白质组学技术分析融合细胞株Eahy926与亲本人肺腺癌细胞株A549的蛋白质差异表达,探讨融合细胞生物学特性变化及其机制. 对Eahy926和亲本A549的细胞总蛋白质进行双向凝胶电泳,在PDQuest软件辅助下找出差异表达蛋白质点,经肽质量指纹图谱(peptide mass fingerprinting, PMF) 和串级质谱(tandem mass spectrometry,TMS) 分析,SWISS-PROT数据库检索,成功鉴定出28个差异蛋白,如CATB、CK8、CK18、annexin A2、GRP78、HSP90、HSP60、vimentin等一些与分子伴侣、氧化应激、能量代谢、信号转导等有关,并与肿瘤细胞分裂增殖、分化凋亡、侵袭转移、免疫逃逸以及肿瘤血管生长密切关联的蛋白质. 研究发现,融合细胞株Eahy926和人肺腺癌细胞株A549的蛋白质组表达谱存在明显差异,这将有助于今后进一步探讨肿瘤细胞与内皮细胞的相互作用机制及其融合细胞的特性,筛选肿瘤增殖和转移相关蛋白质及分子标志物,亦可为肿瘤的抗血管生成治疗提供新思路.     

温敏核不育水稻花药蛋白质组初步分析

采用固相pH梯度 SDS聚丙烯酰胺双向凝胶电泳对温敏核不育水稻 96 4 2S可育与不育条件下减数分裂期花药总蛋白进行了分离 ,通过银染显色 ,获得了分辨率和重复性较好的双向电泳图谱 .PDQuest 2DE图像分析软件可识别约 10 0 0个蛋白质点 .蛋白质点在 2D胶上的重复性为 :沿等电聚焦方向偏差为 1 4 5± 0 2 3mm(n =8) ,沿SDS PAGE方向偏差为 :1 15± 0 17mm(n =8) .对两种育性不同样品的 2D胶上部分共有的蛋白质点 ,采用基质辅助激光解析电离飞行时间质谱 (matrixassistedlaserdesorption ionizationtimeofflightmassspctrometry ,MALDI TOF MS)进行了肽质谱指纹图分析 .通过采用PeptIdent软件对SWISS PROT数据库的查询 ,有 5 0个蛋白质点在数据库得到归属鉴定 .对育性不同的2种样品 2D较上明显差异的蛋白质点进行了分析鉴定 .在不育变化为可育的过程中 ,明显表达上调的蛋白质点包括几丁质酶 ,酸性磷酸酶 ,胞浆激酶 ,谷蛋白前体 ,以及ESTSC72 61蛋白 ,明显下调的蛋白质包括β expansin前体 ,谷氨酸氨甲酰转移酶和 1种未知功能的蛋白质     

结核分枝杆菌培养物不同组份蛋白质组研究

将结核分枝杆菌H37RV株在苏通培养基内,37℃培养21d,然后将培养物分成上清液(A)、细胞浆(B)和细胞膜?蛋白质样品。以pH3.0～10.0的IPG预制胶条等电聚焦电泳为第一向,SDSPAGE为第二向进行双向电泳(2DE)、银染。经扫描、计算机处理。A组份的部分蛋白质斑点采用质谱仪进行蛋白质鉴定。A、B和C 3个组份蛋白质斑点总数分别为907、884和681;3个组份蛋白质分子量分布基本相似,约70.5%～74.4%在10～49kD之间;蛋白质等电点(pH)A、B两组份分布基本相似,约80.9%～83.5%在pH3.0～6.4之间,而C组份pH7.6～10.0之间的蛋白质斑点数比A和B两组分略多;A、B和C 3个组份表达丰度较高的蛋白质斑点数占各组蛋白质斑点总数的比例分别为7.8%、27.4%和2.8%,蛋白质等电点90.0%均分布在pH3.0～6.4范围内。B组份蛋白质分子质量73.1%分布在10～49kD之间,比A、B两组份略高。A组份14个蛋白质斑点经肽质量指纹谱分析,其中,9个点有同源性的或推测的蛋白质功能,5个蛋白质功能不清楚。总之,初步获得了结核分枝杆菌H37RV株在上述体外培养条件下收获的培养物的上清液、细胞浆、细胞膜蛋白质组2DE图谱及其特点,为该菌功能基因组研究提供蛋白质组信息。     

橡胶树死皮病胶乳C-乳清差异表达蛋白质的筛选与鉴定

橡胶树死皮病(Tapping Panel Dryness,TPD)在世界各橡胶种植园普遍发生,给橡胶种植业带来严重的危害。为了更好地了解和阐明死皮病发生、发展的分子机制,本研究应用双向凝胶电泳技术（2-DE）比较橡胶树死皮株与健康株胶乳C-乳清蛋白质组表达的差异。采用固相pH梯度双向凝胶电泳分离橡胶树死皮株与健康株C-乳清的总蛋白质,凝胶经考染显色后,用PDQuest7.40图像分析软件进行比较分析,识别差异表达的蛋白质。这些点经过胶内酶切后进行基质辅助激光解析电离飞行时间质谱(MALDI-TOF-MS)分析获取肽质指纹图谱(PMF),Mascot软件搜索SWISS-PROT和NCBInr数据库鉴定蛋白质。结果：①橡胶树死皮株与健康株C-乳清凝胶的平均蛋白质点数分别为1075±35和1134±27,其平均匹配的点数分别为982±38和1008±22,组内图像匹配率达91.89﹪和88.72﹪。②橡胶树死皮株与健康株C-乳清组间的平均匹配蛋白点数为970±25。利用MALDI-TOF-MS质谱技术对40个差异明显的蛋白点进行分析鉴定,通过查询数据库鉴定了27个蛋白质。本研究建立了分辨率高且重复性较好的橡胶树死皮株与 健康株胶乳C-乳清的双向凝胶电泳图谱,并应用质谱技术鉴定了其中表达差异的蛋白质点,这些差异表达的蛋白质可能参与了死皮发生和发展的过程。     

蛋白表达抑制稳定株MDA—MB-231-Tudor—SNI的筛选和鉴定

目的采用针对人类Tudor—SN基因的RNA干扰（RNAi）技术建立Tudor—SN表达抑制的乳腺癌MDA—MB-231稳定细胞株。方法利用脂质体转染方法将pGenesil—shRNA—hTudor—SNI质粒转染进入MDA—MB-231细胞,经G418筛选出稳定株,通过RT—PCR检测Tudor—SN的mRNA水平,再以Western印迹技术鉴定Tudor—SN蛋白表达情况并计算蛋白表达抑制率。结果与对照组相比,以G418筛选的MDA—MB-231-Tudor—SNI稳定株Tudor—SN的mRNA水平降低（P〈0．01,n=3）,蛋白表达水平明显下调（P〈0．01,n=3）,蛋白表达抑制率达78．12％。结论成功筛选并鉴定人类Tudor—SN蛋白表达抑制MDA—MB-231稳定株,有助于深入研究Tudor—SN蛋白在乳腺癌中的作用。     

Antiproliferative Activity of Kinetin Riboside on HCT-15 Colon Cancer Cell Line

Cytokinins and cytokinin nucleosides are purine derivatives with potential anticancer activity both in vitro and in vivo. N⁶-furfuryladenosine (kinetin riboside, KR) displays antiproliferative and apoptogenic activity against various human cancer cell lines and has recently been shown to suppress tumor growth in murine xenograft models of human leukemia and melanoma. In this study, we demonstrate that KR is able to inhibit the proliferation in HCT-15 human colon cancer cells in a dose-dependent manner with a concentration of 2.5 μM, which causes 50% inhibition of cell viability. The cell cycle analysis by flow cytometry showed that KR arrested cell cycle progression in the S Phase by blocking through G₂/M and G₀/G₁ phase in HCT-15 colon cells. Moreover, suppression of clonogenic activity occurs after exposure to KR at a concentration of 2.5 μM for HCT-15.     

TF-1细胞凋亡相关基因的研究

利用近年来发展起来的代表差异分析（cDNA representational differences analysis, cDNA-RDA）技术研究了在人红白血病细胞株TF-1细胞撤除细胞因子后进入凋亡时诱导表达的基因.发现了6个新基因片段.其中有三个经与GenBank nr和dbEST查询均没有发现同源性,已经向GenBank进行登记,登记号分别为U83208,U83279,U83397.此外还发现一批已知基因的表达与凋亡相关,其中包括Hou和人硫氧还原蛋白等, 提示它们在凋亡中可能起作用.这项工作为进一步研究凋亡相关基因打下了良好基础.通过RDA的研究结果,有可能发现人白血病细胞凋亡的特异标记蛋白或发挥作用的重要蛋白,以期为白血病治疗提供理论基础.     

Squamous Cell Differentiation in a Clonal Teratocarcinoma Cell Line

Several clonal teratocarcinoma cell lines restricted to squamous cell differentiation have been established from a subculture of totipotential murine teratocarcinoma stem cells. These lines contain a continuum of cell types from less differentiated precursor cells to differentiated squamous cells. In contrast to their highly malignant progenitors, these cells are nontumorigenic. Chromosomally, the cells are near-tetraploid, and their DNA distributions are tetraploid. These cell lines may prove useful in the study of normal squamous cell differentiation and also will be important in studies concerning the conversion of malignant cells to non-malignant progeny.     

Control of Cell pH in the T84 Colon Cell Line

Cell pH regulation was investigated in the T84 cell line derived from epithelial colon cancer. Cell pH was measured by ratiometric fluorescence microscopy using the fluorescent probe BCECF. Basal pH was 7.17 ± 0.023 (n= 48) in HEPES Ringer. After acidification by an ammonium pulse, cell pH recovered toward normal at a rate of 0.13 ± 0.011 pH units/min in the presence of Na⁺, but in the absence of this ion or after treatment with 0.1 mm hexamethylene amiloride (HMA) no significant recovery was observed, indicating absence of Na⁺ independent H⁺ transport mechanisms in HEPES Ringer. In CO₂/HCO⁻ ₃ Ringer, basal cell pH was 7.21 ± 0.020 (n= 35). Changing to HEPES Ringer, a marked alkalinization was observed due to loss of CO₂, followed by return to the initial pH at a rate of −0.14 ± 0.012 (n= 8) pH/min; this return was retarded or abolished in the absence of Cl⁻ or after addition of 0.2 mm DIDS, suggesting extrusion of bicarbonate by Cl⁻/HCO⁻ ₃ exchange. This exchange was not Na⁺ dependent. When Na⁺ was added to cells incubated in 0 Na⁺ Ringer while blocking Na⁺/H⁺ exchange by HMA, cell alkalinization by 0.19 ± 0.04 (n= 11) pH units was observed, suggesting the presence of Na⁺/HCO⁻ ₃ cotransport carrying HCO⁻ ₃ into these cells, which was abolished by DIDS. These experiments, thus, show that Na⁺/H⁺ and Cl⁻/HCO⁻ ₃ exchange and Na⁺/HCO⁻ ₃ cotransport participate in cell pH regulation in T84 cells. Received: 3 April 2000/Revised: 22 June 2000     

MAR介导的逆转录病毒包装细胞系的建立

根据GenBank登录的序列号,使用primer5.0进行引物设计,提取人的外周血基因组DNA为模板,PCR方法扩增出人β-珠蛋白MAR序列,将MAR序列插入到逆转录病毒表达载体pLXSN,构建MAR序列介导的逆转录病毒载体。酶切和测序鉴定后,阳离子聚合物转染PA317细胞,G418筛选出阳性细胞克隆,提取病毒液上清,测定逆转录病毒颗粒滴度,逆转录病毒颗粒的最高滴度为1.6×106CFU/mL,成功建立了MAR介导的逆转录病毒包装细胞系。     

VR09 Cell Line: An EBV-Positive Lymphoblastoid Cell Line with In Vivo Characteristics of Diffuse Large B Cell Lymphoma of Activated B-Cell Type

Background

small B-cell neoplasms can show plasmacytic differentiation and may potentially progress to aggressive lymphoma (DLBCL). Epstein-Barr virus (EBV) infection may cause the transformation of malignant cells in vitro.

Design and Method

we established VR09 cell line with plasmacytic differentiation, obtained from a case of atypical, non-CLL B-cell chronic lymphoproliferative disease with plasmacytic features. We used flow cytometry, immunohistochemistry, polymerase chain reaction, cytogenetic analysis and florescence in situ hybridization in the attempt at thoroughly characterizing the cell line. We showed VR09 tumorigenic potential in vivo, leading to the development of activated DLBCL with plasmacytic features.

Results

VR09 cells displayed plasmacytic appearance and grew as spherical tumors when inoculated subcutaneously into immunodeficient Rag2^−/− γ-chain^−/− mice. VR09 cell line and tumors displayed the phenotype of activated stage of B cell maturation, with secretory differentiation (CD19+ CD20+ CD79a+ CD79b+/− CD138+ cyclin D1- Ki67 80% IgM+ IgD+ MUM1+ MNDA+ CD10- CD22+ CD23+ CD43+ K+, λ- Bcl2+ Bcl6-) and they presented episomal EBV genome, chromosome 12 trisomy, lack of c-MYC rearrangement and Myd88 gene mutation, presence of somatic hypermutation in the VH region, and wild-type p53.

Conclusion

This new EBV-positive cell line may be useful to further characterize in vivo activated DLBCL with plasmacytic features.     

Overexpression of XIAP Inhibits Apoptotic Cell Death in an Oligodendroglial Cell Line

1. This study describes the use of an oligodendroglial cell line (158N) to study the protective effects of X-chromosome-linked inhibitor of apoptosis (XIAP) overexpression.2. 158N cells were transiently transfected with either pCMV-Myc-XIAP or control pCMV-Myc vector. At 48 h post-transfection, immunoblotting and immunocytochemical staining showed robust myc-XIAP overexpression in pCMV-Myc-XIAP transfected cells relative to pCMV-Myc-transfected cells and normal 158N cells. 158N cells were treated with either 100 nm staurosporine (STS) or 300 M dopamine (DA) and cell survival/function determined using two cell viability assays.3. Both STS and DA treatments resulted in increased apoptotic death of pCMV-Myc transfected cells. In contrast, there was significant decrease in apoptotic cell death in cells transfected with pCMV-Myc-XIAP. Finally, XIAP overexpression was found to significantly reduce caspase-3 enzyme activity levels in response to apoptotic stimuli.4. These results provide evidence that XIAP overexpression promotes cell survival in a non-neuronal cell type derived from the central nervous system. In addition, these data suggest that the 158N oligodendroglial cell line is a suitable tool for transient transfection studies, which is a problem frequently encountered when attempting to introduce genes of interest in cultures of primary oligodendroglia.     

Induction of Apoptotic Cell Death in a Neuroblastoma Cell Line by Dibucaine

Dibucaine, a local anesthetic known to interact with cell membranes, induced apoptosis in SK-N-MC human neuroblastoma cells in a dose-dependent manner. Apoptosis was demonstrated by direct visualization of morphological nuclear changes using a DAPI staining technique and confirmed by the production of characteristic ladder patterns of DNA fragmentation on gel electrophoresis. At concentrations which induced apoptosis, dibucaine significantly altered membrane fluidity, indicating that fluidity may be a major target for the cytotoxic action of dibucaine. Also, dibucaine increased intracellular calcium levels more effectively in calcium-containing Krebs–Ringer buffer than in calcium-free Krebs–Ringer buffer. Removal of extracellular calcium or addition of antioxidants or protein synthesis inhibitor effectively blocked dibucaine-induced apoptosis. These results suggest that membrane damage, intracellular calcium levels, and oxygen free radicals may be involved in the apoptosis induced by dibucaine.