The timing of diversification within the most divergent parrot clade

The Strigopidae are an ancient parrot (Psittaciformes) family consisting of three extant species placed in two genera (Nestor, Strigops) and restricted to New Zealand. Their evolutionary history is clouded because the timing of divergence events within this family has variously been attributed to Pleistocene climate change or much earlier earth‐historic events. Here we examine new psittaciform DNA sequence data, and combine them with previously published sequences, to shed light on the poorly understood timing of diversification within the Strigopidae. Using calibrations indirectly derived from both psittaciform and non‐psittaciform fossils, our data indicate a Late Pliocene or Early Pleistocene (ca 1.2–3.6 mya) differentiation between the two Nestor species (kea and kaka), possibly in response to shifts in habitat distribution associated with sea level fluctuations. The unique, monotypic, nocturnal and flightless genus Strigops (kakapo) is shown to have diverged from the Nestor lineage probably ca 28–29 mya, coinciding with the potential Oligocene submergence of Zealandia when much of its landmass may have been fragmented into smaller islands, providing a setting for allopatric diversification.     

When parasites persist: tapeworms survive host extinction and reveal waves of dispersal across Beringia

Investigations of intercontinental dispersal between Asia and North America reveal complex patterns of geographic expansion, retraction and isolation, yet historical reconstructions are largely limited by the depth of the record that is retained in patterns of extant diversity. Parasites offer a tool for recovering deep historical insights about the biosphere, improving the resolution of past community-level interactions. We explored biogeographic hypotheses regarding the history of dispersal across Beringia, the region intermittently linking Asia and North America, through large-scale multi-locus phylogenetic analyses of the genus Schizorchis, an assemblage of host-specific cestodes in pikas (Lagomorpha: Ochotonidae). Our genetic data support palaeontological evidence for two separate geographic expansions into North America by Ochotona in the late Tertiary, a history that genomic evidence from extant pikas does not record. Pikas descending from the first colonization of Miocene age persisted into the Pliocene, subsequently coming into contact with a second wave of Nearctic colonists from Eurasia before going extinct. Spatial and temporal overlap of historically independent pika populations provided a window for host colonization, allowing persistence of an early parasite lineage in the contemporary fauna following the extinction of its ancestral hosts. Empirical evidence for ancient ‘ghost assemblages'' of hosts and parasites demonstrates how complex mosaic faunas are assembled in the biosphere through episodes of faunal mixing encompassing parasite lineages across deep and shallow time.     

The earliest record of the genus Cola (Malvaceae sensu lato: Sterculioideae) from the Late Oligocene (28–27 Ma) of Ethiopia and leaf characteristics within the genus

A fossil leaf compression from the Late Oligocene (28–27 Ma) of northwestern Ethiopia is the earliest record of the African endemic moist tropical forest genus Cola (Malvaceae sensu lato: Sterculioideae). Based on leaf and epidermal morphology, the fossil is considered to be very similar to two extant Guineo-Congolian species but differences warrant designation of a new species. This study also includes a review of the fossil record of Cola, a comprehensive summary of leaf characteristics within several extant species of Cola, Octolobus, and Pterygota, and a brief discussion of the paleogeographic implications of the fossil species affinity and occurrence in Ethiopia.     

Molecular evolution of the Lake Baikal endemic caddisflies (Trichoptera)

Phylogenetic relationships of the nine Lake Baikal endemic caddisfly species with the representatives of the genus Apatania (Apataniidae) were reconstructed on the basis on nucleotide sequences of the mitochondrial COI gene. The results of Bayesian analysis pointed to the relationships of the endemics with the North American Apatania incerta (Banks, 1897) and A. sorex (Ross, 1941). The divergence of the genetic lineages of the Baikalian and Nearctic apataniids occurred in the Late Oligocene–Early Miocene. On the dendrogram, endemic species formed two monophyletic clades corresponding to the tribes Thamastini and Baicalinini. It was also found that the genus Protobaicalina was polyphyletic, while the genus Baicalina was a species flock. Our analysis showed that the nearest common ancestor of the studied Baikal caddisfly species existed about 21 Mya, while the modern species composition of endemic fauna dates back to Pliocene–Pleistocene age (2.5–0.7 million years).     

FILLING A GAP: THE FIRST OCCURRENCES OF EPIPHAXUM (CNIDARIA: HELIOPORACEA: LITHOTELESTIDAE) IN THE EOCENE, OLIGOCENE AND MIOCENE

Abstract:  A new species of the genus Epiphaxum (family Lithotelestidae) is described and illustrated in detail, and compared to other species. Epiphaxum arbuscula sp. nov. has been collected from Upper Eocene (Priabonian), Upper Oligocene (Chattian) and Lower Miocene (Upper Burdigalian) deposits of the Aquitaine Basin, south-west France. Epiphaxum is a poorly documented genus but its fossil record extends back to the Late Cretaceous; it was previously known only from the Paleocene (Danian). Epiphaxum arbuscula differs from all others species of the genus in the form of its colony. In contrast to the creeping colonies of previously known species, it has branched colonies. It is very common at one Upper Oligocene outcrop from which an assemblage with submarine cave remains has been described. A close relationship between the three extant species (two from the Caribbean Sea and one from the Indo-West Pacific region) and the Paleogene species is also noted. These constitute a group that has not undergone any important morphological changes for the last 65 million years.     

Ancient mitochondrial genomes from Chinese cave hyenas provide insights into the evolutionary history of the genus Crocuta

Cave hyenas (genus Crocuta) are extinct bone-cracking carnivores from the family Hyaenidae and are generally split into two taxa that correspond to a European/Eurasian and an (East) Asian lineage. They are close relatives of the extant African spotted hyenas, the only extant member of the genus Crocuta. Cave hyenas inhabited a wide range across Eurasia during the Pleistocene, but became extinct at the end of the Late Pleistocene. Using genetic and genomic datasets, previous studies have proposed different scenarios about the evolutionary history of Crocuta. However, causes of the extinction of cave hyenas are widely speculative and samples from China are severely understudied. In this study, we assembled near-complete mitochondrial genomes from two cave hyenas from northeastern China dating to 20 240 and 20 253 calBP, representing the youngest directly dated fossils of Crocuta in Asia. Phylogenetic analyses suggest a monophyletic clade of these two samples within a deeply diverging mitochondrial haplogroup of Crocuta. Bayesian analyses suggest that the split of this Asian cave hyena mitochondrial lineage from their European and African relatives occurred approximately 1.85 Ma (95% CI 1.62–2.09 Ma), which is broadly concordant with the earliest Eurasian Crocuta fossil dating to approximately 2 Ma. Comparisons of mean genetic distance indicate that cave hyenas harboured higher genetic diversity than extant spotted hyenas, brown hyenas and aardwolves, but this is probably at least partially due to the fact that their mitochondrial lineages do not represent a monophyletic group, although this is also true for extant spotted hyenas. Moreover, the joint female effective population size of Crocuta (both cave hyenas and extant spotted hyenas) has sustained two declines during the Late Pleistocene. Combining this mitochondrial phylogeny, previous nuclear findings and fossil records, we discuss the possible relationship of fossil Crocuta in China and the extinction of cave hyenas.     

Descriptions and phylogenetic relationships of a new genus and two new species of Oligo‐Miocene cormorants (Aves: Phalacrocoracidae) from Australia

Tertiary cormorant fossils (Aves: Phalacrocoracidae) from Late Oligocene deposits in Australia are described. They derive from the Late Oligocene – Early Miocene (26–24 Mya) Etadunna and Namba Formations in the Lake Eyre and Lake Frome Basins, South Australia, respectively. A new genus, Nambashag gen. nov. , with two new species ( Nambashag billerooensis sp. nov. , 30 specimens; Nambashag microglaucus sp. nov. , 14 specimens), has been established. Phylogenetic analyses based on 113 morphological and two integumentary characters indicated that Nambashag is the sister taxon to the Early Miocene Nectornis miocaenus of Europe and all extant phalacrocoracids. As Nambashag, Nectornis, and extant phalacrocoracids constitute a strongly supported clade sister to Anhinga species, the fossil taxa have been referred to Phalacrocoracidae. Sulids and Fregata were successive sister taxa to the Phalacrocoracoidea, i.e. phalacrocoracids + Anhinga. As phalacrocoracids lived in both Europe and Australia during the Late Oligocene and no older phalacrocoracid taxa are known, the biogeographical origin of cormorants remains unanswered. The phylogenetic relationships of extant taxa were not wholly resolved, but contrary to previous morphological analyses, considerable concordance was found with relationships recovered by recent molecular analyses. Microcarbo is sister to all other extant phalacrocoracids, and all Leucocarbo species form a well‐supported clade. © 2011 The Linnean Society of London, Zoological Journal of the Linnean Society, 2011, 163 , 277–314.     

Early Eocene lagomorph (Mammalia) from Western India and the early diversification of Lagomorpha

We report the oldest known record of Lagomorpha, based on distinctive, small ankle bones (calcaneus and talus) from Early Eocene deposits (Middle Ypresian equivalent, ca 53 Myr ago) of Gujarat, west-central India. The fossils predate the oldest previously known crown lagomorphs by several million years and extend the record of lagomorphs on the Indian subcontinent by 35 Myr. The bones show a mosaic of derived cursorial adaptations found in gracile Leporidae (rabbits and hares) and primitive traits characteristic of extant Ochotonidae (pikas) and more robust leporids. Together with gracile and robust calcanei from the Middle Eocene of Shanghuang, China, also reported here, the Indian fossils suggest that diversification within crown Lagomorpha and possibly divergence of the family Leporidae were already underway in the Early Eocene.     

Ancient DNA from an extinct Mediterranean micromammal—Hypnomys morpheus (Rodentia: Gliridae)—Provides insight into the biogeographic history of insular dormice

The dormice (Gliridae) are a family of rodents represented by relatively few extant species, though the family was much more species-rich during the Early Miocene. Intergeneric phylogenetic relationships among glirids in some cases remain unresolved, despite extensive molecular and morphological analyses. Uncertainty is greatest with respect to the relationships among fossil taxa and how extinct lineages are related to modern species. The fossil genus Hypnomys from the Balearic Islands (western Mediterranean Sea) includes the Late Pleistocene–Holocene species Hypnomys morpheus, which has variously been considered a close relative or subgenus of the extant Eliomys. In the present study, we sequenced ancient mitochondrial DNA from H. morpheus, which suggests a sister relationship with the extant members of Eliomys. In addition, the pairwise sequence variation between Hypnomys and Eliomys is higher than that observed between congeneric glirid species (e.g., many Graphiurus spp.), which allows us to reject the hypothesis that Hypnomys is a subgenus of Eliomys. Our molecular dating analyses suggest that Hypnomys and Eliomys diverged 13.67 million years ago (95% highest posterior density [HPD] = 7.39–20.07). The relatively early split between these genera together with the molar morphology of early representatives of Hypnomys points to a Middle-Late Miocene origin from a continental glirid with a complex molar pattern, such as Vasseuromys or a closely related genus.     

Gradual evolution in the African hunting dog lineage Systematic implications

The hunting dog, Lycaon pictus, is one of the most representative species of the extant African fauna and one of the most efficient predators in the World. This species is actually a relict within Sub-Saharan Africa, but its lineage is well recorded in Eurasia during the Pliocene, and in Eurasia and Africa during the Early Pleistocene, while its record during the Middle Pleistocene is not well documented. Though postcranial skeletal remains dating from the Early Pleistocene show a tetradactyl forelimb, a characteristic feature of the extant lycaon, unique among canids, the upper and lower dentitions show gradual evolution from a primitive morphology in the Late Pliocene specimens to the highly specialized trenchant carnassials of the extant predatory species. We propose a new systematics for the lineage, grouping all the forms within the genus Lycaon. To cite this article: B. Martínez-Navarro, L. Rook, C. R. Palevol 2 (2003).     

Late Pleistocene and Holocene chamois in Italy

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内蒙古阿拉善左旗克克阿木中渐新世早期哺乳动物化石的发现

本文简要报道了在内蒙古阿左旗克克阿木地点发现的哺乳动物化石,计4目10科11属12种.动物群的时代可能为中渐新世早期.     

A NEW SPECIES OF SINOLAGOMYS(LAGOMORPHA,OCHOTONIDAE)FROM XINJIANG

<正> More than 200 upper and lower jaws of ochotonid were found in the Late Oligocene of thenorthern part of the Junggar Basin,Xinjiang Uygur Autonomous Region,in the summer of1982.Sinolagomys.a unique Paleogene lagomorph with rootless(?) cheek teeth,was erected byBohlin(1937)based on the collections from Shargaltien and Taben-buluk,Gansu province.Upto now,it has been recorded from Middle Oligocene to the Lower Miocene of Gansu,Ninxia,Nei Mongol,and Xinjiang of China,and the Mongolian People's Republic.     

Evolutionary history of Spalacidae inferred from fossil occurrences and molecular phylogeny

1. The Spalacidae is a family of strictly subterranean rodents with a long evolutionary history. It is unclear how ecological changes have influenced the evolutionary history of these mammals, and the phylogenetic relationship of the subfamilies within Spalacidae is controversial.
2. Through compiling fossil records, reconstructing molecular phylogeny from molecular data, determining the date of divergence, and analysing their geographical evolution based on molecular data and fossil taxa, we explore the origin and evolutionary process of Spalacidae in detail. Diversification within Spalacidae dates to the Late Oligocene, approximately 25 million years ago, based on molecular data.
3. This family originated in South and East Asia in the Late Oligocene, and then split into four clades. The first clade includes Rhizomyinae, which was highly diversified in South Asia in the Early-to-Middle Miocene. Then Rhizomyinae from Asia migrated to northern Africa in multiple waves through the Afro-Eurasian land bridge. Its range largely contracted in the Late Miocene, notably in Central Asia. The second clade includes the extinct Tachyoryctoidinae, which was confined to East and Central Asia, and survived from the Late Oligocene to the Late Miocene. The third clade includes Spalacinae, which have remained around the Mediterranean region since the Late Oligocene with slight trend of northward expansion. The fourth clade is Myospalacinae. Ancient genera of this subfamily in East Asia dispersed eastward during the Late Miocene and reached northern China and south-east Russia.
4. The general distribution pattern of Spalacidae has persisted since the Late Miocene. Extinction of Tachyoryctoidinae and clear range contraction of Rhizomyinae in Central and East Asia are likely to have resulted from increased aridification, while the slight northward expansion of Myospalacinae and Spalacinae since the Quaternary was probably a response to a similar northward expansion of suitable vegetation for these animals.

     

NEW AUSTRALIAN OLIGOCENE TO MIOCENE RINGTAIL POSSUMS (PSEUDOCHEIRIDAE) AND REVISION OF THE GENUS MARLU

Abstract:  Four genera of extinct ringtail possums have been reported from Australian Oligocene to Miocene sediments since 1987. The genus Marlu was described from two species, M. kutjamarpensis and M. praecursor (Woodburne, Tedford and Archer), from the Miocene Kutjamarpu Local Fauna (Leaf Locality) and late Oligocene Wadikali Local Fauna respectively, of northern South Australia. New fossil material referable to this genus has been collected from the Leaf Locality and the Oligocene to Miocene Riversleigh World Heritage Area in northwest Queensland. Three new species, Marlu karya sp. nov. from middle Miocene Riversleigh local faunas and Marlu syke sp. nov. and Marlu ampelos sp. nov. from the Leaf Locality as well as early to middle Miocene Riversleigh local faunas are described. A revision and rediagnosis of the genus and published species are made following the re-examination of referred material in conjunction with the new material. Marlu is characterized by simple dentition and synapomorphies with extant pseudocheirids such as a conjoined postmetacristid and preentocristid on m1 and the loss of the entostylid ridge. New material from middle Miocene Riversleigh deposits has been referred to M. kutjamarpensis , extending the known distribution and age of that species. Re-examination of M. praecursor has revealed the presence of a small m1 entostylid ridge, contributing further to differences between M. praecursor and all other Marlu species and raising the possibility that Marlu is paraphyletic. The new material does not contradict a sister group relationship between ' Marlu ' (excluding M. praecursor ) and the Pliocene–Pleistocene genus Pseudokoala. Homology of the pseudocheirid m1 protostylid identified in species of Paljara , Pildra and Marlu with that observed in extant species is reconsidered. The 'protostylid' of the extinct genera is herein described as the buccal stylid.     

A new species of watering pot shell (Bivalvia: Anomalodesmata: Clavagelloidea) from the Miocene of the Murray Basin,South Australia

Abstract: A new species of penicillid watering pot shell, Kendrickiana coquinacola sp. nov., is described from the middle Miocene (Balcombian) Bryant Creek Formation of the Murray Basin, South Australia. The new species differs from the extant K. veitchi in its smaller size, much shorter posterior tube, fewer tubules in the anterior watering pot structure, absence of the pedal slit, discontinuous dorsolateral bands of pitted muscle scars on the internal surface of the anterior bulb and habit of cementing itself to the shells in its surrounding environment. The fossil record of Kendrickiana is reviewed. The record from the Dry Creek Sands is discounted, while a record for the extant K. veitchi from the earliest Pleistocene of York Peninsula is added. K. coquinacola indicates the highly derived anatomy of the genus evolved over a 10‐Ma period from the late Oligocene through the early Miocene.     

Age and historical biogeography of the pantropically distributed Spathelioideae (Rutaceae,Sapindales)

Aim The family Rutaceae (rue family) is the largest within the eudicot order Sapindales and is distributed mainly in the tropical and subtropical regions of both the New World and the Old World, with a few genera in temperate zones. The main objective of this study is to present molecular dating and biogeographical analyses of the subfamily Spathelioideae, the earliest branching clade (which includes eight extant genera), to interpret the temporal and spatial origins of this group, ascertaining possible vicariant patterns and dispersal routes and inferring diversification rates through time. Location Pantropics. Methods A dataset comprising a complete taxon sampling at generic level (83.3% at species level) of Spathelioideae was used for a Bayesian molecular dating analysis (beast ). Four fossil calibration points and an age constraint for Sapindales were applied. An ancestral area reconstruction analysis utilizing the dispersal–extinction–cladogenesis model and diversification rate analyses was conducted. Results Dating analyses indicate that Rutaceae and Spathelioideae are probably of Late Cretaceous origin, after which Spathelioideae split into a Neotropical and a Palaeotropical lineage. The Palaeotropical taxa have their origin inferred in Africa, with postulated dispersal events to the Mediterranean, the Canary Islands, Madagascar and Southeast Asia. The lineages within Spathelioideae evolved at a relatively constant diversification rate. However, abrupt changes in diversification rates are inferred from the beginning of the Miocene and during the Pliocene/Pleistocene. Main conclusions The geographical origin of Spathelioideae probably lies in Africa. The existence of a Neotropical lineage may be the result of a dispersal event at a time in the Late Cretaceous when South America and Africa were still quite close to each other (assuming that our age estimates are close to the actual ages), or by Gondwanan vicariance (assuming that our age estimates provide minimal ages only). Separation of land masses caused by sea level changes during the Pliocene and Pleistocene may have been triggers for speciation in the Caribbean genus Spathelia.     

Morphological phylogeny of <Emphasis Type="Italic">Geusibia</Emphasis> Jordan, 1932 (Siphonaptera: Leptopsyllidae) and the host–parasite relationship with pikas

Thirteen species of fleas of the genus Geusibia Jordan, 1932 were included in a cladistic analysis based on morphological characters. The results support Geusibia as a monophyletic group within Ctenophyllus Wagner, 1927 (sensu lato) and there are five diagnostic characters that distinguish Geusibia from related genera of Ctenophyllus (s. l). There is no evidence to support a subgeneric classification. We propose that G. ochotona Zhan, Cai & Wu, 1997 and G. lacertosa(Smit, 1975) are junior synonyms of G. torosa Jordan, 1932. After a reconciliation analysis, only two co-speciation events were found in the host–parasite association between Geusibia and pikas (Ochotona:Ochotonidae: Lagomorpha). Therefore, there are no co-evolutionary relationships between them, although a high host preference of Geusibiaspp. is recorded. The distribution and host selection of Geusibia, relative to host associations, are also discussed. Although most specimens of Geusibia are found on pikas, the host is not the definitive factor in the distribution of the genus. Some environmental factors and some host behaviors also determine the presence of Geusibia. Therefore, Geusibia is defined as a host-habitat-dependent flea