一种简单快速微量的无细胞蛋白合成系统

建立了一种简单快速微量的无细胞体系检测蛋白质合成的方法,在总体积５μｌ的体系中加２０μｌ兔网织红细胞裂解液,在３７℃培养３０ｍｉｎ能使其中的＾３Ｈ－Ｌｅｕ参入量达到最大。运用该方法可以筛选出植物组织中对真核细胞蛋白质生物合成具有强烈抑制作用的单链核糖体失活蛋白。     

丝瓜核糖体失活蛋白的分离与纯化

采用一种改进的方法,简便快速地从丝瓜(Luffa cylindrica)籽中得到丝瓜蛋白α和β.它们在SDS-PAGE上均呈一区带,其分子量分别为28000和29000.等电聚焦测定等电点均为10.它们对无细胞体系蛋白质合成都有强烈的抑制活性,其ID₅₀分别为10μg/L和50μg/L,是目前发现的单链核糖体失活蛋白中活性最高的.     

乙烯诱导下草莓果实采后RNA代谢与蛋白质合成活性的变化

草莓草果实在乳白时期采收（开花后约４０ｄ）,分别用１０μｌ／Ｌ,５０μｌ／Ｌ和１００μｌ／Ｌ的外源乙烯进行处理。处理后的果实大分子ＲＮＡ和ｐｏｌｙ（Ａ）＋ＲＮＡ水平以及ｐｏｌｙ（Ａ）＋ＲＮＡ与总ＲＮＡ的比例均有增高。果实体内ＲＮＡ酶活性和体外蛋白质的合成水平也升高。乙烯很可能是促进草莓果实成熟衰老的因素之一。     

抗EGFRvⅢ单链抗体的原核表达条件的优化及纯化

为了构建抗EGFRvⅢ单链抗体大肠杆菌表达体系,优化抗EGFRvⅢ单链抗体在大肠杆菌中的表达条件,并建立纯化方法。构建抗EGFRvⅢ单链抗体的pET-22b(+)重组质粒,将其转化到大肠杆菌BL21中,研究不同温度、不同浓度诱导剂对目的蛋白表达效率的影响。用Ni2+亲和层析纯化蛋白,并通过免疫印迹对其进行鉴定。抗EGFRvⅢ单链抗体重组质粒经NdeⅠ和XhoⅠ双酶切,菌落PCR和测序验证,结果显示重组质粒构建成功。SDS-PAGE结果表明BL21表达的目的蛋白相对分子量为29kD左右,与理论分子量一致,免疫印迹结果表明在29kD左右出现一条特异性条带,与SDS-PAGE结果一致。15℃和0.6μmol/L的诱导剂为抗EGFRvⅢ单链抗体的最佳诱导条件。本研究成功构建了抗EGFRvⅢ单链抗体大肠杆菌表达体系,并获得了大肠杆菌表达单链抗体的最佳诱导条件。     

人胎儿胸腺内bc1－2基因表达与分布

采用免疫酶组织化学与地高辛标记的单链ｃＤＮＡ探针原位杂交技术,研究了抗凋亡基因ｂｃｌ－２在人胎儿胸腺组织中的表达与分布。结果ｂｃｌ－２ｍＲＮＡ及其蛋白均优势定位于髓质区。提示胸腺中ｂｃｌ－２基因表达调控发生在转录水平;ｂｃｌ－２基因介导的细胞凋亡状态可能参与Ｔ淋巴细胞的成熟过程。     

核糖体单链失活蛋白在无细胞体系中的活性

核糖体单链失活蛋白是一类广泛分布于植物中的蛋白质,它能使真核细胞核糖体60S亚基失活。本文报道了一些核糖体单链失活蛋白的制备、纯化以及在兔网织红细胞裂解液中对蛋白质生物合成的抑制活性及它们对完整细胞的毒性。其中多数的核糖体单链失活蛋白是首次被分离纯化并对其毒性进行研究的。     

基于单链DNA开关调控的多功能生物电路

合成生物电路在生物传感及生物计算方面成为了广泛应用的工具。工程化生物电路系统具有良好的灵活性,同时也具备模块化的特征。在本文中,研究了基于单链DNA开关调控的多功能生物电路的构建方法。通过将计算机辅助设计的单链DNA开关作为核心控制元件,并利用长度为20 bp的toehold区域来激活单链DNA开关,驱动了简单的单向式、循环式以及级联的多层次的生物电路系统。在级联式电路系统中,通过调整单链DNA开关的结构,使信噪比从2.996变成5.274。同时,单链DNA开关作为长单链DNA（784 bp）的一部分,在无细胞蛋白质系统中实现了基因表达调控。因此,本文研究的工程化方法为今后复杂的人工生物电路的构建提供了坚实的技术基础。     

一步法提取植物DNA用于大规模RAPD分析

ＲＡＰＤ技术已广泛地用于植物的系统演化、种群多样性、群体遗传学及杂种种子纯度的鉴定等工作中〔１～３〕。本文基于快速节省的原则对碱液法提取植物ＤＮＡ进行一些改进。１材料与方法ＤＮＡ提取方法取１０～２０ｍｇ幼叶 ,加１００μｌ０ ５ｍｏｌ／ＬＮａＯＨ（或附加０ ５ %～１ ５ %巯基乙醇）研磨后 ,取４０μｌ研磨液加入２００μｌ１００ｍｍｏｌ／ＬＴｒｉｓ ＨＣｌｐＨ７ ６缓冲液（或附加０ ５%不溶性聚乙烯吡咯烷酮 ,ＰＶＰ）中 ,８０００×ｇ离心５ｍｉｎ,上清液即可用于ＰＣＲ反应。ＰＣＲ反应体系含１０ｍｍｏｌ／ＬＴｒｉ…     

基于图论模型的蛋白质结构类型的研究

提出了基于图论模型的H系数分类蛋白质结构为H结型和NH结型的方法.论述了蛋白质结构中序列不相邻的C_α原子之间的空间距离与序列相邻的C_α原子之间空间距离的关系.用此方法对PDB的66个单链蛋白质结构进行分类,结果显示H结型占18.2%.H结在全α型中出现比例较高,在全β型中出现比例较小,所以H结倾向出现在含有α螺旋的蛋白质结构中.     

基于单链DNA开关调控的多功能生物电路（英文）

合成生物电路在生物传感及生物计算方面成为了广泛应用的工具。工程化生物电路系统具有良好的灵活性,同时也具备模块化的特征。在本文中,研究了基于单链DNA开关调控的多功能生物电路的构建方法。通过将计算机辅助设计的单链DNA开关作为核心控制元件,并利用长度为20 bp的toehold区域来激活单链DNA开关,驱动了简单的单向式、循环式以及级联的多层次的生物电路系统。在级联式电路系统中,通过调整单链DNA开关的结构,使信噪比从2. 996变成5. 274。同时,单链DNA开关作为长单链DNA(784 bp)的一部分,在无细胞蛋白质系统中实现了基因表达调控。因此,本文研究的工程化方法为今后复杂的人工生物电路的构建提供了坚实的技术基础。     

Stimulation of protein synthesis by a 34 KD DNA-binding protein from human placenta

A 34 KD DNA-binding protein fraction from human placenta stimulated endogenous protein synthesis in rabbit reticulocyte and wheat-germ cell-free systems. Though the synthesis of several proteins were stimulated by the 34 KD protein, a dose-dependent increase of two polypeptides of molecular weights 42,000 and 51,000 were distinctly observed in reticulocyte lysates. The synthesis of the major protein (beta-globin) was not affected by the 34 KD protein. In both hemin supplemented and unsupplemented lysates, the ability of 34 KD protein to stimulate the synthesis of high molecular weight (HMW) proteins was drastically reduced by Mg++ and not by dsRNA.     

No effect of cAMP on protein synthesis in reticulocyte lysates.

The results of a series of experiments are interpreted to indicate that protein synthesis in reticulocyte lysates is not affected by the reticulocyte cAMP-dependent protein kinase. The catalytic subunit of this enzyme was isolated to apparent homogeneity. Also, the protein inhibitor of this protein kinase was isolated from muscle. Neither physiological concentrations of cAMP nor any of these protein components had a detectable effect on protein synthesis in reticulocyte lysates in the presence or absence of exogenous heme. Phosphorylation of the smallest subunit of eukaryotic initiation factor 2 or the 90,000 to 100,000-dalton peptide associated with eukaryotic initiation factor 2 kinase activity were not affected by the activity of the cAMP-dependent protein kinase under conditions in which exogenous heme has a pronounced effect on these reactions.     

The relationship between protein synthesis and heat shock proteins levels in rabbit reticulocyte lysates.

Besides heme deficiency, protein synthesis in rabbit reticulocyte lysates becomes inhibited upon exposure to a variety of agents that mimic conditions which induce the heat shock response in cells. This inhibition has been demonstrated to be due primarily to the activation of the heme-regulated eIF-2 alpha kinase (HRI) which causes an arrest in the initiation of translation. In this report, the sensitivity of protein synthesis in hemin-supplemented lysates to inhibition by Hg2+, GSSG, methylene blue, and heat shock was examined in six different reticulocyte lysate preparations. The extent to which translation was inhibited in response to Hg2+, GSSG, methylene blue, and heat shock correlated inversely with the relative levels of the 70-kDa heat shock proteins (hsp 70) and a 56-kDa protein (p56) present in the lysates determined by Western blotting. The ability of hemin to restore protein synthesis upon addition to heme-deficient lysates was also examined. While the restoration of protein synthesis correlated roughly with the levels of hsp 90 present, the results also suggest that the heme regulation of HRI probably involves the interaction of HRI with several factors present in the lysate besides hsp 90. A comparison of two lysate preparations, which had a 2-fold difference in their protein synthesis rates, indicated that the slower translational rate of the one lysate could be accounted for by its low level of constitutive eIF-2 alpha phosphorylation, with its accompanying decrease in the eIF-2B activity and lower level of polyribosome loading. The present study supports the notion that the previously demonstrated interaction of HRI with hsp 90, hsp 70, and p56 in reticulocyte lysates may play a direct role in regulating HRI activation or activity. We hypothesize that the competition of denatured protein and HRI for the binding of hsp 70 may be a molecular signal that triggers the activation of HRI in reticulocyte lysates in response to stress. Possible functions for p56 in the regulation of HRI activity are also discussed.     

2,3-Bisphosphoglycerate inhibits hemoglobin synthesis and phosphorylation of initiation factor 2 by casein kinase II in reticulocyte lysates

2,3-Bisphosphoglycerate inhibited protein synthesis in reticulocyte lysates with 50% inhibition at 2 mM. Glycerate 2,3-P2 increased the Mg2+ optimum for protein synthesis by chelation of Mg2+, but Mg2+ addition did not completely reverse the inhibition, suggesting an additional site of action. eIF-2 has been used to examine the activity of casein kinase II in reticulocyte lysates in response to glycerate 2,3-P2. When glycerate 2,3-P2 was increased to 4mM, phosphorylation of eIF-2 beta was increasingly inhibited. Thus inhibition of phosphorylation of translational components by casein kinase II can be correlated with inhibition of globin synthesis at physiological concentrations of glycerate 2,3-P2.     

Synthesis of an oligonucleotide inhibitor of protein synthesis in rabbit reticulocyte lysates analogous to that formed in extracts from interferon-treated cells.

A heat-stable, low-molecular-weight inhibitor of protein synthesis is formed on incubation of haemin-supplemented rabbit reticulocyte lysates with ATP and double-stranded RNA (dsRNA). It inhibits the translation of both added encephalomyocarditis virus RNA (EMC RNA) and endogeneous messenger RNA in reticulocyte lysates and mouse L-cell extracts. The enzyme responsible for the synthesis of the inhibitor binds to dsRNA and can be purified on a column of poly(I).poly (C) bound to an inert support. The highly purified enzyme in its stable column-bound state can be conveniently employed to synthesise the inhibitor and to label it with [3H]ATP, or [alpha-32P]ATP or [gamma-32P]ATP as substrate. The radioactive inhibitor synthesised in this way with material from rabbit reticulocyte lysates shows the same spectrum of resistance and sensitivity to alkali and a variety of enzymes as corresponding material similarly synthesised with extracts from interferon-treated mouse L-cells. The inhibitors from the two systems have comparable absorbance spectra, are chromatographically and electrophoretically indistinguishable and are apparently identical in specific activity in the inhibition of protein synthesis in the cell-free system. The inhibitor is also formed on inhibition of protein synthesis by dsRNA in reticulocyte lysates. On comparison of the spectrum of polypeptide products synthesised in response to EMC RNA in the reticulocyte lysate, the effects of the inhibitor or dsRNA were similar: a distinctly different effect was obtained with the haemin-controlled repressor, a known inhibitor of initiation. The significance of these results with respect to the mechanism of action of the inhibitor and its role in the inhibition observed in response to dsRNA is discussed.     

Effects of K+ concentration on inhibition of protein synthesis by trimer and tetramer triphosphates of 2',5'-oligoadenylates in rabbit reticulocyte lysates

The inhibition of protein synthesis by trimer or tetramer triphosphates of 2',5'-oligoadenylates (2-5A) in rabbit reticulocyte lysates is dependent on the concentration of K+ in the assay mixture. Based on studies using mRNA-dependent rabbit reticulocyte lysates and the degradation of [3H] polyadenylated mRNA, the greater inhibitory effects of trimer or tetramer triphosphates at the higher K+ is shown to be due to a more active 2-5A-dependent endoribonuclease (RNase L).     

Inhibition of peptide chain initiation by a nonhemin-regulated translational repressor from Friend leukemia cells.

A nonhemin-regulated translational repressor protein has been purified partially from the postribosomal supernatant fraction of Friend leukemia cells grown in the absence of dimethylsulfoxide. This repressor inhibits protein synthesis in lysates from rabbit reticulocytes or Friend leukemia cells and in a fractionated system using Artemia salina ribosomes, reticulocyte mRNA, and soluble components from reticulocytes. In contrast, the hemin-controlled repressor from reticulocytes does not inhibit protein synthesis in lysates from Friend leukemia cells. The repressor from Friend leukemia cells has no effect on poly(U)-directed synthesis of polyphenylalanine using reticulocyte ribosomes nor on the extension and release of nascent globin chains that were initiated in intact reticulocytes. It does not block completion of peptides on ribosomes isolated from reticulocytes incubated with NaF nor does it inhibit initiation factor-dependent formation of methionylpuromycin, but it inhibits globin mRNA-dependent methionylvaline synthesis. The Friend leukemia cell repressor promotes peptide synthesis-dependent breakdown of polysomes in reticulocyte lysates that appears to involve inhibition of ribosome reattachment to mRNA during peptide chain initiation. It is concluded that the Friend leukemia cell repressor blocks peptide initiation at a point between the addition of methionyl-tRNA^fMet to the ribosomal initiation complex and the NaF-sensitive reaction.     

Control of protein synthesis in human reticulocytes by heme-regulated and double-stranded RNA dependent eIF-2 alpha kinases

Heme-deficiency and double-stranded RNA (dsRNA) activate distinct cyclic 3':5'-AMP independent protein kinases (HRI and dsI, respectively) in rabbit reticulocyte lysates. These kinases inhibit protein synthesis by phosphorylating the 38,000 daltons (38K) subunit of the initiation factor eIF-2 (eIF-2 alpha). Using separation techniques to obtain a reticulocyte enriched fraction and reticulocyte-free erythrocytes, we have prepared lysates of these fractions from normal human whole blood. Human reticulocyte-enriched lysates contain the hemin-regulated and dsRNA-dependent protein kinases which inhibit protein synthesis and which phosphorylate rabbit eIF-2 alpha. An endogenous 38K polypeptide which co-migrates with rabbit eIF-2 alpha is also phosphorylated. In contrast, human mature erythrocytes contain little or no heme-regulated or dsRNA-dependent eIF-2 alpha kinase activities which are inhibitory of protein synthesis.     

Stimulation of the protein synthetic process by adenosine 3':5'-monophosphate and hexose phosphates in gel-filtered rabbit reticulocyte lysates.

The addition of 0.167 to 4.0 mM cAMP to gel-filtered rabbit reticulocyte lysates stimulates the initial rate and the extent of polypeptide synthesis. The stimulation is at the initiation step of polypeptide synthesis as measured by the (i) increased dipeptide, methionyl-valine, accumulation in the presence of the specific initiation inhibitor, pactamycin, and (ii) increased formation of the 40 S and 80 S initiation complex when gel-filtered lysates are incubated with [35S]Met-tRNAFMet. Furthermore, a synergistic stimulation of protein synthesis is observed when cAMP and hexose phosphates (which alone elicit a 1.8-fold stimulation of protein synthesis) are added simultaneously to gel-filtered rabbit reticulocyte lysates. These results indicate that cAMP and hexose phosphates are both essential to maintain the high rate of initiation.     

Inhibition of rabbit reticulocyte lysate protein synthesis by heavy metal ions involves the phosphorylation of the alpha-subunit of the eukaryotic initiation factor 2

The effect of heavy metal ions (in particular Cd2+, Hg2+, and Pb2+) on protein synthesis in hemin-supplemented reticulocyte lysates was investigated. Heavy metal ions were found to inhibit protein synthesis in hemin-supplemented lysates with biphasic kinetics. The shut off of protein synthesis occurred in conjunction with the phosphorylation of the alpha-subunit of the eukaryotic initiation factor (eIF) 2, the loss of reversing factor (RF) activity, and the disaggregation of polyribosomes. Addition of eIF-2 or RF to heavy metal ion-inhibited lysates restored protein synthesis to levels observed in hemin-supplemented controls. The stimulation of protein synthesis observed upon the addition of cAMP to heavy metal ion-inhibited lysates correlated with the inhibition of eIF-2 alpha phosphorylation and the restoration of RF activity. The partial restoration of protein synthesis observed upon the addition of MgGTP to heavy metal ion-inhibited lysates correlated with a partial inhibition of eIF-2 alpha phosphorylation. Addition of glucose 6-phosphate was found to have no effect on protein synthesis of eIF-2 alpha phosphorylation under these conditions. Antiserum raised to the reticulocyte heme-regulated eIF-2 alpha kinase inhibited the phosphorylation of eIF-2 alpha catalyzed by Hg2+-inhibited lysate. The inhibition of protein synthesis observed in the presence of heavy metal ions correlated with the relative biological toxicity of the ions. Highly toxic ions (AsO-2, Cd2+, Hg2+, Pb2+) inhibited protein synthesis by 50% at concentrations of 2.5-10 microM. Cu2+, Fe3+, and Zn2+, which are moderately to slightly toxic ions, inhibited protein synthesis by 50% at concentrations of 40, 250, and 300 microM, respectively. The data presented here indicate that heavy metal ions inhibit protein chain initiation in hemin-supplemented lysates by stimulating the phosphorylation of eIF-2 alpha apparently through the activation of the heme-regulated eIF-2 alpha kinase rather than through inhibition of the rate of eIF-2 alpha dephosphorylation.