海南岛海菖蒲种群克隆多样性和遗传结构

海草是生长在潮间带和潮下带的单子叶植物,由海草植物组成的海草床是生态系统服务价值最高的生态系统之一.然而,近几十年人类活动干扰、全球气候变化等因素导致海草床衰退严重.海菖蒲是分布于热带、体型最大的雌雄异株海草,我国位于该物种的分布北缘,本文对其克隆多样性和遗传结构进行研究,以期为该海草的保护提供参考.采用4对多态微卫星标记对采自海南岛4个地点的现存海菖蒲种群的样品进行基因型分型.结果表明:海菖蒲种群克隆多样性和遗传多样性较低,这与所研究种群处于分布区北缘有关;种群间遗传分化值范围较大(0.073~0.309),这可能是由于分布于不同港湾的种群间距离范围较大以及局域绝灭/再拓殖的遗传漂变效应所致;各种群未发现近期经历种群瓶颈的信号,很可能是由于种群内遗传多样性已经很低,种群减小未能导致遗传多样性明显降低.根据种群遗传特征,提出了重点保护种群的建议,鉴于目前我国海菖蒲等海草快速衰退的局面,应强化海草保护并实施海草床生态恢复.     

人工砍伐后短柄枹栎的居群遗传重建研究

为探讨人工砍伐后短柄枹栎(Quercus glandulifera var.brevipetiolata Nakai)居群的遗传关系,采用SSR分子标记技术,对短柄枹栎天然林中的4个次生林居群的遗传多样性、遗传结构进行研究。结果表明,筛选的7对SSR引物在4个居群内共揭示了101个等位基因。砍伐后恢复20年(20YAH)的短柄枹栎居群的遗传多样性最高,而砍伐后恢复1年(1YAH)和10年(10YAH)的遗传多样性相对较低。从长远来看,试验地居民特殊的砍伐习惯不会造成短柄枹栎天然林遗传多样性的变化。     

濒危植物翅果油树种群的遗传多样性和遗传分化研究

利用微卫星（SSR）标记对来自山西和陕西两省的7个翅果油树（Elaeagnus mollisDiels）种群进行遗传多样性和遗传结构研究。10对SSR标记共检测到126个位点,其中多态位点114个。在物种水平上,平均多态位点百分率为90.79%,有效等位基因数（Ne）、Nei基因多样性指数（H）和Shannon多样性指数（I）分别为1.6072、0.3166、0.4603;在种群水平上,多态位点百分率为61.99%,有效等位基因数（Ne）、Nei’s基因多样性指数（H）、Shannon多样性指数（I）分别为1.5445、0.2683、0.3815。遗传分化系数GST为0.2074,表明了翅果油树种群的遗传变异主要存在于种群内。基因流Nm为1.9111〉1,说明种群间基因交流可以阻止由于遗传漂变导致的遗传分化。聚类结果表明,翅果油树种群间的遗传距离与地理距离有一定的相关性,经Mantel检验,种群的地理距离与遗传距离之间呈正相关,但未达到显著水平（p〉0.05）。结果表明,遗传多样性水平与物种本身特性和不同干扰生境有关,濒危植物并不一定表现为遗传变异水平的降低。     

论克隆植物的遗传多样性

概述了克隆植物的类型与特点 ,对克隆植物的遗传多样性及其遗传结构的一些特点进行了综述 ,并讨论了克隆植物遗传变异的来源。总体而言 ,克隆植物拥有比早期推测大得多的遗传变异 ,虽然克隆种与其近缘有性繁殖种相比 ,遗传多样性较低 ,但广泛的遗传单态性却很罕见。克隆植物种群的遗传结构有所改变 ,广布基因型很少 ,大多数基因型仅分布于某一种群之内 ,种群间基因型多态性存在广泛的变异。不同克隆植物之间遗传多样性相差很大 ,遗传结构也有巨大差异。说明除生殖模式外 ,其他的一些因素 ,如地理分布范围、生境特点 ,散布方式和种群历史等都对克隆植物遗传多样性有重要影响。     

论克隆植物的遗传多样性

概述了克隆植物的类型与特点,对克隆植物的遗传多样性及其遗传结构的一些 特点进行了综述,并讨论了克隆植物遗传变异的来源。总体而言,克隆植物拥有比早期推测大得多的遗传变异,虽然克隆种与其近缘有性繁殖种相比,遗传多样性较低,但广泛的遗传单态性却很罕见。克隆植物种群的遗传结构有所改变,广布基因型很少,大多数基因型仅分布于某一种群之内,种群间基因型多态性存在广泛的变异。不同克隆植物之间遗传多样性相差很大,遗传结构也有巨大差异。说明除生殖模式外,其他的一些因素,如地理分布范围、生境特点,散布方式和种群历史等都对克隆植物遗传多样性有重要影响。     

Genetic diversity and population structure of invasive and native populations of Erigeron canadensis L.

小蓬草入侵地和原产地种群的遗传多样性和种群结构 外来入侵植物对全球生物多样性造成了危害。小蓬草(Erigeron canadensis L.)是危害最为严重的外来农业杂草之一,代表了洲际入侵的典型例子。本研究利用10个多态性SSR位点,分别对采自中国江苏和浙江省的入侵地和采自美国阿拉巴马州的原产地各5个种群、共计312个植株的基因型进行了遗传多样性和遗传结构分析。结果表明,江苏省和浙江省的入侵种群显示出与阿拉巴马州原产地种群相似的遗传多样性,表明入侵期间没有严重的遗传瓶颈。利用STRUCTURE对种群结构的分析结果显示,种群之间分化较低,在原产地和入侵范围内均只仅检测到两个基因群。在入侵种群中观察到的遗传多样性较高,表明在入侵初期可能存在多次引入或引入了遗传背景不同的繁殖体。上述研究为阐明小蓬草这一全球有害杂草在中国东部的入侵动态提供了新的证据。在防除实践中,应注意防范小蓬草入侵种群和本地种群之间的种子基因流传播,阻止除草剂抗性植株的引入和扩散。     

黄山花楸种群遗传多样性研究

利用RAPD技术,对黄山花楸(Sorbus amabilis)自然分布区的13个自然种群的遗传多样性进行了研究,从40个10碱基随机引物中筛选出能产生稳定多态性标记的引物14个,共扩增出105个位点,其中多态性位点30个,占28．6％,应用UPGMA法和Neighbor-Joining法对遗传距离进行聚类分析构建树系图。结果表明,黄山花楸自然种群具有较低的遗传多样性,对环境变化的适应能力较差;其种群间的遗传差异与其地理分布有关;黄山花楸自身的特殊进化历史和人为砍伐以及自然灾害(火灾、病虫害等)和小种群的遗传漂变作用是黄山花楸遗传多样性水平低的主要原因,也是其濒危的主要原因。     

以昆虫作为指示生物评估森林健康的生物学与生态学基础

昆虫是森林生物多样性的重要组成部分,在森林生态系统主体群落中,昆虫与植物密切关联.森林害虫胁迫及昆虫多样性变动,对于评估森林生态系统健康状况具有重要价值.昆虫多样性可用于对森林生态系统健康的快速评估,如基于昆虫指示生物评价森林生态系统的毒害水平、物种丰富度、多样性水平、靶标昆虫的地位和特有种水平等.针对影响森林环境健康的重要干扰因子,本文阐述了应用昆虫作为指示性生物监测与评估森林健康状况的生物与生态学依据,讨论了昆虫种群,特别是珍稀物种种群在生境破碎干扰下的种群波动,以及大气污染、干旱和二氧化碳浓度升高等对昆虫种群密度与分布的影响等.同时,分析了昆虫作为指示性生物监测与评估森林环境健康所存在的问题.     

珍稀濒危植物海南粗榧种群遗传多样性研究

利用RAPD技术对珍稀濒危植物海南粗榧(Cephalotaxus mannii Hook . f.)遗传多样性水平、分布、濒危原因及物种保护等问题进行了探讨.结果表明:1. 海南粗榧在海南岛的5个取样地点表现出低水平的遗传多样性,对环境变化的适应能力不强; 2. 海南粗榧种群内和种群间的遗传多样性所占比例有很大差异,绝大部分变异分布于种群内(DNA多样性为85.1%);种群间仅有较低程度的分化;3. 人为砍伐、植被破坏、台风、被食及遗传漂变是海南粗榧遗传多样性低水平的主要原因,也是物种濒危的主要原因;4. 对于呈零星分布的濒危植物海南粗榧的研究与保护,应充分考虑个体小环境之间的差异,考察影响小种群的随机因素;5. 应采取有力措施,就地保护现有种群,并寻求适当的方法迅速扩展种群,降低基因丧失率;选择遗传多样性较高且破坏相对较小的黎母岭种群作为保护重点;同时应加强对其他种群的保护与管理;6. 海南粗榧种群内、种群间的遗传多样性在不同引物之间有较大差别;多态性位点百分率则是种群间的变化大于引物间的变化.     

珍稀濒危植物海南粗榧种群遗传多样性研究

利用RAPD技术对珍稀濒危植物海南粗榧（Cephalotaxus manniiHook.f.)遗传多样性水平,分布、濒危原因及物种保护等问题进行了探讨。结果表明：1、海南粗榧在海南岛的5个取样地点表现出低水平的遗传多样性,对环境变化物适应能力不强;2、海南粗榧种群内和种群间的遗传多样性所占比例有很大差异,绝大部分变异分布于种群内（DAN多样性为85.1%);种群间仅有较低程度的分化;3、人为砍伐,植被破坏,台风、被食用遗传漂变是海南粗榧遗传多样性低水平的主要原因,也是物种濒危的主要原因;4、对于呈零星分布的濒危植物海南粗榧的研究与保护,应充分考虑个体小环境之间的差异。考虑影响小种群的随机因素;5、应采取有力措施,就地保护现有种群,并寻求适当的方法迅速扩展种群,降低基因丧失率;选择遗传多样性较高且破坏相对较小的黎母岭种群作为保护重点;同时应加强对其他种群的保护与管理;6、海南粗榧种群内,种群音质遗传多样性在不同引物之间有较大差别。多态性位点百分率则是种群间的变化大于引物间的变化。     

The Transferability of Nuclear Microsatellite Markers in Four Castanopsis Species to Castanopsis tibetana (Fagaceae)

Castanopsis tibetana is a typical and dominant component in subtropical evergreen broad leaved forests of China. However, its genetic diversity and long term persistence have been jeopardized by habitat fragmentation. To examine its genetic diversity and genetic structure, cross species amplification of 51 microsatellite loci which are derived from four congeneric species, ie., Castanopsis chinensis, Csclerophylla, Ccuspidata and Csieboldii, were tested in Ctibetana.Thirty five loci were successfully amplified in Ctibetana, among them 11 were polymorphic across four wild populations of Ctibetana (24 individuals in total). Genetic diversity of four Ctibetana populations (Jiangxi) was relatively low. The number of alleles (NA) ranged from 2 to 7 (average 45) and the ranges of observed (HO) and expected (HE) heterozygosities were 0505 and 0471,respectively. The results will facilitate the study and conservation of genetic diversity of Ctibetana.     

Structure and diversity of remnant natural evergreen broad-leaved forests at three sites affected by urbanization in Chongqing metropolis,Southwest China

Evergreen broad-leaved forests (EBLFs, lucidophyllous forests) are vegetation types characteristic of East Asia. The extent of EBLFs has decreased significantly due to long-term anthropogenic disturbance, and remnant EBLFs in urban area are rare and important landscape types contributing to biodiversity and sustainable development. This study focuses on remnant EBLFs on Mt. Gele (GL), Mt. Tieshanping (TSP), and Mt. Jinyun (JY), located from the inner city to outskirts of Chongqing metropolis, Southwest China. Species of Theaceae, Lauraceae, Symplocaceae, and other families, which are essential floristic components of primary EBLFs, were still the main components at the three sites. GL and JY showed higher biodiversity, with richer heliophytes and shade-tolerant species, respectively. Castanopsis carlesii var. spinulosa was the sole dominant species at all three sites in woody layer, with codomination by Pinus massoniana and Cinnamomum camphora at GL and by Machilus pingii and Castanopsis fargesii at JY; these evergreen broad-leaved trees all showed inverse-J or sporadic-shaped size distribution with large numbers of small stems, but the conifer tree Pinus massoniana showed unimodal distribution with small stems at GL. The height growth of tree species, especially Castanopsis carlesii var. spinulosa, was increasingly restricted from JY to TSP to GL. Sprouting is an important life history strategy at community and population level, and differences were exhibited from GL to TSP to JY. A rural–urban gradient from JY to TSP to GL was indicated in this study. Species composition, biodiversity, and stand structure of these remnant EBLFs showed obvious differences along this gradient, and conservation responses to address the effects of urbanization need to be carefully considered.     

Glacial bottleneck and postglacial recolonization of a seed parasitic weevil, Curculio hilgendorfi, inferred from mitochondrial DNA variation

Climatic changes during glacial periods have had a major influence on the recent evolutionary history of living organisms, even in the warm temperate zone. We investigated phylogeographical patterns of a weevil Curculio hilgendorfi (Curculionidae), a host-specific seed predator of Castanopsis (Fagaceae) growing in the broadleaved evergreen forests in Japan. We examined 2709 bp of mitochondrial DNA for 204 individuals collected from 62 populations of the weevil. Four major haplogroups were detected, in southwestern and northeastern parts of the main islands and in central and southern parts of the Ryukyu Islands. The demographic population expansion was detected for the two groups in the main islands but not for the Ryukyu groups. The beginning time of the expansion was dated to 39 000–59 000 years ago, which is consistent with the end of the last glacial period. Our data also demonstrated that the southwestern population of the main islands has experienced a more severe bottleneck and more rapid population growth after glacial ages than the northeastern population. At least three refugial areas in the main islands were likely to have existed during the last glacial periods, one of which had not previously been recognized by analyses of intraspecific chloroplast DNA variation of several plant species growing in the broadleaved evergreen forests. Our results represent the first phylogeographical and population demographic analysis of an insect species associated with the broadleaved evergreen forests in Japan, and reveal more detailed postglacial history of the forests.     

湖北省栲类林群落学特征研究

通过设置样方,在全面调查湖北省内各栲类林的基础上,对湖北省栲类林的物种组成、区系成分、群落结构及类型,以及影响群落结构的环境因子进行研究。结果显示：（1）在所调查的湖北省栲类林中共记录维管植物88科210属376种,其中乔木层中常绿树种有73种、落叶树种有48种,构成了以常绿树种为主的典型常绿阔叶林;（2）从科的区系组成来看,热带成分多于温带成分;从属的区系组成来看,热带成分与温带成分大体相当;（3）湖北栲类林生物多样性有显著的经度和海拔格局,但受纬度影响不大。土壤因子中仅氮含量对物种多样性格局影响显著;（4）湖北省栲类林可分为5个群系,即：苦槠（Castanopsis sclerophylla（Lindl.）Schott）林、钩栲（Castanopsis tibetana Hance）林、栲（Castanopsis fargesii Franch）林、甜槠（Castanopsis eyrei（Champ.）Tutch.）林和罗浮栲（Castanopsis faberi Hance）林。在各环境因子中,海拔、经度、坡度和土壤磷含量对群落组成的影响最大,地理因子和土壤因子对栲类林群落组成影响的总解释率为68.94%;（5）在5个群系中大部分乔木及栲属植物的径级分布呈单峰形,种-多度分布表现为典型的具有少数常见种、多个偶见种的倒“J”形曲线。研究表明湖北省栲类林物种多样性高,生物多样性丰富,植物区系热带成分明显,主要包含5个群系,地理因子和土壤因子可以解释大部分的群落物种组成变异。该研究可为湖北省常绿阔叶林保护和管理提供理论依据和数据支持。     

A population genetic evaluation of ecological restoration with the case study on <Emphasis Type="Italic">Cyclobalanopsis myrsinaefolia</Emphasis> (Fagaceae)

The ultimate goal of ecological restoration is to create a self-sustaining ecosystem that is resilient to perturbation without further assistance. Genetic variation is a prerequisite for evolutionary response to environmental changes. However, few studies have evaluated the genetic structure of restored populations of dominant plants. In this study, we compared genetic variation of the restored populations with the natural ones in Cyclobalanopsis myrsinaefolia, a dominant species of evergreen broadleaved forest. Using eight polymorphic microsatellite loci, we analyzed samples collected from restored populations and the donor population as well as two other natural populations. We compared the genetic diversity of restored and natural populations. Differences in genetic composition were evaluated using measurements of genetic differentiation and assignment tests. The mean number of alleles per locus was 4.65. Three parameters (A, A _R, and expected heterozygosity) of genetic variation were found to be lower, but not significantly, in the restored populations than they were in the natural populations, indicating a founder effect during the restoration. Significant but low F _ST (0.061) was observed over all loci, indicating high gene flow among populations, as expected from its wind-pollination. Differentiation between the two restored populations was smallest. However, differences between the donor population and the restored populations were higher than those between other natural populations and the restored populations. Only 13.5% and 25.7% individuals in the two restored populations were assigned to the donor population, but 54.1 and 40% were assigned to another natural population. The genetic variation of the donor population was lowest, and geographic distances from the restoration sites to the donor site were much higher than the other natural populations, indicating that the present donor likely was not the best donor for these ecological restoration efforts. However, no deleterious consequences might be observed in restored populations due to high observed heterozygosity and high gene flow. This study demonstrates that during the restoration process, genetic structures of the restored populations may be biased from the donor population. The results also highlight population genetic knowledge, especially of gene flow-limited species, in ecological restoration.     

The effect of deforestation on the genetic diversity and structure in <Emphasis Type="Italic">Acer saccharum</Emphasis> (Marsh): Evidence for the loss and restructuring of genetic variation in a natural system

The level and distribution of genetic diversity can be influenced by species life history traits and demographic factors, including perturbations that might produce population bottlenecks. Deforestation and forest fragmentation are common sources of population disturbance in contemporary populations of forest ecosystems. Although the genetic effects of forest fragmentation and deforestation have been examined by assessing levels of genetic variation in forest fragments that remain after logging, few considerations have been made of the populations that re-colonize once-cleared areas. Here we examine the effects of human-mediated population bottlenecks on the level and distribution of genetic diversity in natural populations of the long-lived forest tree species, Acer saccharum (sugar maple). We compared genetic variation and structure for populations of sugar maple found within old-growth forested area and in area that has re-colonized since logging. In this study the percent polymorphic loci and allelic richness estimates were reduced in the logged populations compared to old-growth populations. Jackknifed estimates of population genetic differentiation showed significantly higher differentiation among logged populations, with this result being consistently seen when individuals within populations were grouped according to diameter at breast height. The result of decreased genetic variation and higher levels of genetic structure among logged populations suggests that even one extensive bout of logging can alter the level and distribution of genetic variation in this forest tree species.     

Allozyme variation in the three extant populations of the narrowly endemic cycad Dioon angustifolium Miq. (Zamiaceae) from North-eastern Mexico

BACKGROUND AND AIMS: Dioon angustifolium was considered within D. edule. Recent morphometric and allozyme studies on D. edule have shown that D. angustifolium has originated from geographic isolation and is therefore considered to be a separate species. This cycad is endemic to north-eastern Mexico and is known only from three populations in the Sierra Madre Oriental mountain chain. Its populations are small when compared with its southern relative D. edule. In this study, genetic variation was determined within and between populations of D. angustifolium and the genetic consequences of habitat fragmentation and isolation of populations of this species were assessed. METHODS: Allozyme electrophoresis of 14 presumptive loci was used. The data were analysed with statistical approximations for estimating genetic diversity, structure, gene flow and recent genetic bottlenecks. KEY RESULTS: Means and standard deviations of genetic diversity estimators were: number of alleles per locus (A = 1.67 +/- 0.23), percentage of polymorphic loci (P = 52.4 +/- 23 %) and expected heterozygosity (H(E) = 0.218 +/- 0.093). The genetic variation attributable to differences among populations was 16.7 %. Mean gene flow between paired populations was Nm = 1.55 +/- 0.67, which is similar to that reported for endemic plant species of narrow geographical distribution and species with gravity-dispersed seed. A recent bottleneck is detected in the populations studied. CONCLUSIONS: Dioon angustifolium presents high levels of genetic diversity compared with other cycad species, in spite of small population sizes. The recent bottleneck effect did not effectively reduce the genetic variation to the extent of eliminating these populations. The distribution of D. angustifolium appears to be the result of historical biogeographical effects related to the Pleistocene glaciations. It is recommended that this species be catalogued in the IUCN Red List of Threatened Species and conservation efforts be made to preserve it.     

Leading-edge populations do not show low genetic diversity or high differentiation in a wind-pollinated tree

Climate changes can shift species’ ranges. Knowledge on genetic variation of the leading-edge populations provides critical information to understand responses and adaptation of plants to projected climate warming. To date, the research into genetic variation of leading-edge populations has been limited, particularly in the role of wind-mediated pollen flow in maintaining high genetic variation. Castanopsis sclerophylla (Fagaceae) is a wind-pollinated and gravity-dispersed tree. In the present study, we used seven polymorphic microsatellites to genotype 482 samples from five leading-edge and 12 non-edge populations. Significant effects of recent population bottleneck events were found in three of the five leading-edge populations, indicating that the leading-edge populations might have been recolonized after the Last Glacial Maximum. Genetic diversity was higher, though not significantly, in leading-edge than in non-edge populations. Relationship between genetic diversity and latitude indicated an increasing trend of genetic diversity towards leading-edge populations. No significant difference in genetic differentiation was found between leading-edge and non-edge populations. The inconsistence with the general predictions by leading-edge colonization model could be explained by high gene flow via pollen grains. Pollen-mediated gene flow could maintain high genetic diversity within and low differentiation among leading-edge populations. In response to climate warming, high genetic variation may provide leading-edge populations raw materials for evolutionary adaptation to future environmental conditions.     

Colonization, genetic diversity, and evolution in the Swedish sand lizard, Lacerta agilis (Reptilia, Squamata)

The Swedish sand lizard ( Lacerta agilis ) is a relict species from the post-glacial warmth period. From the geological history of this region, and more recent data on population fragmentation due to disturbance by man, it can be surmised that the Swedish sand lizards passed through at least one population bottleneck in relatively recent times. We tested this hypothesis by investigating the amount and structuring of genetic variability in six microsatellite loci in ten lizard populations from different parts of Sweden. We contrasted these data against those from a Hungarian population which we have reason to assume strongly resembles the founder population for Swedish sand lizards. The average number of alleles per locus in Sweden was 3.3, and these alleles were common in almost all populations, whereas the average number of alleles in the Hungarian population was 8.0. Likewise, the level of expected heterozygosity was lower in the Swedish populations (0.45) compared to the Hungarian population (0.70). The lower variability in Swedish populations is probably a consequence of a common population bottleneck during the immigration subsequent to the latest glacial period. The remaining variability is strongly subdivided between populations (F_ST=0.30) with the main genetic differences being between rather than within populations. Despite the marked isolation of the populations and the present small population sizes (N= 10–300 adults), the Swedish relict populations show a surprisingly high level of observed heterozygosity, indicating that small population size is probably a recent phenomenon.     

Post-bottleneck genetic diversity of elephant populations in South Africa, revealed using microsatellite analysis

Widespread hunting had fragmented and severely reduced elephant populations in South Africa by 1900. Elephant numbers increased during the 1900s, although rates of recovery of individual populations varied. The Kruger National Park elephant population increased rapidly, to more than 6000 by 1967, with recruitment boosted by immigration from Mozambique. The Addo Elephant National Park population was reduced to 11 elephants in 1931 and remains relatively small (n = 325). Loss of genetic variation is expected to occur whenever a population goes through a bottleneck, especially when post-bottleneck recovery is slow. Variation at nine polymorphic microsatellite loci was analysed for Kruger and Addo elephants, as well as museum specimens of Addo elephants shot prior to the population bottleneck. Significantly reduced genetic variation and heterozygosity were observed in Addo in comparison to Kruger (mean alleles/locus and H(E): Addo 1.89, 0.18; Kruger 3.89, 0.44). Two alleles not present in the current Addo population were observed in the museum specimens. Addo elephants represent a genetic subset of the Kruger population, with high levels of genetic differentiation resulting from rapid genetic drift. The Kruger population is low in genetic diversity in comparison to East African elephants, confirming this population also suffered an appreciable bottleneck.