Effect of microorganisms and seasonal factors on the isotope composition of organic carbon from Black Sea suspensions

The isotopic composition of particulate organic carbon (POC) from the Black Sea deep-water zone was studied during a Russian-Swiss expedition in May 1998. POC from the upper part of the hydrogen sulfide zone (the C-layer) was found to be considerably enriched with the 12C isotope, as compared to the POC of the oxycline and anaerobic zone. In the C-layer waters, the concurrent presence of dissolved oxygen and hydrogen sulfide and an increased rate of dark CO2 fixation were recorded, suggesting that the change in the POC isotopic composition occurs at the expense of newly formed isotopically light organic matter of the biomass of autotrophic bacteria involved in the sulfur cycle. In the anaerobic waters below the C-layer, the organic matter of the biomass of autotrophs is consumed by the community of heterotrophic microorganisms; this results in weighting of the POC isotopic composition. Analysis of the data obtained and data available in the literature allows an inference to be made about the considerable seasonable variability of the POC delta 13C value, which depends on the ratio of terrigenic and planktonogenic components in the particulate organic matter.     

Biogeochemical properties of a tropical swamp forest ecosystem in southern Thailand

The distributions of organic matter in the tropical swamps in southern Thailand are reported. The concentrations of particulate and dissolved organic carbon (POC and DOC) in the Bang Nara River, which drains swamp forests and nearby paddy fields, were 2.9 ± 2.0 and 6.2 ± 1.3 mg C l⁻¹, respectively. Although the variation was large, DOC concentration in the Bang Nara River seemed to be higher than POC in November 1992 (DOC/POC ratio, 2.8 ± 2.2). River waters from the upland areas were characterized by low POC and DOC concentrations as compared with Bang Nara River water. The δ¹³C values of POC and river sediments were useful to distinguish between organic matter originating in upland and swamp areas. It is suggested that the distributions of organic matter and its isotopic composition reflect the difference in drainage characteristics between lowland swamp and upland areas. Isotopic analyses of plant leaves and soils revealed that the swamp forest ecosystems were characterized by low δ¹³C and low δ¹⁵N values, which suggested low efficiency of water use by plants and large contributions of atmospheric deposition of nitrogen, respectively. Although CO₂ recycling in the forest might be an important factor determining the δ¹³C values of understory plants, the main process in carbon metabolism of tropical swamp forests would be CO₂ exchange between the atmosphere and forest canopy. Received: May 1, 2001 / Accepted: September 28, 2001     

Carbon isotopic composition in suspended organic matter and bottom sediments of the East Arctic seas

The samples of water and bottom sediments of the East Siberian and Chukchi Seas collected during the second Russian-American RUSALCA expedition were used to analyze patterns of the isotopic composition of carbon in the organic matter (OM) of suspended material (SOM) and bottom sediments (BOM). Similar to other marine environments, the SOM isotopic composition depended on the ratio between the terrigenous and planktonic OM, both in the water body as a whole and in its parts. Thus, in the East Siberian Sea the carbon of SOM was poorer in ¹³C (??¹³C = ?24.51??) than the open part of the more productive Chukchi Sea (??¹³C = ?22.16??). In the less productive coastal waters of the Chukchi Sea, the ratio of terrigenous OM increased, resulting in a ??¹³C shift to lower values (?23.40??). Due to the influx of reduced products of anaerobic diagenesis of the sediments, elevated total number of microorganisms and dark CO₂ fixation were found in the near-bottom water at the water-sediment biogeochemical barrier. The newly formed biomass of autotrophic microorganisms shifted the carbon isotopic composition of the near-bottom suspended material to more positive ??¹³C values, with the average values of ?23.39 and ?20.37?? for the East Siberian and Chukchi Sea, respectively. Changes in the carbon isotopic composition of OM resulting from microbial activity continued in the upper sediment layers. When the rate of biomass synthesis increased that of biomass consumption, the ¹³C content increased further. At higher rates of OM mineralization, ¹²C accumulated in its remaining part.     

Biological fractionation of stable carbon isotopes at the aerobic/anaerobic water interface of meromictic water bodies

Mass-spectrometric investigation of carbon isotope composition (δ¹³C) was carried out for suspended organic matter and dissolved mineral compounds for the water column of some meromictic water bodies differing in salinity and trophic state. As a rule, a more pronounced carbon isotope fractionation (resulting from the metabolism of phytoplankton and anoxygenic phototrophic bacteria) was revealed in the zones of enhanced oxygenic and anoxygenic photosynthesis. Carbon isotope fractionation at the border between oxidized and reduced waters depends both on the activity of microbial communities and on the dominant species of phototrophic microorganisms. Analysis of the distribution profiles of the isotopic composition of suspended organic matter and dissolved mineral carbon revealed active mineralization of the organic matter newly formed via anoxygenic photosynthesis in the monimolimnion by microbial communities, resulting in the release of isotopically light carbon dioxide. Mineral carbon in the anaerobic zones of highly productive meromictic water bodies is therefore enriched with the light ¹²C isotope.     

Origin and cycling of riverine inorganic carbon in the Sava River watershed (Slovenia) inferred from major solutes and stable carbon isotopes

The Sava River and its tributaries in Slovenia represent waters strongly influenced by chemical weathering of limestone and dolomite. The carbon isotopic compositions of dissolved inorganic carbon (DIC) and suspended organic carbon (POC) fractions as well as major solute concentrations yielded insights into the origin and fluxes of carbon in the upper Sava River system. The major solute composition was dominated by carbonic acid dissolution of calcite and dolomite. Waters were generally supersaturated with respect to calcite, and dissolved CO₂ was about fivefold supersaturated relative to the atmosphere. The δ¹³C of DIC ranged from −13.5 to −3.3‰. Mass balances for riverine inorganic carbon suggest that carbonate dissolution contributes up to 26%, degradation of organic matter ∼17% and exchange with atmospheric CO₂ up to 5%. The concentration and stable isotope diffusion models indicated that atmospheric exchange of CO₂ predominates in streams draining impermeable shales and clays while in the carbonate-dominated watersheds dissolution of the Mesozoic carbonates predominates.     

Temporal variability of particulate organic carbon,nitrogen and phosphorus in the Northern Adriatic Sea

The particulate organic carbon (POC), nitrogen (PN) and phosphorus (PP) vertical distribution along the water column and temporal variability in coastal and offshore waters of the Northern Adriatic Sea were related to the hydrodynamic conditions and biological processes. Fresh water inputs from the Po and Adige rivers enhance primary production, resulting in high POC, PN and PP concentrations at the surface. In offshore waters, POC and PN concentrations were about 3–4 times less than in the coastal waters, while PP were up to 10 times lower, highlighting a marked phosphorus depletion. In the bottom layer, the POC content decreases due to the strong density gradients which separate bottom waters with prevailing degradation processes. Short term 48 h-variability of POC, PN and PP in the coastal waters was determined to a great extent by variations in the spreading of river plumes at the surface and by nepheloid layers and resuspension processes in the bottom waters. The particulate matter in the Adriatic offshore waters is extremely depleted as regards particulate phosphorus and is characterised by C_org:P and N:P ratios higher than the Redfield ratio.     

Geochemical Peculiarities of the Carbonate Constructions Formed during Microbial Oxidation of Methane under Anaerobic Conditions

The aragonite constructions of the Black Sea are formed in a stable anaerobic zone and are a perfect object to study the natural mechanism of anaerobic methane oxidation. The most probable pathway of methane oxidation is its methanogen-mediated reaction with bicarbonates, dissolved in seawater, with the formation of water and acetate, which is then consumed by other components of the anaerobic community. Comparison of the ¹³C values of carbonate minerals and organic matter once more demonstrated that the formation of the organic matter of biomass is accompanied by intense fractionation of carbon isotopes, as a result of which the total organic matter of biomass acquires an extremely light isotopic composition, characterized by ¹³C values as low as –83.8.     

Microbial Processes of the Carbon and Sulfur Cycles in Lake Mogil'noe

In the beginning of the summer of 1999, complex microbiological and biogeochemical investigations of meromictic Lake Mogil'noe (Kil'din Island, Barents Sea) were carried out. The analysis of the results shows a clearly pronounced vertical zonality of the microbial processes occurring in the water column of the lake. To a depth of 8 m, the total number and activity of microorganisms was limited by the relatively low content of organic matter (OM). In the upper part of the hydrogen-sulfide zone of the lake (beginning at a depth of 8.25 m), the content of particulate OM and the microbial number sharply increased. In this zone, the daily production of OM during anaerobic photosynthesis at the expense of massive development of colored sulfur bacteria reached 620 mg C/m², which was twofold greater than the daily production of phytoplankton photosynthesis and led to a considerable change in the isotopic composition (¹³C) of the particulate OM. In the same intermediate layer, the highest rates of sulfate reduction were recorded, and fractionation of stable sulfur isotopes occurred. Below 10 m was the third hydrochemical zone, characterized by maximum concentrations of H₂S and CH₄and by a relatively high rate of autotrophic methanogenesis. The comparison of the results obtained with the results of investigations of previous years, performed in the end of summer, shows a decrease in the intensity of all microbial processes inspected. An exception was anoxygenic photosynthesis, which can utilize not only the de novo formed H₂S but also the H₂S accumulated in the lake during the winter period.     

Sources of Lipids in Anoxic Lacustrine Sediments Using Stable Carbon Isotopes

The origin of organic matter in recent anoxic sediments of the alpine Lake Bled (NW Slovenia) was determined by analyzing the carbon isotope composition of lipid biomarkers, i.e. alkanes, alcohols, sterols and fatty acids, busing compound specific, carbon isotope analysis. The results indicate that, although biomarker analysis indicated mostly plankton and terrestrial sources for lipids, an important part of sedimentary lipids, especially sterols, are autochthonous, of anaerobic microbial (methanotrophic) origin. Marked differences were observed in δ¹³C values of lipid biomarkers in settling particles collected 2 m above the bottom, and in δ¹³C values determined in surface sediment. These results indicate that even some compounds found in both particulate organic matter and sediments are the same in terms of chemical structures, their sources can be different and thus, isotopic composition should be used as a complementary tool for source identification.     

Particulate organic and dissolved inorganic carbon stable isotopic compositions in Taylor Valley lakes,Antarctica: the effect of legacy

In perennially ice-covered lakes of Taylor Valley, Antarctica, “legacy”, a carryover of past ecosystem events, has primarily been discussed in terms of nutrient and salinity concentrations and its effect on the current ecology of the lakes. In this study, we determine how residual pools of ancient carbon affect the modern carbon abundance and character in the water columns of Lakes Fryxell, Hoare, and Bonney. We measure the stable carbon isotopic compositions and concentrations of particulate organic carbon (POC) and dissolved inorganic carbon (DIC) in the water column of these lakes over four seasons (1999–2002). These data are presented and compared with all the previously published Taylor Valley lacustrine carbon stable isotopic data. Our results show that the carbon concentrations and isotopic compositions of the upper water columns of those lakes are controlled by modern processes, while the lower water columns are controlled to varying degrees by inherited carbon pools. The water column of the west lobe of Lake Bonney is dominated by exceptionally high concentrations of DIC (55,000–75,000 μmol l⁻¹) reflecting the long period of ice-cover on this lake. The east lobe of Lake Bonney has highly enriched δ¹³C_DIC values resulting from paleo-brine evaporation effects in its bottom waters, while its high DIC concentrations provide geochemical evidence that its middle depth waters are derived from West Lake Bonney during a hydrologically connected past. Although ancient carbon is present in both Lake Hoare and Lake Fryxell, the δ¹³C_DIC values in bottom waters suggest dominance by modern primary productivity-related processes. Anaerobic methanogenesis and methanotrophy are also taking place in the lower water column of Lake Fryxell with enough methane, oxidized anaerobically, to contribute to the DIC pool. We also show how stream proximity and high flood years are only a minor influence on the carbon isotopic values of both POC and DIC. The Taylor Valley lake system is remarkably stable in both inter-lake and intra-lake carbon dynamics. Handling editor: K. Martens     

Abundance and activity of microorganisms at the water-sediment interface and their effect on the carbon isotopic composition of suspended organic matter and sediments of the Kara Sea

At ten stations of the meridian profile in the eastern Kara Sea from the Yenisei estuary through the shallow shelf and further through the St. Anna trough, total microbial numbers (TMN) determined by direct counting, total activity of the microbial community determined by dark CO₂ assimilation (DCA), and the carbon isotopic composition of organic matter in suspension and upper sediment horizons (δ¹³C, ‰) were investigated. Three horizons were studied in detail: (1) the near-bottom water layer (20–30 cm above the sediment); (2) the uppermost, strongly hydrated sediment horizon, further termed fluffy layer (5–10 mm); and (3) the upper sediment horizon (1–5 cm). Due to a decrease in the amount of isotopically light carbon of terrigenous origin with increasing distance from the Yenisei estuary, the TMN and DCA values decreased, and the δ¹³C changed gradually from ?29.7 to ?23.9‰. At most stations, a noticeable decrease in TMN and DCA values with depth was observed in the water column, while the carbon isotopic composition of suspended organic matter did not change significantly. Considerable changes of all parameters were detected in the interface zone: TMN and DCA increased in the sediments compared to their values in near-bottom water, while the 13C content increased significantly, with δ¹³C of organic matter in the sediments being at some stations 3.5–4.0‰ higher than in the near-bottom water. Due to insufficient illumination in the near-bottom zone, newly formed isotopically heavy organic matter (δ¹³C ～ ?20‰) could not be formed by photosynthesis; active growth of chemoautotrophic microorganisms in this zone is suggested, which may use reduced sulfur, nitrogen, and carbon compounds diffusing from anaerobic sediments. High DCA values for the interface zone samples confirm this hypothesis. Moreover, neutrophilic sulfur-oxidizing bacteria were retrieved from the samples of this zone.     

Distribution and activity of microorganisms in the deep repository for liquid radioactive waste at the Siberian Chemical Combine

The physicochemical conditions, composition of microbial communities, and the rates of anaerobic processes in the deep sand horizons used as a repository for liquid radioactive wastes (LRW) at the Siberian Chemical Combine (Seversk, Tomsk oblast), were studied. Formation waters from the observation wells drilled into the horizons used for the radioactive waste disposal were found to be inhabited by microorganisms of different physiological groups, including aerobic organotrophs, anaerobic fermentative, denitrifying, sulfate-reducing, and methanogenic bacteria. The density of microbial population, as determined by cultural methods, was low and usually did not exceed 10⁴ cells/ml. Enrichment cultures of microorganisms producing gases (hydrogen, methane, carbon dioxide, and hydrogen sulfide) and capable of participation in the precipitation of metal sulfides were obtained from the waters of the disposal site. The contemporary processes of sulfate reduction and methanogenesis were assayed; the rates of these terminal processes of organic matter destruction were found to be low. The denitrifying bacteria from the deep repository were capable of reducing the nitrates contained in the wastes, provided sources of energy and biogenic elements were available. Biosorption of radionuclides by the biomass of aerobic bacteria isolated from groundwater was demonstrated. The results obtained give us insight into the functional structure of the microbial community inhabiting the waters of repository horizons. This study indicates that the numbers and activity of microbial cells are low both inside and outside the zone of radioactive waste dispersion, in spite of the long period of waste discharge.     

Allochthonous organic matter supplements and sediment transport in a polymictic reservoir determined using elemental and isotopic ratios

Because allochthonous organic matter (OM) loading supplements autochthonous OM in supporting lake and reservoir food webs, C and N elemental and isotopic ratios of sedimenting particulate OM were measured during an annual cycle in a polymictic, eutrophic reservoir. Particulate organic C and N deposition rates were greatest during winter and lowest during spring. C:N ratios decreased through our study indicating that OM largely originated from allochthonous sources in winter and autochthonous sources thereafter. δ¹³C were influenced by C₄ plant signatures and became increasingly light from winter through autumn. δ¹⁵N indirectly recorded the OM source shift through nitrate utilization degree with maximum values occurring in May as nitrate concentrations decreased. Unlike relationships from stratified systems, δ¹³C decreased with increasing algal biomass. This relationship suggests that minimal inorganic C fixation relative to supplies maintained photosynthetic isotopic discrimination during productive periods. Water column mixing likely maintained adequate inorganic C concentrations in the photic zone. Alternatively, OM isotopic composition may have been influenced by changing dissolved inorganic nutrient pools in this rapidly flushed system. δ¹⁵N also recorded increased N₂ fixation as nitrate concentrations declined through autumn. Secondary sediment transport mechanisms strongly influenced OM delivery. Particulate organic C and N deposition rates were 3× greater near the sediment-water interface. Isotopic ratio mixing models suggested that river plume sedimentation, sediment resuspension, and horizontal advection influenced excess sediment deposition with individual mechanisms being more important seasonally. Our findings suggest that allochthonous OM loading and secondarily-transported OM seasonally supplement phytoplankton production in productive reservoirs.     

土壤碳库构成研究进展

土壤碳库是陆地生态系统中最大的碳库。土壤碳库的构成影响其累积和分解,并直接影响全球陆地生态系统碳平衡,同时也影响土壤质量变化。弄清土壤碳库的组分及构成,是进一步研究土壤碳库变化机制的关键。综述了土壤碳库的组分和构成,对有机碳库进行不稳定性有机碳库和稳定有机碳库归类,描述各类碳库的性质,并对各类碳库的分析测定方法进行了评述。提出在土壤碳构成中增加黑碳和煤炭(碳)以完善土壤有机碳构成框架。在未来研究中,应加强土壤无机碳及湿地土壤和新开发新复垦的重构土壤碳库构成及变化,各类碳库化学构成,交叉重叠的定量关系,碳库之间的转化及在土壤中的迁移,黑碳对土壤碳库稳定性及土壤质量的影响,煤开采扰动区煤炭(碳)对土壤质量的影响及环境效应等科学问题的研究。     

Geochemical characteristics of the carbonate constructions formed during microbial oxidation of methane under anaerobic conditions

The aragonite constructions of the Black Sea are formed in a stable anaerobic zone and are a perfect object to study the natural mechanism of anaerobic methane oxidation. The most probable pathway of methane oxidation is its methanogen-mediated reaction with bicarbonates, dissolved in seawater, with the formation of water and acetate, which is then consumed by other components of the anaerobic community. Comparison of the delta 13C values of carbonate minerals and organic matter once more demonstrated that the formation of the organic matter of biomass is accompanied by intense fractionation of carbon isotopes, as a result of which the total organic matter of biomass acquires an extremely light isotopic composition, characterized by delta 13C values as low as -83.8@1000.     

Natural pipes in blanket peatlands: major point sources for the release of carbon to the aquatic system

Natural soil pipes, which have been widely reported in peatlands, have been shown to contribute significantly to total stream flow. Here, using measurements from eight pipe outlets, we consider the role of natural pipes in the transport of fluvial carbon within a 17.4‐ha blanket‐peat‐covered catchment. Concentrations of dissolved and particulate organic carbon (DOC and POC) from pipe waters varied greatly between pipes and over time, ranging between 5.3 and 180.6 mg L^?1 for DOC and 0.08 and 220 mg L^?1 for POC. Pipes were important pathways for peatland fluvial carbon export, with fluxes varying between 0.6 and 67.8 kg yr^?1 (DOC) and 0.1 and 14.4 kg yr^?1 (POC) for individual pipes. Pipe DOC flux was equivalent to 20% of the annual DOC flux from the stream outlet while the POC flux from pipes was equivalent to 56% of the annual stream POC flux. The proportion of different forms of aquatic carbon to total aquatic carbon flux varied between pipes, with DOC ranging between 80.0% and 91.2%, POC from 3.6% to 17.1%, dissolved CO₂‐C from 2.4% to 11.1% and dissolved CH₄‐C from 0.004% to 1.3%. The total flux of dissolved CO₂‐C and CH₄‐C scaled up to all pipe outlets in the study catchment was estimated to be 89.4 and 3.6 kg yr^?1 respectively. Overall, pipe outlets produced discharge equivalent to 14% of the discharge in the stream but delivered an amount of aquatic carbon equivalent to 22% of the aquatic carbon flux at the catchment outlet. Pipe densities in blanket peatlands are known to increase when peat is affected by drainage or drying. Hence, environmental change in many peatlands may lead to an increase in aquatic carbon fluxes from natural pipes, thereby influencing the peatland carbon balance and downstream ecological processes.     

Microbial biomass on particulate organic matter in seawater of the euphotic zone

Microbial biomass on suspended organic matter in seawater of the euphotic zone of Saanich Inlet was investigated. The viable microorganisms were measured by the glucose-uptake method. Microbial carbon on particulate organic matter in seawater was determined to be, on the average, 9.9 μg of C/liter, and there was a regression relationship as y = 0.0062 x − 1.79 with an unbiased variance V_yx^1/2 = 0.38, where x = particulate organic carbon in seawater (micrograms of C/liter) and y = logarithm of microbial carbon (micrograms of C/liter).     

Modeling the carbon cycle in Lake Matano

Lake Matano, Indonesia, is a stratified anoxic lake with iron‐rich waters that has been used as an analogue for the Archean and early Proterozoic oceans. Past studies of Lake Matano report large amounts of methane production, with as much as 80% of primary production degraded via methanogenesis. Low δ¹³C values of DIC in the lake are difficult to reconcile with this notion, as fractionation during methanogenesis produces isotopically heavy CO₂. To help reconcile these observations, we develop a box model of the carbon cycle in ferruginous Lake Matano, Indonesia, that satisfies the constraints of CH₄ and DIC isotopic profiles, sediment composition, and alkalinity. We estimate methane fluxes smaller than originally proposed, with about 9% of organic carbon export to the deep waters degraded via methanogenesis. In addition, despite the abundance of Fe within the waters, anoxic ferric iron respiration of organic matter degrades <3% of organic carbon export, leaving methanogenesis as the largest contributor to anaerobic organic matter remineralization, while indicating a relatively minor role for iron as an electron acceptor. As the majority of carbon exported is buried in the sediments, we suggest that the role of methane in the Archean and early Proterozoic oceans is less significant than presumed in other studies.     

The effect of herbivorous crustacean zooplankton on epilimnetic carbon and phosphorus cycling

Plastic limnocorrals (LCs; volume 70 m³) in oligo-mesotrophic Lake Lucerne, Switzerland were used to manipulate planktonic communities by (1) removing large zooplankton at the start of the experiment, and (2) adding phosphate during experiments of two weeks duration.Primary production (¹⁴C-assimilation), chlorophyll, standing crops and sedimentation of particulate organic carbon (POC) and of particulate phosphorus, as well as plankton composition were assessed simultaneously in two to four differently treated LCs. Carbon and phosphorus mass balances were calculated from assimilation, temporal change in standing crop of particulate matter, and sedimentation.A quick elimination of crustaceans by screening hardly increased primary production, but decreased sedimentation and mineralisation of particulate organic carbon, and thus significantly enhanced the standing crop of POC, but decreased POC turnover. The exclusion of crustaceans increased the mean residence time of total phosphorus by a reduced P loss by sedimentation.Increased grazing pressure during the experiment showed little grazing induced effect on plankton composition and primary production except at the very end.We conclude that in an oligo-mesotrophic lake, buffering mechanisms attenuate the impact of changing grazing pressures on primary production.     

Origin, biochemical composition and vertical flux of particulate organic matter under the pack ice in Terra Nova Bay (Ross Sea, Antarctica) during late summer 1995

Water samples and particulate materials settling under the pack ice were collected in an ice-covered area near the Terra Nova Bay Italian Station during late summer 1995, in order to study short-term changes in the biochemical composition of particulate organic matter. At the end of the study period the phytoplankton biomass increase (up to >3.0 μg chlorophyll-a l⁻¹) was probably related to the intrusion under the pack ice of chlorophylls-enriched surface waters coming from the near ice-free area. Such increase was associated also with a notable increase in particulate organic matter concentrations, as well as in particulate organic matter vertical fluxes (up to >100 mg C m⁻² day⁻¹). Proteins were the most abundant biochemical class of particulate organic matter (on average about 49%), followed by lipids (29%) and carbohydrates (22%). By contrast, organic matter collected in the sediment trap was characterized by the dominance of lipids (about 55% of the total biopolymeric carbon flux) over carbohydrates (28%) and proteins (17%). The hydrolizable particulate biopolymeric carbon accounted for about 23% of total biopolymeric carbon. This value was about one-half of that found in ice-free waters, suggesting that the suspended particulate organic material under the pack ice was less digestible than in ice-free waters or was already partially digested. Despite this, and the decay of labile organic compounds in the sediment trap during the deployment, material settling towards the sea bottom under the pack ice in Terra Nova Bay, owing to its high lipid content, might represent an important high-quality food source for benthic consumers. Finally, assuming as possible the intrusion under sea ice of primary organic matter-enriched waters, we hypothesize the occurrence of a “fertilization” effect deriving from ice-melting areas towards under-ice waters, supplying the latter with an additional rate of primary organic matter. Accepted: 18 February 1999