Is nitrate reduced to ammonium in waterlogged acid sulfate soil?

Summary A study of transformations of added nitrate nitrogen in an acid sulfate soil under waterlogged conditions indicated that chemical reduction of NO₃–N to NH₄–N is effected by high concentrations of ferrous iron, released in the soil following flooding and reduction of ferric to ferrous iron.     

The effects of flooding for rice culture on soil chemical properties and subsequent maize growth

Summary The effects of flooding and lowland rice culture on soil chemical properties and subsequent maize growth were investigated in two contrasting rice soils of S.E. Australia. The effects of incorporating rice straw, either during or after flooding were also studied. The experiment was conducted in a glasshouse with the use of large intact soil cores.Previous flooding markedly reduced maize growth, leaf P concentration and P uptake, despite the application of a large quantity of P fertilizer after drainage. Soil analyses showed that previous flooding increased the Langmuir sorption terms for maximum P sorption and bonding energy. The availability of P was more closely related to the bonding energy between soil and P than to the capacity of the soils to sorb P. The increases, in the P sorption parameters, were associated with decreases in the crystallinity of the free iron oxides as determined by their oxalate solubility. It was concluded that depressed P supply to maize sown in previously flooded soils was due to stronger P sorption by the drained soils, rather than to P immobilization during flooding.Rice plants grown during flooding reduced the amount of N available to the subsequent maize crop, but did not significantly affect P availability. Rice straw added during flooding did not affect subsequent maize growth, but when added after flooding caused microbial immobilization of N.Salts, Fe or Mn from previous flooding did not affect maize growth.     

Extracellular iron reductase activity produced by Listeria monocytogenes

Little is known about how pathogenic microorganisms that do not produce low-molecular-weight iron-chelating agents, termed siderophores, acquire iron from their environment. We have identified an extracellular enzyme produced by Listeria monocytogenes that can mobilize iron from a variety of iron-chelate complexes via reduction of the metal. The iron reductase requires Mg²⁺, flavin mononucleotide (FMN), and reduced nicotinamide adenine dinucleotide (NADH) for activity. Saturation kinetics were found when initial velocity studies of iron reduction were carried out as a function of variable FMN concentrations in the presence of 100 μM NADH and 10 mM Mg²⁺. Hyperbolic kinetics were also found when these studies were repeated as a function of variable NADH concentrations along with 20 μM FMN and 10 mM Mg²⁺. This process of extracellular reduction, in all likelihood, could be involved in the mobilization of iron from soils and aqueous environments and from host tissues in pathogenic processes. This is the first report of the extracellular enzymic reduction of iron by microorganisms. Received: 12 March 1996 / Accepted: 16 April 1996     

水稻土中铁氧化物对产甲烷古菌群落结构的影响

产甲烷菌广泛分布在淹水水稻土等各种厌氧环境中,在全球气候变化、碳循环和能源等领域都发挥着重要的作用。研究发现,厌氧条件下,水稻土中铁氧化物的生物还原会抑制产甲烷菌的甲烷合成作用。然而,目前关于铁氧化物对产甲烷菌群落结构的影响报道较少。通过泥浆厌氧培养实验,向采集的水稻土中添加甲酸盐作为甲烷合成的底物(Control,CK处理),并设置添加水铁矿作为体系中唯一电子受体的处理组(Ferrihydrite,Fh处理)。培养结束后,与CK相比,添加水铁矿显著降低了古菌在总微生物群落中的占比,但对古菌群落的物种多样性和均一度没有显著影响;且两组处理中优势种均为操作分类单元(Operational taxonomic unit,OTU)2056和OTU 911(76%—80%)。这说明碳源相同时,产甲烷菌的群落结构不受铁氧化物的影响。本研究为探索土壤中微生物铁还原与碳循环耦合的分子机制奠定基础。     

Prediction of reducible soil iron content from iron extraction data

Soils contain various iron compounds that differ in solubility, reducibility and extractability. Moreover, the contribution of the various iron compounds to total iron (Fe) and total Fe concentrations differs highly among soils. As a result, the total reducible Fe content can also differ among soils, and so does the dynamics of iron reduction. These factors complicate the prediction of reducible Fe based on Fe extraction data and hamper the application of process-based models for reduced or waterlogged soils where redox processes play a key-role. This paper presents a theoretical analysis relating reducible to extractable Fe reported in the literature. Predictions made from this theoretical analysis were evaluated in soil incubations using 18 rice paddy soils from all over the world. The incubation studies and the literature study both show that reducible Fe can be related to Fe from some selected, but not all, iron extractions. The combination of measurements for labile Fe(III)oxides (derived from oxalate-extractable Fe) and stabile Fe(III)oxides (derived from dithionite-citrate-extractable Fe) shows highly significant correlations with reducible Fe with high coefficients of determination (r² = 0.92–0.95 depending on the definition of stabile Fe(III)oxides). Given the high diversity in rice soils used for the incubations, these regression equations will have general applicability. Application of these regression equations in combination with soil database information may improve the predictive ability of process-based models where soil redox processes are important, such as CH₄ emission models derived for rice paddies or wetlands.     

Concentration of iron and manganese in rice plants as influenced by hexachlorocyclohexane applied to soil

Summary Application of a granular formulation of hexachlorocyclohexane (HCH) to the potted soil at flooding decreased the concentration of iron and. to some extent, manganese in rice plants, especially at concentrations above 3 ppm active ingredient (a.i.) Likewise, HCH, applied to rice fields at transplanting (several days after submergence) caused a significant decrease in the concentration of iron, and not manganese, in the rice plant but only at concentrations above 12.5 kg a.i./ha despite high levels of reduced iron in the soil. Inhibition of iron reduction by HCH was more pronounced when applied at flooding than at several days after flooding.     

Kinetics of Cr(VI) Removal by Iron Filings in Some Soils

In this research, kinetics of Cr(VI) reduction by iron filings was investigated through a batch study in seven different soils. Chromate reduction experiments were carried out for initial Cr(VI) concentrations ranging from 20 to 100 mgkg^?1 and iron filings dosage of 0 to 5% w/w. The experimental data were analyzed using various kinetic models including zero-order, pseudo first-order, power function, Elovich, and diffusion parabolic. Results showed that the Cr(VI) reduction efficiency in the presence of all studied soils increased with increasing iron filings dosage and decreased with increasing the initial Cr(VI) concentration. The reaction rates considerably depended on pH and were higher in acidic soils. The diffusion parabolic model was the best kinetic model as evidenced by the highest determination coefficient (r²) and the lowest standard error of the estimate (SE). The rate-limiting step(s) may be transport of chromate anions across a liquid film at the interface of soil-liquid, transport in liquid-filled macropores of iron filings aggregates, or diffusion in micropores and along the particle's surface.     

Iron toxicity to rice in an acid sulfate soil as influenced by water regimes

Summary The effects of two water regimes: Continuous flooding and flooding with soil drying on iron toxicity to rice in an acid sulfate soil was studied by continuously growing 7 crops of IR-32 rice in pots under the two water treatments. There was no plant growth upto the second crop under both water treatments due to iron toxicity. But there was good growth of rice under the continuous water regime from third cropping onwards, however, there was no growth of rice in the flooding with soil drying treatment even upto the seventh crop due to iron toxicity.The results of the study bring out that keeping an acid sulfate soil flooded for a few weeks and then planting rice when iron in soil solution has dropped below toxicity level may be a possible management practice for lowland rice culture on such soils. Drying and reflooding an acid sulfate soil on the other hand aggravates soil acidity and keeps iron in solution in high amounts to be toxic to rice plant.     

碳源和淹水时间对水稻土微生物Fe(Ⅲ)还原能力的影响

以我国6个省的水稻土为供试样品,采用厌氧恒温培养方法,研究了分别以葡萄糖、丙酮酸盐、乳酸盐和乙酸盐为惟一碳源时不同淹水时间土壤微生物群落对Fe(Ⅲ)的还原能力.结果表明：不同淹水时间对Fe(Ⅲ)还原特征值V_max的影响显著,表现为淹水20 d > 30 d > 12 d > 1 d > 5 d,不同淹水时间下水稻土微生物群落结构不同是导致Fe(Ⅲ)还原能力不同的主要原因.不同碳源对微生物铁还原过程有显著影响,葡萄糖和丙酮酸盐在不同淹水时间中始终为优势碳源,其Fe(Ⅲ)还原率分别为88.1%～99.9%和58.0%～97.9%;不同土壤铁还原微生物群落对乳酸盐的利用差距较大,湖南和浙江水稻土在整个淹水周期中Fe(Ⅲ)还原率达到87.1%～100%,而其他土壤则表现为淹水前5 d为5.0%～49.4%,12 d后增加到52.2%～99.9%;乙酸盐处理在不同淹水时间中都表现为随时间推移Fe(Ⅲ)还原率逐渐增大的趋势,其中浙江水稻土的变化最大,在5.3%～75.8%.     

Transformation of iron and manganese in rice soils under different moisture regimes and organic matter applications

Summary Transformation of iron and manganese under three different moisture regimes,viz continuous waterlogged (W₁), continuous saturated (W₂) and alternate waterlogged and saturated (W₃) and three levels of organic matterviz 0, 0.5 and 1.0% in all possible combinations was studied in four soils. The results showed that under waterlogged moisture regime there was a sharp increase in the content of water soluble plus exchangeable manganese accompanied by significant decrease in the content of reducible manganese in all the soils excepting the acidic soil which was very poor in active manganese content. The increase in respect of iron in similar form was, however, very small. The increase in the content of water soluble plus exchangeable manganese as well as iron under the continuous saturated and alternate waterlogged and saturated moisture regimes was always much lower as compared to that under the continuous waterlogged condition. Application of organic matter brought about an increase in the content of water soluble plus exchangeable manganese in all the soils excepting the lateritic one irrespective of moisture regimes but did not cause any change in the content of iron and manganese in insoluble complex. The content of water soluble plus exchangeable iron and of insoluble ferrous iron although recorded some increase due to organic matter application, the increase was not so marked in any of the soils.     

Effect of salinity,alkalinity and iron sources on availability of iron

The availability of iron from added iron sources was studied in normal and salt affected soils in the laboratory. All forms of iron decreased with increase in salinity and alkalinity, the lowest amount being recorded in 8 E.Ce+40 ESP soil. All the forms of iron in all the soils decreased gradually with increase in incubation period. Addition of iron in organic and inorganic forms increased all the forms of iron in all the soils. In general, iron Ke-Min and Rayplex were better in keeping higher iron availability for longer time.     

Ferrous iron dependent nitric oxide production in nitrate reducing cultures of Escherichia coli

l-Lactate-driven ferric and nitrate reduction was studied in Escherichia coli E4. Ferric iron reduction activity in E. coli E4 was found to be constitutive. Contrary to nitrate, ferric iron could not be used as electron acceptor for growth. Ferric iron reductase activity of 9 nmol Fe²⁺ mg^-1 protein min^-1 could not be inhibited by inhibitors for the respiratory chain, like Rotenone, quinacrine, Actinomycin A, or potassium cyanide. Active cells and l-lactate-driven nitrate respiration in E. coli E4 leading to the production of nitrite, was reduced to about 20% of its maximum activity with 5 mM ferric iron, or to about 50% in presence of 5 mM ferrous iron. The inhibition was caused by nitric oxide formed by a purely chemical reduction of nitrite by ferrous iron. Nitric oxide was further chemically reduced by ferrous iron to nitrous oxide. With electron paramagnetic resonance spectroscopy, the presence of a free [Fe²⁺-NO] complex was shown. In presence of ferrous or ferric iron and l-lactate, nitrate was anaerobically converted to nitric oxide and nitrous oxide by the combined action of E. coli E4 and chemical reduction reactions (chemodenitrification).     

淹水时间对水稻土中地杆菌科群落结构及丰度的影响

【目的】通过模拟水稻土淹水过程,探讨地杆菌科(Geobacteraceae)群落结构和相对丰度随淹水时间的动态变化特征,揭示其群落结构和相对丰度变化与微生物Fe(Ⅲ)还原的内在联系。【方法】提取水稻土淹水培养1 h、1 d、5 d、10 d、20 d和30 d后的微生物总DNA,构建地杆菌科16S rDNA克隆文库,采用PCR-RFLP方法分析地杆菌科的群落结构和多样性变化特征,通过Real-time PCR技术测定地杆菌科相对丰度的动态变化。采用厌氧泥浆培养方法,测定水稻土中Fe(Ⅱ)产生量变化。【结果】供试水稻土中,微生物Fe(Ⅲ)还原过程在淹水培养初期变化明显,培养20 d后达到稳定期,最大铁还原潜势为10.16 mg/g,最大反应速率为1.064 mg/(g.d),最大反应速率对应的时间为4.84 d。α多样性指数显示,水稻土中地杆菌科的多样性随淹水时间延长呈现波动性变化,淹水5 d和20 d处理出现2个峰值,而淹水10 d和30 d处理的多样性明显减小。β多样性指数表明淹水过程中群落结构存在明显差异。不同淹水时间共产生了10种地杆菌科优势类型,分别属于Clade 1和Clade 2。Real-time PCR结果表明,地杆菌科与总细菌16S rDNA丰度的比值在淹水培养1 d时最小(1.20%),而20 d时达到最大值(4.54%)。【结论】淹水培养的水稻土中,地杆菌科微生物的多样性和相对丰度的动态变化与微生物Fe(Ⅲ)还原过程密切相关。     

Initial-phase optimization for bioremediation of munition compound-contaminated soils.

We examined the bioremediation of soils contaminated with the munition compounds 2,4,6-trinitrotoluene (TNT), hexahydro-1,3,5-trinitro-1,3,5-triazine, and octahydro-1,3,5,7-tetranitro-1,3,5,7-tetraazocine by a procedure that produced anaerobic conditions in the soils and promoted the biodegradation of nitroaromatic contaminants. This procedure consisted of flooding the soils with 50 mM phosphate buffer, adding starch as a supplemental carbon substrate, and incubating under static conditions. Aerobic heterotrophs, present naturally in the soil or added as an inoculum, quickly removed the oxygen from the static cultures, creating anaerobic conditions. Removal of parent TNT molecules from the soil cultures by the strictly anaerobic microflora occurred within 4 days. The reduced intermediates formed from TNT and hexahydro-1,3,5-trinitro-1,3,5-triazine were removed from the cultures within 24 days, completing the first stage of remediation. The procedure was effective over a range of incubation temperatures, 20 to 37 degrees C, and was improved when 25 mM ammonium was added to cultures buffered with 50 mM potassium phosphate. Ammonium phosphate buffer (50 mM), however, completely inhibited TNT reduction. The optimal pH for the first stage of remediation was between 6.5 and 7.0. When soils were incubated under aerobic conditions or under anaerobic conditions at alkaline pHs, the TNT biodegradation intermediates polymerized. Polymerization was not observed at neutral to slightly acidic pHs under anaerobic conditions. Completion of the first stage of remediation of munition compound-contaminated soils resulted in aqueous supernatants that contained no munition residues or aminoaromatic compounds.     

THE EFFECT OF IRON NUTRITION ON PHOTOSYNTHESIS AND NITROGEN FIXATION IN CULTURES OF TRICHODESMIUM (CYANOPHYCEAE)1

Cultures of Trichodesmium NIBB 1067 were grown in the synthetic medium AQUIL with a range of iron added from none to 5 × 10^?7 M Fe for 15 days. Chlorophyll-a, cell counts, and total cell volume were two or three times higher in medium with 10^?7 M Fe than with no added Fe. Oxygen production rate per chlorophyll-a was over 60% higher with higher iron. Increased iron stimulated photosynthesis at all irradiances from about 12–250 μE · m^?2· s^?1. Nitrogen fixation rate, estimated from acetylene reduction, for 10^?7 and 10^?8 M Fe cultures was approximately twice that of the cultures with no added Fe. The range of rates of O₂ production and N₂ fixation in cultures at the iron concentrations we used were similar to the rates from natural samples of Trichodesmium from both the Atlantic, and the Pacific oceans. This similarity may allow this clone to be used, with some caution, for future physiological ecology studies. This study demonstrates the importance of iron to photosynthesis and nitrogen fixation and suggests that Trichodesmium plays a central role in the biogeochemical cycles of iron, carbon and nitrogen.     

The effect of chromium on parameters related to iron metabolism

The effect of chromium on some parameters related to iron metabolism was investigated. Preliminary experiments showed that this metal ion was taken up by serum proteins and was dependent on the amount of chromium present in the medium. It was also shown that the uptake of iron was reduced significantly in the presence of chromium. In vivo study showed that the serum levels of iron and total iron binding capacity (TIBC) were reduced by 28 and 11%, respectively, following daily administration of chromium (1 mg/kg) for 45 d. Serum ferritin was reduced by 22% under this condition. Hematocrit and hemoglobin levels were also affected in chromium-treated animals and were both reduced by 17%. Spectrophotometric titration of each individual amino acid located in the iron binding site of transferrin revealed that tyrosin might be the most suitable ligand for the binding of chromium to transferrin. These results suggest that chromium may compete with iron in binding to apo-transferrin, and influence iron metabolism and its related biochemical parameters.     

Efficient Reduction of Iron Oxides by Paenibacillus spp. Strains Isolated from Tropical Soils

The genus Paenibacillus was hardly described as a Fe(III)-reducing agent, only limited to reduce soluble forms or Fe inserted in poorly crystallized structures. In this study, three Paenibacillus strains capable of reducing manganese oxides in addition to iron oxides were isolated from Cameroonian and Brazilian soils. These strains reduced iron minerals from poorly crystallized 2-line ferrihydrite to well-crystallized Al-substituted and pure goethite with a significant production of soluble ferrous iron. These Paenibacillus strains, inhabitants from ferralitic temporarily waterlogged soils, could play an important role in the bioweathering of minerals and metal mobility in soils.     

A mechanism of abiotic immobilization of nitrate in forest ecosystems: the ferrous wheel hypothesis

Forest soils, rather than woody biomass, are the dominant long‐term sink for N in forest fertilization studies and, by inference, for N from atmospheric deposition. Recent evidence of significant abiotic immobilization of inorganic‐N in forest humus layers challenges a previously widely held view that microbial processes are the dominant pathways for N immobilization in soil. Understanding the plant, microbial, and abiotic mechanisms of N immobilization in forest soils has important implications for understanding current and future carbon budgets. Abiotic immobilization of nitrate is particularly perplexing because the thermodynamics of nitrate reduction in soils are not generally favorable under oxic conditions. Here we present preliminary evidence for a testable hypothesis that explains abiotic immobilization of nitrate in forest soils. Because iron (and perhaps manganese) plays a key role as a catalyst, with Fe(II) reducing nitrate and reduced forms of carbon then regenerating Fe(II), we call this ‘the ferrous wheel hypothesis’. After nitrate is reduced to nitrite, we hypothesize that nitrite reacts with dissolved organic matter through nitration and nitrosation of aromatic ring structures, thus producing dissolved organic nitrogen (DON). In addition to ignorance about mechanisms of DON production, little is known about DON dynamics in soil and its fate within ecosystems. Evidence from leaching and watershed studies suggests that DON production and consumption may be largely uncoupled from seasonal biological processes, although biological processes ultimately produce the DOC and reducing power that affect DON formation and the entire N cycle. The ferrous wheel hypothesis includes both biological and abiological processes, but the reducing power of plant‐derived organic matter may build up over seasons and years while the abiotic reduction of nitrate and reaction of organic matter with nitrite may occur in a matter of seconds after nitrate enters the soil solution.     

Studies on the manganese uptake of lettuce on steam-sterilised glasshouse soils

Summary During steam sterilisation of glasshouse soils appreciable amounts of easily reducible manganese are converted into exchangeable manganese. The reverse process takes place much more gradually. As a result, manganese toxicity occurs in several crops on newly steamed soils. In the Netherlands, lettuce has been found to be particularly prone to manganese toxicity. An investigation was carried out to obtain more information about the manganese status of steamed glasshouse soils in which lettuce was used as the test crop. The following results were noted.The uptake of exchangeable manganese is easier in the lighter soils than in heavy soils. Application of iron to the soil inhibits manganese uptake by the plant, but the iron must be applied in the form of chelate. The pH has a profound effect on manganese uptake on steamed as well as on unsteamed soils. However, the relationship between the pH and the manganese content of the crop on steamed soils is different from that found on unsteamed soils.The slow rate of oxidation of manganese in steamed glasshouse soil may be explained by the fact that the oxidising bacteria are killed during the steam sterilisation process. The fixation of manganese can be accelerated appreciably by inoculating the steamed soil with manganese-oxidising bacteria.The effect on manganese uptake of five soil desinfection chemicals used in the investigation proved to be very small.The lettuce varieties used in the Netherlands show a wide variation in susceptibility to manganese toxicity. This cannot be explained by different rates of manganese uptake. It is more likely that the varietal differences are based on different levels of resistance to manganese present in the plants.     

Iron reductase systems on the plant plasma membrane—A review

Higher plant roots, leaf mesophyll tissue, protoplasts as well as green algae are able to reduce extra-cellular ferricyanide and ferric chelates. In roots of dicotyledonous and nongraminaceous, monocotyledonous plants, the rate of ferric reduction is increased by iron deficiency. This reduction is an obligatory prerequisite for iron uptake and is mediated by redox systems localized on the plasma membrane. Plasma membrane-bound iron reductase systems catalyze the transmembrane electron transport from cytosolic reduced pyridine nucleotides to extracellular iron compounds. Natural and synthetic ferric complexes can act as electron acceptors.This paper gives an overview about the present knowledge on iron reductase systems at the plant plasma membrane with special emphasis on biochemical characteristics and localisation.