Human land use, agriculture, pesticides and losses of imperiled species

Aim  Anthropogenic habitat loss is usually cited as the most important cause of recent species' extinctions. We ask whether species losses are in fact more closely related to habitat loss than to any other aspect of human activity such as use of agricultural pesticides, or human population density (which reflects urbanization).
Location  Canada.
Methods  We statistically compared areas in Canada where imperiled species currently occur, versus areas where they have been lost. Using multiple regressions, we relate the numbers of species that had suffered range reductions in an ecoregion to variables that represent present habitat loss, pesticide use and human population density.
Results  We find high losses of imperiled species in regions with high proportions of agricultural land cover. However, losses of imperiled species are significantly more strongly related to the proportion of the region treated with agricultural pesticides. The relationship between species losses and area treated with pesticides remains significant after controlling for area in agriculture.
Main conclusions  Our results are consistent with the hypothesis that agricultural pesticide use, or something strongly collinear with it (perhaps intensive agriculture more generally), has contributed significantly to the decline of imperiled species in Canada. Habitat conversion per se may be a less important cause of species declines than how that converted habitat is used.     

Influence of settlement time, human population, park shape and age, visitation and roads on the number of alien plant species in protected areas in the USA

Abstract. I examined a data set of 77 protected areas in the USA (including national and state parks) to determine which of the following variables most strongly influence alien plant species richness: park area, climate (temperature and precipitation), native species richness, visitation rate, local human population size, total road length, park shape and duration of European settlement. Many of these predictor variables are intercorrelated, so I used multiple regression to help separate their effects. In support of previous studies, native species richness was the best single predictor of alien species richness, probably because it was a good estimator of both park area and habitat diversity available for establishment of alien species. Other significant predictors of alien species richness were years of occupation of the area by European settlers and the human population size of adjacent counties. Climate, visitation rate, road length and park shape did not influence alien species richness. The proportion of alien species (alien richness/native richness) is inversely related to park area, in agreement with a previous study. By identifying which variables are most important in determining alien species richness, such findings suggest ways to reduce alien species establishment.     

指示种、伞护种与旗舰种:有关概念及其在保护生物学中的应用

指示种、伞护种和旗舰种等的运用常常可以作为解决保护生物学问题的捷径。指示种被用来评价环境中人为干扰因素的程度,监测其他物种的种群动态,或用于确定生物多样性较高的区域;伞护种则常用来确定需保护生境的类型和面积;而旗舰种被用于引起公众对保护行为的关注。本文试图对上述术语和概念在使用上加以明确区分,并对其应用提出一些指导性原则。认为针对上述不同类型的代理种,使用的目的和选择的标准应有所不同,彼此不能混淆使用。     

Land use history, hurricane disturbance, and the fate of introduced species in a subtropical wet forest in Puerto Rico

Tropical forests are suffering from increasing intensities and frequency of disturbances. As a result, non-native species accidentally introduced or intentionally planted for farming, plantations, and ornamental purposes may spread and potentially invade undisturbed native forest. It is not known if these introduced species will become invasive, as a result of recurrent natural disturbances such as hurricanes. Using data from three censuses (spanning 15 years) of a 16-ha subtropical wet forest plot, we investigated the impact of two hurricanes on populations of plant species that were planted in farms and plantations that were then abandoned and from the natural spread of species introduced into Puerto Rico in the past. The populations of four species (Citrus paradis, Mangifera indica, Musa sp., and Simarouba glauca) changed little over time. Six species (Artocarpus altilis, Calophyllum calaba, Genipa americana, Hibiscus pernambucensis, Syzygium jambos, and Swietenia macrophylla) declined between the first two censuses after Hurricane Hugo, then increased again in Census 3 after Hurricane Georges. Spathodea campanulata gradually increased from census to census, while Coffea arabica declined. These introduced species represent only a small part of the forest basal area and few show signs of increasing over time. The number of stems per plant, new recruits, and the growth rates of these introduced species were within the ranges of those for native plant species. The mortality rates over both census intervals were significantly lower for introduced species (<5% year⁻¹) than for native ones (15% year⁻¹). Many new recruits established after Hurricane Hugo (prior to this study) had opened the forest canopy and these high mortality rates reflect their death as the canopy recovered. Only Swietenia macrophylla and Syzygium jambos showed an increase in stem numbers in the closed canopy area of forest that had suffered limited human disturbance in the past. A future increase in frequency of disturbance may enable greater stem numbers of introduced species to establish, while lower-mortality rates compared to native species, may allow them to persist during inter-hurricane intervals. An increase in the population of introduced species, especially for those that grow into large trees, may have an impact on this tropical forest in the future.     

Endemism, diversity, and the threat of tropical moist forest extinctions

Extinction rates have risen to perhaps 10⁴ the background rate. Much of this increase is due to projected influences of habitat loss on regions of the world with tropical moist forest. This ecosystem, home to a disproportionate amount of global biodiversity and a major regulator of regional and global climate, also faces disproportionately severe threats. In this study, we collect diversity and endemism data for tropical forested countries of the world, along with areal and socioeconomic data. While a correlation between overall numbers of species and endemic species per country is expected, we demonstrate that endemism patterns among birds and mammals remain very strongly convergent even after statistically rendering all countries equal in size and overall species richness and after adjusting for spatial autocorrelation. On a per country basis, mammals are generally more threatened than birds in these tropical moist forested countries. Human population growth rates and rising debt among these nations should be viewed as priorities for amelioration by the developed countries. Reserve network extent is not related to numbers of endemic mammals or birds at this large spatial scale.     

Training in zoo biology,captive breeding,and conservation

Different types of training in zoo biology, captive breeding, and conservation are discussed and the availability of a variety of programs documented. Emphasis is given to the need for more training in general, and especially for less-developed countries where zoos have much potential yet to be realized. The aims, structure, content, and impact of the Jersey Wildlife Preservation Trust's International Training Program are examined.     

Structure of two macrolepidopteran assemblages on Salix nigra (Marsh) and Acer negundo L.: abundance,diversity, richness,and persistence of scarce species

1. Most insect species occur at low abundance but a greater research effort has been devoted to so‐called outbreak species and little research is available on scarce (low abundance) species that are typical of most insect species. 2. Larval free‐feeding macrolepidoptera of two riparian trees Salix nigra (Marsh) (black willow) and Acer negundo L. (box elder) were sampled and sorted by species and abundance. 3. Data collected established that the majority of species in the assemblages in each tree species occurred at low abundance in each of the 5 years when larvae were sampled. 4. Species in the Noctuidae and Geometridae dominated both assemblages. 5. On both trees, assemblages were dominated numerically by relatively few species, a pattern that has been observed for insect assemblages on plants in managed and unmanaged habitats.     

Widespread Indo-Pacific Shore-fish Species: A Challenge for Taxonomists, Biogeographers, Ecologists, and Fishery and Conservation Managers

Many shore-fish species are currently considered to have wide distributions; for example, perhaps as many as half of all Indo-Pacific reef-fish species have distributions that span or even extend beyond the Indo-West Pacific. However, wide distributions of some and perhaps many species may be an artefact, reflecting taxonomic practice and understanding. The reappraisal of widespread species represents a daunting task for taxonomists, particularly given the current trend of ever-reducing support for systematic ichthyology. Our poor understanding of widespread shore-fish species has serious implications for cladistic biogeographers, ecologists, fishery and conservation managers.     

黑、吉、辽、蒙归化植物分布格局及其影响因素

为了解黑、吉、辽、蒙归化植物分布格局及其驱动因素,本研究基于实地调查和资料收集,对黑、吉、辽、蒙4省(区)48个地级市(盟)归化植物物种组成及时空分布进行了分析。结果表明:当前四省(区)共有归化植物70科239属370种,菊科、禾本科和豆科最多,约七成为人为有意引入,欧洲是最大原产地。不同地级城市归化植物多样性差异较大,整体呈东高西低趋势,省内存在"强省会"现象。沈阳、哈尔滨、呼和浩特等省会城市及大连等沿海发达城市归化植物分布较多。通辽市、松原市和鄂尔多斯市等平原或草原地区分布较少。GDP、土地利用程度和年均气温是造成该分布格局的主要因素。Logistic拟合显示,目前黑、吉、辽、蒙归化植物种数已趋于稳定,但随着"东北振兴",四省(区)经济必将出现新局面,归化植物累积速度很可能加快,相关部门仍需保持警惕。     

Age, Growth, and Gonadal Characteristics of Adult Bighead Carp, Hypophthalmichthys nobilis, in the Lower Missouri River

Bighead carp were introduced into Arkansas in 1973 to improve water clarity in production ponds. Bighead carp subsequently escaped aquaculture facilities in the early 1980's and dispersed into the Mississippi and Missouri rivers. The first documentation of bighead carp reproduction in the Mississippi River system was in 1989. The population has increased in the Missouri River as is evident in their increased proportion in the commercial harvest since 1990. The effect of this exotic planktivore on native ecosystems of the U.S. has not been examined. Basic biological data on bighead carp Hypophthalmichthys nobilis in the Missouri River are needed to predict potential ecological problems and provide a foundation for manipulative studies. The objectives of this study were to assess age, growth, and gonadal characteristics of bighead carp in the Missouri River. Adult bighead carp in our sample varied from age 3 to age 7 and length varied from 475 to 1050mm. There was a large variation in length at age, and overall bighead carp exhibited fast growth. For example, mean back-calculated length at age 3 was 556mm. The sample was dominated by bighead carp from the 1994 year class. There was no difference in gonad development (i.e., gonadal somatic index, egg diameter) between winter and spring samples. Length of male bighead carp and GSI were not significantly correlated; however, females exhibited a positive linear relationship between length and GSI. In each ovary, egg diameter frequencies exhibited a bimodal distribution, indicating protracted spawning. Mean fecundity was 226213, with a maximum fecundity of 769964. Bighead carp in the Missouri River have similar life history characteristics to Asian and European populations. They have become well established in the Missouri River and it is likely that dispersal and population density will increase.     

Recent advances and future prospects in peptaibiotics, hydrophobin, and mycotoxin research, and their importance for chemotaxonomy of Trichoderma and Hypocrea

Fungi of the genus Trichoderma with teleomorphs in Hypocrea are abundant producers of a group of amphiphilic, non-ribosomal peptide antibiotics, which are rich in the non-proteinogenic amino acid Aib (alpha-aminoisobutyric acid). They are referred to as peptaibiotics, or peptaibols, if a 1,2-amino alcohol is present at the C-terminus. Trichoderma/Hypocrea, like other ascomycetous fungi, also produce hydrophobins, a class of small, cysteine-rich proteins. Advanced soft ionization mass spectrometric techniques such as LC-CID-MS, LC-ESI-MS(n), and IC-MALDI-TOF-MS enabled the high-throughput analysis, simultaneous detection and sequence determination of peptaibiotics and hydrophobins from minute quantities of fungal materials. Some Trichoderma species have been recognized to produce peptaibiotics as well as simple mycotoxins of the trichothecene group. The combination of sequence data of both groups of peptides with the pattern of low-molecular-weight secondary metabolites, including trichothecene-type mycotoxins, independently confirmed the results of morphological, molecular, and phylogenetic analyses. This approach established a new lineage in Trichoderma/Hypocrea, the Brevicompactum clade, comprising four new and one redescribed species. Notably, commercial preparations of single or mixed cultures of Trichoderma species, in particular T. harzianum, and T. koningii, are registered as biocontrol agents for soil and plant pathogens. In this context, it is emphasized that the four mycotoxin-producing species of the recently established Brevicompactum clade (T. brevicompactum, T. arundinaceum, T. turrialbense, and T. protrudens) are not closely related to any of the Trichoderma species currently used as biocontrol agents. Furthermore, possible health concerns about release of peptaibiotics in the biosphere are discussed with respect to their bioactivities and their use as drugs in human and veterinary medicine. Finally, future prospects regarding novel bioactivities and further research needs, including interdisciplinary taxonomic approaches, are outlined.     

Species diversity of freshwater shrimp in Henan Province,China, based on morphological characters and COI mitochondrial gene

Freshwater shrimp are a rich species group, with a long and problematic taxonomic history attributed to their wide distribution and similar morphological characteristics. Shrimp diversity and species identification are important cornerstones for fisheries management. However, identification based on morphological characteristics is a difficult task for a nonspecialist. Abundant freshwater shrimp species are distributed in the waters of Henan Province, but investigations of freshwater shrimp are limited in this region, especially concerning molecular features. Here, we combined morphology and DNA barcodes to reveal the species diversity of freshwater shrimp in Henan province. A total of 1,200 freshwater shrimp samples were collected from 46 sampling sites, and 222 samples were chosen for further microscopic examination and molecular delimitation. We used tree‐based methods (NJ, ML, and bPTP) and distance‐based methods (estimation of the paired genetic distances and ABGD) to delimit species. The results showed that there were nine morphospecies based on morphological characteristics; all could effectively be defined by molecular methods, among which bPTP and ABGD defined 13 and 8 MOTUs, respectively. The estimation of the paired genetic distances of K2P and the p‐distances had similar results. Mean K2P distances and p‐distances within species were both equal to 1.2%. The maximum intraspecific genetic distances of all species were less than 2%, with the exception of Palaemon modestus and M. maculatum. Various analyses have shown that P. modestus and M. maculatum have a large genetic differentiation, which may indicate the existence of cryptic species. By contrast, DNA barcoding could unambiguously discriminate 13 species and detect cryptic diversity. Our results demonstrate the high efficiency of DNA barcoding to delimit freshwater shrimp diversity and detect the presence of cryptic species.     

Relations among whole blood serotonin and sex,age, diet,and social status in Macaca nemestrina

Whole blood serotonin (WBS) determinations were made in 56 pigtailed macaques (Macaca nemestrina) with approximately equal numbers in three age groups: young-adult (4–5 years), middle-aged (13–14 years), and old (over 18 years). The animals were housed in ten living groups with one female and male of each age group in each living group. Half of the groups were fed a diet high in lipid, cholesterol, simple sugars, and sodium; the other half received a restricted diet. Three determinations per animal showed WBS levels to be stable at two times of day and at a 1-week interval, and individual differences were stable over several months' time. The mean WBS concentrations in M. nemestrina were found to be considerably higher than those reported for other species. The mean levels in females were almost 25% higher than in males. No significant effects of age, diet, or dominance status were detected.     

The What,Why and How of Primate Taxonomy

Taxonomy has a well-defined role, which is much more than simply stamp-collecting and pigeon-holing. Species are the units of classification, biogeography and conservation; as such they must be defined as objectively as possible. The biological species concept, still widely used in biology, though predominantly by non-taxonomists and all too often misunderstood, is a process-based concept, which offers no criterion for the classification of allopatric populations beyond inference and hypothesis. The phylogenetic species concept—a pattern-based concept—is as nearly objective as we are likely to get. Amount of difference is not a criterion for recognizing species. It is not possible to insist on monophyly at the specific level, but it is mandatory for the higher categories (genus, family, etc.). The rank we assign to a given supraspecific category should be determined by its time depth.     

Habitat use,density, and conservation status of the white-browed guan (Penelope jacucaca Spix, 1825)

The white-browed guan (Cracidae: Penelope jacucaca) is an endemic bird species to the Caatinga, the largest centre of dry forest in South America. This taxon was considered Vulnerable by the International Union for Conservation of Nature (IUCN) due to continued habitat loss within its distribution and intense hunting pressure that contributed to population declines. However, information on population aspects and habitat use by P. jacucaca, which is fundamental for monitoring its conservation status, is not available. We studied habitat use (analysed in a Generalized Linear Model) and population density (estimated by distance sampling) in a specific area in Northeast Brazil. Using species distribution modelling (SDM), forest cover loss data (performed in the MaxEnt program) and quantitative information about hunting, more rigorous estimates of the distribution limits, available habitat, and population declines of P. jacucaca were generated. Based on the IUCN criteria, we applied analysed data to reassess the conservation status of the white-browed guan. Local density was estimated at 13.1 individuals/km² and the estimated number of individuals removed per year due to hunting was 121.7 in the forest cover area (110.46 km²) of the Serra de Santa Catarina. Consequently, the annual removal rate of hunted individuals in the study area corresponds to approximately 11% of the population. The habitat use analysis pointed to a strong positive association with seasonally dry deciduous forest (SDDF) vegetation and with arboreal vegetation. The SDM indicated a potential distribution (climatically favourable) area of 675,823 km², and forest cover and loss calculations indicated a total of 81,307 km² of available suitable habitat in 2013. Therefore, comparing these results to the IUCN criteria, we recommend that P. jacucaca remain in the Vulnerable category.     

Integration of hotspot identification,gap analysis,and niche modeling supports the conservation of Chinese threatened higher plants

A significant fraction of higher plants in China are threatened due to dramatic landscape transformation and increasing climate change. However, the conservation effectiveness of threatened higher plants (THPs) and their response to climate change are still underexplored to date. Based on the latest list of THPs in China, we obtained 102 593 occurrence records with latitude and longitude for 3858 THPs. By integrating the distribution patterns of three biodiversity indexes (i.e., species richness, species complementarity, and weighted endemism) and 10 plant categories, we identified hotspots for THPs and calculated the conservation effectiveness of nature reserves. We then selected 1959 THPs to project the shift of species richness and range sizes under climate change (representative concentration pathway [RCP] 2.6 and RCP 8.5). In total, 16 hotspot areas covering 7.38% of Chinese land area and containing 91.73% of THPs were identified. Current nature reserves protected 35.05% of hotspots, 73.07% of all THPs, and 56.64% of narrow-ranged species. By the 2070s, the species richness of THPs were predicted to decrease in Southeast and Central China, and 42.42% (RCP 2.6) and 51.40% (RCP 8.5) of the 1959 THPs would confront habitat contraction. Future conservation efforts should focus on the conservation gaps and carry out targeted conservation for THPs with narrow distribution range. In order to cope with climate change, the hotspots with relatively low species loss can serve as important areas to contain current species diversity and the areas with high species gain offer opportunities for ex-situ conservation of THPs.     

Species,sets, and the derivative nature of Philosophy

Concepts and methods originating in one discipline can distort the structure of another when they are applied to the latter. I exemplify this mostly with reference to systematic biology, especially problems which have arisen in relation to the nature of species. Thus the received views of classes, individuals (which term I suggest be replaced by units to avoid misunderstandings), and sets are all inapplicable, but each can be suitably modified. The concept of fuzzy set was developed to deal with species and I defend its applicability. Taxa at all levels are real and participate in biological processes. Analysis of cause and pattern provides the deep structure in which metabiology is grounded; violation of this principle has led to diverse errors in biology.