New amino-dithiaphospholanes and phosphoramidodithioites and their rhodium and iridium complexes

New sulfur derivatives of phosphoramidite ligands were synthesized and the impact of the sulfur unit on the spectroscopic properties of their rhodium and iridium complexes was investigated. The new ligands Bn₂NPSCH₂CH₂S^a(P-S^a) (Bn = benzyl, 4), Bn₂NPSCHCHS^a(CH₂)₃C^aH₂(P-S^a)(C^a-S^a) (6) and Bn₂NP(4-XC₆H₄OMe)₂ (X = S, 7a; X = O, 7b) were converted to the rhodium and iridium complexes trans-[Rh(CO)Cl(L)₂] (L = 4, 6, 7), [RhCl(COD)(L)] (L = 4, 6, 7), [IrCl(COD)(7a)] and [IrCl₂Cp∗(6)]. For comparison, some phosphoramidite complexes of these formulations also were synthesized. The new metal complexes were spectroscopically analyzed. For the carbonyl complexes, the ν_CO IR stretching frequencies were lower than for the corresponding phosphite and phosphoramidite ligands. The ¹J_PRh coupling constants for the rhodium complexes with the new ligands were also smaller than for the respective phosphoramidite and phosphite complexes. Finally, the ¹J_PSe coupling constants of the selenides of the new ligands were lower than those of the phosphoramidite ligands but higher than for PPh₃. The spectroscopic data reveal that the new thio ligands 4, 6 and 7a are more electron donating than phosphites and phosphoramidites but less electron donating than PPh₃.     

Ecological and molecular perspectives on responders and non-responders to probiotics and prebiotics

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Kinetics and thermodynamics of peroxidase- and laccase-catalyzed oxidation of N-substituted phenothiazines and phenoxazines

N -substituted phenothiazines (PTs) and phenoxazines (POs) catalyzed by fungal Coprinus cinereus peroxidase and Polyporus pinsitus laccase were investigated at pH 4–10. In the case of peroxidase, an apparent bimolecular rate constant (expressed as k _cat/K _m) varied from 1 ×10⁷M⁻¹s⁻¹to 2.6×10⁸M⁻¹s⁻¹ at pH 7.0. The constants for PO oxidation were higher in comparison to PT. pH dependence revealed two or three ionizable groups with pK _a values of 4.9–5.7 and 7.7–9.7 that significantly affected the activity of peroxidase. Single-turnover experiments showed that the limiting step of PT oxidation was reduction of compound II and second-order rate constants were obtained which were consistent with the constants at steady-state conditions. Laccase-catalyzed PT and PO oxidation rates were lower; apparent bimolecular rate constants varied from 1.8×10⁵M⁻¹s⁻¹ to 2.0×10⁷M⁻¹s⁻¹ at pH 5.3. PO constants were higher in comparison to PT, as was the case with peroxidase. The dependence of the apparent bimolecular constants of compound II or copper type 1 reduction, in the case of peroxidase or laccase, respectively, was analyzed in the framework of the Marcus outer-sphere electron-transfer theory. Peroxidase-catalyzed reactions with PT, as well as PO, fitted the same hyperbolic dependence with a maximal oxidation rate of 1.6×10⁸M⁻¹s⁻¹ and a reorganization energy of 0.30 eV. The respective parameters for laccase were 5.0×10⁷M⁻¹s⁻¹ and 0.29 eV. Received: 20 September 1999 / Accepted: 24 February 2000     

Sodium and potassium fluxes and compartmentation in roots of atriplex and oat

K⁺ and Na⁺ fluxes and ion content have been studied in roots of Atriplex nummularia Lindl. and Avena sativa L. cv Goodfield grown in 3 millimolar K⁺ with or without 3 or 50 millimolar NaCl. Compartmental analysis was carried out with entire root systems under steady-state conditions.

Increasing ambient Na⁺ concentrations from 0 to 50 millimolar altered K⁺, in Atriplex, as follows: slightly decreased the cytoplasmic content (Q_c), the vacuolar content (Q_v), and the plasma membrane influx and efflux. Xylem transport for K⁺ decreased by 63% in Atriplex. For oat roots, similar increases in Na⁺ altered K⁺ parameters as follows: plasma membrane influx and efflux decreased by about 80%. Q_c decreased by 65%, and xylem transport decreased by 91%. No change, however, was observed in Q_v for K⁺. Increasing ambient Na⁺ resulted in higher (3 to 5-fold) Na⁺ fluxes across the plasma membrane and in Q_c of both species. In Atriplex, Na⁺ fluxes across the tonoplast and Q_v increased as external Na⁺ was increased. In oat, however, no significant change was observed in Na⁺ flux across the tonoplast or in Q_v as external Na⁺ was increased. In oat roots, Na⁺ reduced K⁺ uptake markedly; in Atriplex, this was not as pronounced. However, even at high Na⁺ levels, the influx transport system at the plasma membrane of both species preferred K⁺ over Na⁺.

Based upon the Ussing-Teorell equation, it was concluded that active inward transport of K⁺ occurred across the plasma membrane, and passive movement of K⁺ occurred across the tonoplast in both species. Na⁺, in oat roots, was actively pumped out of the cytoplasm to the exterior, whereas, in Atriplex, Na⁺ was passively distributed between the free space, cytoplasm, and vacuole.

     

Microscale and miniscale fermentation and screening

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Prostaglandin and thromboxane production by human and guinea-pig macrophages and leucocytes

The ability of partially purified human and guinea-pig haematogenous cell populations, when cultured in vitro, to metabolise arachidonic acid (AA) has been studied. Supernatants from 24 hour cell culture have been subjected to analysis for products of AA metabolism by gas chromatography with electron-capture detection.The cell types studied were human peripheral blood monocytes (both glass adherent and non-adherent), neutrophils, eosinophils and leukemic leucocytes; thoracic duct lymphocytes and lung alveolar macrophages. From the guinea-pig, induced and non-induced macrophage or neutrophil enriched peritoneal exudate populations, lymph node cells, peritoneal eosinophils and peripheral blood platelets were examined. Supernatants were assayed for the presence of PGE₂, PGD₂, PGF_2α, TXB₂ and 6-keto-PGF_1α. In all types studied PGE₂ and TXB₂ were the major products formed. The identification of PGE₂ and TXB₂ was confirmed by GC/MS with multiple ion monitoring.The results have been compared with other reports and their possible significance discussed in relation to the proposed role of prostaglandins as mediators and modulators in immunopathology.     

Mechanical asymmetry during articulation of tibial and femoral cartilages: Local and overall compressive and shear deformation and properties

During knee movement, femoral cartilage articulates against cartilage from the tibial plateau, and the resulting mechanical behavior is yet to be fully characterized. The objectives of this study were to determine (1) the overall and depth-varying axial and shear strains and (2) the associated moduli, of femoral and tibial cartilages during the compression and shearing of apposing tibial and femoral samples. Osteochondral blocks from human femoral condyles (FCs) characterized as normal and donor-matched lateral tibial plateau (TP) were apposed, compressed 13%, and subjected to relative lateral motion. When surfaces began to slide, axial (?E_zz) and shear (E_xz) strains and compressive (E) and shear (G) moduli, overall and as a function of depth, were determined for femoral and tibial cartilages. Tibial ?E_zz was ～2-fold greater than FC ?E_zz near the surface (0.38 versus 0.22) and overall (0.16 versus 0.07). Near the surface, E_xz of TP was 8-fold higher than that of FC (0.41 versus 0.05), while overall E_xz was 4-fold higher (0.09 versus 0.02). For TP and FC, ?E_zz and E_xz were greatest near the surface and decreased monotonically with depth. E for FC was 1.7-fold greater than TP, both near the surface (0.40 versus 0.24 MPa) and overall (0.76 versus 0.47 MPa). Similarly, G was 7-fold greater for FC (0.22 MPa) than TP near the surface (0.03 MPa) and 3-fold higher for FC (0.38 MPa) than TP (0.13 MPa) overall. These results indicate that tibial cartilage deforms and strains more axially and in shear than the apposing femoral cartilage during tibial–femoral articulation, reflecting their respective moduli.     

Kinetics and Energetics of Biomolecular Folding and Binding

The ability of biomolecules to fold and to bind to other molecules is fundamental to virtually every living process. Advanced experimental techniques can now reveal how single biomolecules fold or bind against mechanical force, with the force serving as both the regulator and the probe of folding and binding transitions. Here, we present analytical expressions suitable for fitting the major experimental outputs from such experiments to enable their analysis and interpretation. The fit yields the key determinants of the folding and binding processes: the intrinsic on-rate and the location and height of the activation barrier.Dynamic processes in living cells are regulated through conformational changes in biomolecules—their folding into a particular shape or binding to selected partners. The ability of biomolecules to fold and to bind enables them to act as switches, assembly factors, pumps, or force- and displacement-generating motors (1). Folding and binding transitions are often hindered by a free energy barrier. Overcoming the barrier requires energy-demanding rearrangements such as displacing water from the sites of native contacts and breaking nonnative electrostatic contacts, as well as loss of configurational entropy. Once the barrier is crossed, the folded and bound states are stabilized by short-range interactions: hydrogen bonds, favorable hydrophobic effects, and electrostatic and van der Waals attractions (2).Mechanistic information about folding and binding processes is detailed in the folding and binding trajectories of individual molecules: observing an ensemble of molecules may obscure the inherent heterogeneity of these processes. Single-molecule trajectories can be induced, and monitored, by applying force to unfold/unbind a molecule and then relaxing the force until folding or binding is observed (3–5) (Fig. 1). Varying the force relaxation rate shifts the range of forces at which folding or binding occurs, thus broadening the explorable spectrum of molecular responses to force and revealing conformational changes that are otherwise too fast to detect. The measured force-dependent kinetics elucidates the role of force in physiological processes (6) and provides ways to control the timescales, and even the fate, of these processes. The force-dependent data also provides a route to understanding folding and binding in the absence of force—by extrapolating the data to zero force via a fit to a theory.Open in a separate windowFigure 1Schematic of the output from a force-relaxation experiment. The applied force is continuously relaxed from the initial value F₀ until the biomolecule folds or binds, as signified by a sharp increase in the measured force. From multiple repeats of this experiment, distributions of the folding or binding forces are collected (inset). Fitting the force distributions with the derived analytical expression yields the key parameters that determine the kinetics and energetics of folding or binding.In this letter, we derive an analytical expression for the distribution of transition forces, the major output of force-relaxation experiments that probe folding and binding processes. The expression extracts the key determinants of these processes: the on-rate and activation barrier in the absence of force. The theory is first developed in the context of biomolecular folding, and is then extended to cover the binding of a ligand tethered to a receptor. In contrast to unfolding and unbinding, the reverse processes of folding and binding require a theory that accounts for the compliance of the unfolded state, as well as the effect of the tether, to recover the true kinetic parameters of the biomolecule of interest.In a force-relaxation experiment, an unfolded biomolecule or unbound ligand-receptor complex is subject to a stretching force, which is decreased from the initial value F₀ as the pulling device approaches the sample at speed V until a folding or binding transition is observed (Fig. 1) (3–5). Define S(t) as the probability that the molecule has not yet escaped from the unfolded (implied: or unbound) state at time t. When escape is limited by one dominant barrier, S(t) follows the first-order rate equationS˙(t)≡dS(t)dt=−k←(F(t))S(t),where k_←(F(t)) is the on-rate at force F at time t. Because, prior to the transition, the applied force decreases monotonically with time, the distribution of transition forces, p(F), is related to S(t) through p(F)dF=S˙(t)dt, yieldingp(F)=−k←(F)F˙(F)e−∫F0Fk←(F′)F˙(F′)dF′.(1)Here F˙(F)≡dF(t)/dt<0 is the force relaxation rate. The proper normalization of p(F) is readily confirmed by integrating Eq. 1 from the initial force F₀ to negative infinity, the latter accounting for transitions that do not occur by the end of the experiment. Note that the expression for the distribution of folding/binding forces in Eq. 1 differs from its analog for the unfolding process (7) by the limits of integration and a negative sign, reflecting the property of a relaxation experiment to decrease the survival probability S(t) by decreasing the force. Converting the formal expression in Eq. 1 into a form suitable for fitting experimental data requires establishing functional forms for k_←(F) and F˙(F) and analytically solving the integral. These steps are accomplished below.The on-rate k_←(F) is computed by treating the conformational dynamics of the molecule as a random walk on the combined free energy profile G(x,t) = G₀(x) + G_pull(x,t) along the molecular extension x. Here G₀(x) is the intrinsic molecular potential and G_pull(x,t) is the potential of the pulling device. When G(x,t) features a high barrier on the scale of k_BT (k_B is the Boltzmann constant and T the temperature), the dynamics can be treated as diffusive. The unfolded region of the intrinsic potential for a folding process, unlike that for a barrierless process (8), can be captured by the functionG0(x)=ΔG‡ν1−ν(xx‡)11−ν−ΔG‡ν(xx‡),which has a sharp (if ν = 1/2, Fig. 2, inset) or smooth (if ν = 2/3) barrier of height ΔG^‡ and location x^‡. The potential of a pulling device of stiffness κ_S is G_pull(x,t) = κ_S/2(X₀ – Vt – x)² with an initial minimum at X₀ (corresponding to F₀). Applying Kramers formalism (9) to the combined potential G(x,t), we establish the analytical form of the on-rate at force F(t),k←(F)=k0(1+κSκU(F))1ν−12(1+νFx‡ΔG‡)1ν−1×eβΔG‡[1−(1+κSκU(F))2ν1−ν−1(1+νFx‡ΔG‡)1ν],where k₀ is the intrinsic on-rate, β ≡ (k_BT)⁻¹, andκU(F)=ν(1−ν)2ΔG‡x‡2(1+νFx‡ΔG‡)2−1νis the stiffness of the unfolded biomolecule under force F (see the Supporting Material for details on all derivations). The full nonlinear form of G_pull(x,t) was necessary in the derivation because, in contrast to the typically stiff folded state, the unfolded state may be soft (to be exact, 1/2κ_S x^‡2(F) << k_BT may not be satisfied) and thus easily deformed by the pulling device. Because of this deformation, the folding transition faces an extra contribution (regulated by the ratio κ_S/κ_U(F)) to the barrier height, typically negligible for unfolding, that decreases the on-rate in addition to the applied force F.Open in a separate windowFigure 2Contributions to the free energy profile for folding (inset) and binding (main figure). The derived expression (Eq. 2) extracts the on-rate and the location and height of the activation barrier to folding. When applied to binding data, the expression extracts the parameters of the ligand-tether-receptor (LTR) potential G˜0 (x); the proposed algorithm (Eqs. 3 and 4) removes the contribution of the tether potential G_teth(x) to recover the parameters of the intrinsic ligand-receptor (LR) potential G₀(x).The last piece required for Eq. 1, the loading rate F˙(F), is computed as the time derivative of the force F(t) on the unfolded molecule at its most probable extension at time t:F˙(F)=−κSV1+κS/κU(F).Finally, we realize that the integral in Eq. 1 can be solved analytically exactly, both for ν = 1/2 and ν = 2/3, resulting in the analytical expression for the distribution of folding forces:p(F)=k←(F)|F˙(F)|e−k←(F)β|F˙(F)|x‡(1+κSκU(F))νν−1(1+νFx‡ΔG‡)1−1ν.(2)Equation 2 can be readily applied to (normalized) histograms from force-relaxation experiments to extract the parameters of the intrinsic kinetics and energetics of folding. Being exact for ν = 1/2 and ν = 2/3, Eq. 2 is also an accurate approximation for any ν in the interval 1/2 < ν < 2/3 as long as κ_S ≲ κ_U (F) (see Fig. S1 in the Supporting Material). For simplicity, in Eq. 2 we have omitted the term containing F₀ as negligible if F₀ is large enough to prevent folding events.The solution in Eq. 2 reveals properties of the distribution of folding forces that distinguish it from its unfolding counterpart (7):

• 1.The distribution has a positive skew (Fig. 3), as intuitively expected: the rare folding events occur at high forces when the barrier is still high.Open in a separate windowFigure 3Force histograms from folding (left) and binding (right) simulations at several values of the force-relaxation speed (in nanometers per second, indicated at each histogram). Fitting the histograms with the analytical expression in Eq. 2 (lines) recovers the on-rate and activation barrier for folding or binding (2.Increasing the relaxation speed shifts the distribution to lower forces (Fig. 3): faster force relaxation leaves less time for thermal fluctuations to push the system over a high barrier, causing transitions to occur later (i.e., at lower forces), when the barrier is lower.
• 3.The stiffness κ_S and speed V enter Eq. 2 separately, providing independent routes to control the range of folding forces and thus enhance the robustness of a fit.

The application of the above framework to binding experiments on a ligand and receptor connected by a tether (3) involves an additional step—decoupling the effect of the tether—to reconstruct the parameters of ligand-receptor binding. Indeed, the parameters extracted from a fit of experimental histograms to Eq. 2 characterize the ligand-tether-receptor (LTR) potential (k˜0, x˜‡, ΔG˜‡, ν) (Fig. 2). The parameters of the natural ligand-receptor (LR) potential (k₀, x^‡, ΔG^‡) can be recovered using three characteristics of the tether: contour length L; persistence length p; and extension Δℓ of the tether along the direction of the force in the LTR transition state. The values of L and p can be determined from the force-extension curve of the tether (10); these define the tether potential G_teth(x) (Fig. 2). The value of Δℓ can be found from an unbinding experiment (7) on LTR and the geometry of the tether attachment points (see Fig. S3). Approximating the region of the LR potential between the transition and unbound states as harmonic, with no assumptions about the shape of the potential beyond x^‡, the ligand-receptor barrier parameters are thenx‡=α−1α−2x˜‡,ΔG‡=(α−1)22(α−2)x˜‡Fteth(Δℓ+x˜‡),(3)and the intrinsic unimolecular association rate isk0≈k˜0(βΔG‡)32(βΔG˜‡)1ν−12(x˜‡x‡)2eβ(ΔG˜‡−ΔG‡).(4)Here, the force value Fteth(Δℓ+x˜‡) is extracted from the force-extension curve of the tether at extension Δℓ+x˜‡ andα=2(ΔG˜‡−Gteth(Δℓ)+Gteth(Δℓ+x˜‡))x˜‡Fteth(Δℓ+x˜‡),where G_teth(x) is the wormlike-chain potential (see Eq. S13 in the Supporting Material). Equations 3–4 confirm that a tether decreases the height and width of the barrier (see Fig. 2), thus increasing the on-rate.In Fig. 3, the developed analytical framework is applied to folding and binding force histograms from Brownian dynamics simulations at parameters similar to those in the analogous experimental and computational studies (3,5,11) (for details on simulations and fitting procedure, see the Supporting Material). For the stringency of the test, the simulations account for the wormlike-chain nature of the molecular unfolded and LTR unbound states that is not explicitly accounted for in the theory. With optimized binning (12) of the histograms and a least-squares fit, Eqs. 2–4 recover the on-rate, the location and the height of the activation barrier, and the value of ν that best captures how the kinetics scale with force (

1.Multiple relaxation speeds,

2.Folding/binding events at low forces, and

3.A large number of events at each speed.

Table 1

On-rate and the location and height of the activation barrier from the fit of simulated data to the theory in Eq. 2

Total and Regional Fat and Serum Cardiovascular Disease Risk Factors in Lean and Obese Children and Adolescents

Objective: This study was conducted to evaluate the association of total and central adiposity with serum cardiovascular disease (CVD) risk factors in lean and obese Portuguese children and adolescents. Research Methods and Procedures: A total of 87 girls (13.2 ± 1.6 years old, 29.9 ± 6.4% body fat [mean ± SD]) and 72 boys (13.2 ± 1.6 years old, 20.8 ± 9.9% body fat) volunteered for the study. Whole‐body composition and fat distribution, from DXA and anthropometry, and serum lipids, lipoproteins, and apolipoproteins were evaluated. Results: The sum of three trunk skinfolds (STS) was highly correlated with total trunk fat mass measured by DXA (p < 0.001). Body mass index, DXA‐measured percentage of body fat, trunk fat mass, STS, and the waist‐to‐height ratio were generally found to be associated with triacylglycerol, the ratio of total cholesterol (TC) to high density lipoprotein‐cholesterol (HDL‐C), low density lipoprotein‐cholesterol (LDL‐C), and apolipoprotein B levels, (significant age‐adjusted r between 0.16 and 0.27, p < 0.05). Body mass index, STS, and the waist circumference were also associated with HDL‐C (p < 0.05), whereas no body composition variable significantly correlated with TC or apolipoproteins A‐I. The STS was significantly correlated with HDL‐C (p < 0.01), TC/HDL‐C (p < 0.05), and apolipoproteins A‐I (p < 0.05) independently of whole‐body fatness. Obese subjects (n = 73) had higher TC, LDL‐C, TC/HDL‐C, and apolipoprotein B than did non‐obese subjects (n = 86), and significant associations between central adiposity and some lipid variables (triacylglycerol and HDL‐C) were found in obese children and adolescents that were not present in leaner individuals. Discussion: DXA‐ and anthropometry‐based whole‐body and central fat measures are associated with serum CVD risk factors in Portuguese boys and girls. Obese children and adolescents have a poorer lipid profile than do their leaner counterparts. Trunk skinfolds, which are easy to obtain even in large samples, predict CVD risk factors to the same extent as DXA‐based variables, in some cases, independently of total fatness.     

Nutrient restriction and realimentation in beef cows during early and mid-gestation and maternal and fetal hepatic and small intestinal in vitro oxygen consumption

Objectives were to determine the effects of advancing gestation, maternal nutrient restriction during early and mid-gestation, and realimentation on fetal liver and jejunal mass and energy use in both dams and fetuses. On day 30 of pregnancy, multiparous, non-lactating beef cows (initial BW=621±11.3 kg and body condition score=5.1±0.1) were assigned to one of the two dietary treatments: control (CON; 100% requirements; n=18) and restricted (R; 60% requirements; n=28). On day 85, cows were slaughtered (CON, n=6; R, n=6), and remaining cows continued on control (CC; n=12) and restricted (RR; n=12) diets, or were realimented to the control diet (RC; n=11). On day 140, cows were slaughtered (CC, n=6; RR, n=6; RC, n=5), remaining cows continued on the control diet (CCC, n=6; RCC, n=5), or were realimented to the control diet (RRC, n=6). On day 254, all remaining cows were slaughtered. Maternal liver O₂ consumption linearly increased (P⩽0.04) and jejunal weight (g/kg) linearly decreased (P=0.04) as gestation advanced in CON groups. Fetal BW, and hepatic and small intestinal absolute mass, protein content and O₂ consumption linearly increased (P⩽0.04) as pregnancy advanced in CON groups. However, mass and O₂ consumption relative to BW linearly decreased (P⩽0.001) in the fetal liver in CON groups. When analyzing the effects of dietary treatment, at day 85, fetal jejunal O₂ consumption (mol/min per kg BW) was lower (P=0.02) in the R group when compared with the CON group. At day 140, maternal hepatic weight (g) was lower (P=0.02) in RC and RR cows when compared with CC, and fetal jejunual O₂ consumption (mmol/min per mg tissue and mmol/min per g protein) was greater (P⩽0.02) in RC when compared with RR. At day 254, maternal hepatic O₂ consumption (absolute and relative to BW) was lower (P⩽0.04) in the RCC cows when compared with RRC. Fetal hepatic weight was lower (P=0.05) in the CCC group when compared with RCC and RRC. The changes in response to nutrient restriction and realimentation in both the dam and fetus may indicate an adaptation to a lower amount of available nutrients by altering tissue mass and metabolism.     

Nucleosomes and subnucleosomes: heterogeneity and composition

Previous studies (Varshavsky, Bakayev and Georgiev, 1976a) have shown that chromatin subunits (mononucleosomes) and their oligomers in a mild staphylococcal nuclease digest of chromatin display a heterogeneous content of histone H1. We now report that a mild staphylococcal nuclease digest of either chromatin or nuclei from mouse Ehrlich tumor cells contains mononucleosomes of three discrete kinds. The smallest mononucleosome (MN₁) contains all histones except H1 and a DNA fragment 140 base pairs (bp) long. The intermediate mononucleosome (MN₂) contains all five histones and a DNA fragment 170 bp long. The third mononucleosome (MN₃) also contains all five histones, but its DNA fragment is longer and more heterogeneous in size (180–200 bp). Most of the MN₃ particles are rapidly converted by nuclease into mononucleosomes MN₁ and MN₂ There exists, however, a relatively nuclease-resistant subpopulation of the MN₃ mononucleosomes. These 200 bp MN₁ particles contain not only histones but also nonhistone proteins, and are significantly more resistant to nuclease than the bulk of MN₃ particles and the smaller mononucleosomes MN₁ and MN₂.There are eight major kinds of staphylococcal nuclease-produced soluble subnucleosomes (SN). The SN₁ is a set of naked double-stranded DNA fragments ～20 bp long. The SN₂ is a complex of a specific basic nonhistone protein (molecular weight ～16,000 daltons) and a DNA fragment ～27 bp long. The SN₃ contains histone H4, the above-mentioned specific nonhistone protein and a DNA fragment ～27 bp long. The SN₄ contains histones H2a, H2b, H4 and a DNA fragment ～45 bp long. The SN₅ contains histones H2a, H2b, H3 and a DNA fragment ～55 bp long. The SN₆ is a complex of histone H1 and a DNA fragment ～35 bp long. Subnucleosomes SN₇ and SN₈ each contain all the histones except H1, and DNA fragments ～100 and ～120 bp long, respectively.Nuclease digestion of isolated mono- or dinucleosomes does not produce some of the subnucleosomes. These and related findings indicate that the cleavage required to generate these subnucleosomes result from some aspect of chromatin structure which is lost upon digestion to mono- and dinucleosomes.     

Ovule and seed anatomy ofCistaceae and relatedMalvanae

Ovule and especially seed anatomy of eight species ofCochlospermaceae, Bixaceae, Cistaceae, Monotoideae, Pakaraimaeoideae (two subfamilies ofDipterocarpaceae), andSarcolaenaceae were investigated. All representatives show a bixoid chalazal region in the seed as probable exclusive synapomorphy among angiosperms. The palisade layer of the exotegmen is curved inwards at its proximal end and forms a dome-shaped structure. A plug of hypostase tissue with an annulus/core structure fits into this dome. Moreover, two additional tissue types in the hypostase can be found in some representatives of the group. These and other micromorphological, wood anatomical, and floral morphological characters, indicate that the taxa form a monophyletic group close toMalvales s. str. The form of the starch grains in the endosperm is compared and is described for the first time forPakaraimaea (Dipterocarpaceae) andLeptolaena (Sarcolaenaceae). The position ofDiegodendron close toBixa and the presumably more distant positions ofMuntingia andNeuradaceae are discussed.     

Photosynthesis and Transpiration in Leaves and Ears of Wheat and Barley Varieties

Carbon exchange rate (CER) and transpiration were measured inflag leaves, whole ears, glumes (referring to the total areaof glumes and lemmas) and awns, in six hexaploid spring wheats(Triticum aestivum L.), three cultivated tetraploid spring wheats(T. turgidum L.), four wild tetraploid wheats (T. dicoccoides),eight six-rowed barleys (Hordeum vulgare L.) and five two-rowedbarleys (H. vulgare L.). Differences between varieties and between species in total earCER and transpiration were associated largely with differencesin ear surface area rather than with rates per unit area. Ratesof CER and transpiration per unit area of ears were 40–80%of those of flag leaves, depending on the species. However, since ear surface area was greater than flag leaf areaby a factor of 1.1, 3.9, 5.5 and 4.4, in hexaploid wheat, tetraploidwheat, six-rowed barley, and two-rowed barley, respectively,total ear CER reached up to 90% of that of the flag leaf. The contribution of awns to total ear CER depended largely ontotal awn surface area per ear, rather than on CER per unitawn area. Awns contributed about 40–80% of total spikeCER, depending on the species, but only 10–20% of spiketranspiration. The disproportionately small contribution ofawns to ear transpiration was caused by the very low rate oftranspiration per unit area of awns. Thus, while transpirationratio (CER/transpiration) was about the same in flag leavesand glumes, it was higher by several orders of magnitude inthe awns. A large amount of awns in the ear is therefore a drought adaptiveattribute in these cereals, for which tetraploid wheat exceededhexaploid wheat and six-rowed barley exceeded two-rowed barley. Key words: Carbon exchange rate, Transpiration, Barley, Wheat     

Polyploidy and Evolution in Wild and CultivatedDahliaSpecies

Observations on the chromosomes of nine species ofDahliaCav.(Asteraceae, Heliantheae—Coreopsidinae) show that somehave 2n=32, others 2n=64, with a third group having both chromosomenumbers in the same taxon. Karyotype investigations showed thatthe chromosomes can be divided into groups of 14 metacentricsplus two submetacentrics per set of 16 chromosomes.In situhybridizationusing an rRNA gene probe indicated that the 2n=32 species haveeight hybridization sites whilst the 2n=64 species have 16 sites.Silver nitrate staining of these regions showed that not allof these nucleolar organizers are active. Meiotic analysis atmetaphase I and pachytene, by synaptonemal complex spreading,shows that the 2n=32 species have exclusive bivalent formationwhereas the 2n=64 species have small numbers of univalents plusquadrivalents in addition to bivalents. This study proposesthatDahliaspecies with 2n=32 are allotetraploids whereas thosespecies and chromosome races with 2n=64 are their autopolyploidderivatives. We suggest that a bivalent-promoting mechanismin the 2n=32 species may account for their meiotic behaviouras their component genomes appear so similar, and that thismechanism is also responsible for the low number of quadrivalentsin the 2n=64 taxa.Copyright 1998 Annals of Botany Comapny Chromosome pairing,Dahlia, in situhybridization, karyotype analysis, polyploidy, synaptonemal complex analysis     

Synthesis and topoisomerase II inhibitory and cytotoxic activity of oxiranylmethoxy- and thiiranylmethoxy-chalcone derivatives

In order to find potential anticancer drug candidate targeting topoisomerases enzyme, we have designed and synthesized oxiranylmethoxy- and thiiranylmethoxy-retrochalcone derivatives and evaluated their pharmacological activity including topoisomerases inhibitory and cytotoxic activity. Of the compounds prepared compound 25 showed comparable or better cytotoxic activity against cancer cell lines tested. Compound 25 inhibited MCF7 (IC₅₀: 0.49 ± 0.21 μM) and HCT15 (IC₅₀: 0.23 ± 0.02 μM) carcinoma cell growth more efficiently than references. In the topoisomerases inhibition test, all the compounds were inactive to topoisomerase I but moderate inhibitors to topoisomerase II enzyme. Especially, compound 25 inhibited topoisomerase II activity with comparable extent to etoposide at 100 μM concentrations. Correlation between cytotoxicity and topoisomerase II inhibitory activity implies that compound 25 can be a possible lead compound for anticancer drug impeding the topoisomerase II function.     

Arylazoimidazoliumchloride and chlorometallates: Spectroscopic and structural characterization

Protonation or dialkylation of 2-(arylazo)imidazoles (RaaiH) has generated azoimidazolium motif (RaaiH₂⁺, RaaiR^′H⁺, RaaiR^′₂⁺ where R = H, CH₃ and R^′ = Me, Et, -CH₂Ph). Electrostatic attraction between imdazolium cation and counter ions like Cl⁻, , has generated hydrogen bonded azoimidazolium-chloride/chlorometallated networks. The single crystal X-ray structure of 1-benzyl-2-(phenylazo)imidazolium chloride shows tape like 1-D network of [Cl(H₂O)₄]⁻. Aquated Cl⁻ forms 10 membered supracycle through hydrogen bonding with imidazolium ion. The X-ray structures of [HaaiMe₂ (1,3)]⁺[Me₂NH₂]⁺ [ZnCl₄]²⁻ and [MeaaiH₂⁺·H₂O]₂[PtCl₆]²⁻ show hydrogen bonded chlorometallate chain penetrated into the channel developed by organic motif. Azoimidazolium units are associated through π···π and C-H···π interactions to strengthen the supramolecular geometry.     

Cryoprotective and osmotic responses to cold acclimation and freezing in freeze-tolerant and freeze-intolerant earthworms

In this paper we present the results of physiological responses to winter acclimation and tissue freezing in a freeze-tolerant Siberian earthworm, Eisenia nordenskioeldi, and two freeze-intolerant, temperate earthworm species, Lumbricus rubellus and Aporrectodea caliginosa. By analysing the physiological responses to freezing of both types we sought to identify some key factors promoting freeze tolerance in earthworms. Winter acclimation was followed by a significant increase in osmolality of body fluids in E. nordenskioeldi, from 197 mosmol kg⁻¹ in 10 °C-acclimated animals to 365 mosmol kg⁻¹ in animals acclimated to 0 °C. Cold acclimation did not cause any change in body fluid osmolality in the two freeze-intolerant species. As a response to ice formation in the body, the freeze-intolerant species produced copious amounts of slime and expulsion of coelomic fluids, and thereby lost 10–30% of their total water content. Contrary to this, the freeze-tolerant species did not lose water upon freezing. At temperatures down to −6.5 °C, the ice content in the freeze-tolerant E. nordenskioeldi was significantly lower than in L. rubellus. At lower temperatures there were no differences in ice content between the two species. Cold acclimated, but unfrozen, specimens of all three species had low levels of ammonia, urea, lactate, glycerol and glucose. As a response to ice formation, glucose levels significantly increased within the first 24 h of freezing. This was most pronounced in E. nordenskioeldi where a 153-fold increase of glucose was seen (94 mmol · l⁻¹). In L. rubellus and A. caliginosa a 19-fold and 17-fold increase in glucose was seen. This is the first study on physiological mechanisms promoting freeze tolerance in E. nordenskioeldi, or any other oligochaete. Our results suggest that the cryoprotective system of this species more closely resembles that of freeze-tolerant anurans, which synthesize cryoprotectants only after tissues begin to freeze, than that of cold-hardy invertebrates which exhibit a preparatory accumulation of cryoprotectants during seasonal exposure to low temperature. Accepted: 10 February 1999     

Various infection status and molecular evidence for horizontal transmission and recombination of Wolbachia and Cardinium among rice planthoppers and related species

Wolbachia and Cardinium are widely distributed and are considered important for their ability to disturb reproduction and affect other fitness‐related traits of their hosts. By using multilocus sequence typing (MLST), RFLP (restriction fragment length polymorphism) and 16S ribosomal DNA gene sequencing methods, we extensively surveyed Wolbachia and Cardinium infection status of four predominant rice planthoppers and one kind of leafhopper in different rice fields. The results demonstrated that Sogatella furcifera (Horváth) and Laodelphax striatellus (Fallén) were infected with the same Wolbachia strain (wStri), while Nilaparvata lugens (Stål) and its closely related species Nilaparvata muiri China were infected with two phylogeneticlly distant strains, wLug and wMui, respectively. Three new Wolbachia strains (provisionally named wMfas1, wMfas2 and wMfas3) were detected in the leafhopper Macrosteles fascifrons (Stål). Only S. furcifera was co‐infected with Cardinium, which indicated that the distribution of Cardinium in these rice planthoppers was narrower than that of Wolbachia. Unambiguous intragenic recombination events among these Wolbachia strains and incongruent phylogenetic relationships show that the connections between different Wolbachia strains and hosts were more complex than we expected. These results suggest that horizontal transmission and host associated specialization are two factors affecting Wolbachia and Cardinium infections among planthoppers and their related species.     

Prevalence and distribution of airborne and waterborne fungi and actinomycetes in the Nile river

The objective of this research was to investigate the prevalence and distribution of airborne and waterborne fungi and actinomycetes along the main stream of the Nile river during April to July, 2005. Air and water samples were collected at eight sites within a ~50 km stretch of the river. The distribution and prevalence of air and water microorganisms varied with location. The highest counts of airborne fungi (516 CFU/p/h) and actinomycetes (222 CFU/p/h) were detected at suburban sites near cultivated areas. However, the highest counts of waterborne fungi (56.4 CFU/ml) and actinomycetes (15.4 CFU/ml) were detected at Al-Galaa (city centre) and Kafr-El-elwe (south Cairo), respectively. A total of 1,816 fungal colonies (943 isolates from air and 873 from water samples) belonging to 27 genera were identified. Aspergillus, Alternaria, Cladosporium, and yeasts were the predominant fungal types in both air and water environments. Dreschlera, Emericella, Nigrospora, Spicaria, Stachybotrys, and Verticillium were only detected in the air, and Epicoccum, Philaphora, Phoma and Ulocladium were only detected in the water. Mycotoxin-producing fungi represented by Aspergillus flavus, Aspergillus parasiticus, Penicillium, Fusarium, and Trichoderma were found in the air and water environments. Significant differences (P ≤ 0.05) were found between fungal populations in air and water at different sampling sites. No significant differences (P ≥ 0.05) were found between waterborne actinomycetes. Sampling location, human activity, and pollution load are the main factors affecting the variability and biodiversity of microorganisms in different microenvironments.     

Syndromic Surveillance and Patients as Victims and Vectors

Syndromic surveillance uses new ways of gathering data to identify possible disease outbreaks. Because syndromic surveillance can be implemented to detect patterns before diseases are even identified, it poses novel problems for informed consent, patient privacy and confidentiality, and risks of stigmatization. This paper analyzes these ethical issues from the viewpoint of the patient as victim and vector. It concludes by pointing out that the new International Health Regulations fail to take full account of the ethical challenges raised by syndromic surveillance.