Variety-specific actinomycete complexes associated with barley roots in soddy podzolic soil

The root-colonizing actinomycete complexes of genotypically different barley plants grown in soddy podzolic soil were found to contain streptomycetes of the sections Cinereus (series Chromogenes, Achromogenes, and Aureus) and Roseus (series Fradiae), dominant being streptomycetes of the section Cinereus ser. Chromogenes. The abundance and diversity of soil streptomycetes in the barley rhizoplane increased in the order: var. 999-93 < var. Kumir < var. Novichok < var. 889-93. Experiments revealed functional specificity in the root-associated actinomycete complexes of different barley varieties. The actinomycete complex colonizing the barley var. 999-93 roots was distinguished by a wide range of utilizable root exudate metabolites and a low occurrence rate of antagonistic species.     

Actinomycete complexes in the rhizosphere of winter rye on soddy podzolic soil

The structure of actinomycete complexes in the rhizosphere of winter rye (Secale cereale L.) varieties originating from different ecosystems and geographical zones was studied in field experiments on soddy podzolic soil. In addition to streptomycetes, the complexes studied contained actinomycetes of the genera Micromonospora and Streptosporangium, represented at high occurrence and comparable abundance rates. The rhizosphere of most of the studied rye varieties was dominated by micromonosporas. The antifungal potential of mycelial prokaryotes associated with winter rye was assessed. The taxonomic and functional structure of actinomycete complexes was shown to be similar in rye varieties originating from the nonchernozem zone of Russia. However, the actinomycete complex proved to be much different in the rye variety that developed in the steppe zone of the lower Volga region.__________Translated from Mikrobiologiya, Vol. 74, No. 2, 2005, pp. 271–277.Original Russian Text Copyright © 2005 by Shirokikh, Merzaeva.     

Some Approaches to the Selective Isolation of Actinomycetes of the Genus Actinomadura from Soil

Some approaches to the selective isolation of actinomycetes of the genus Actinomadura from soil are described. The approach that involves the thermal treatment of soil samples and their plating onto Gauze 1 medium with the antibiotics nystatin, nalidixic acid, and rubomycin provides for an increased amount of actinomaduras isolated from the soil actinomycete complex and for a decreased amount of streptomycetes.     

Isolation of Endophytic Actinomycetes From Roots and Leaves of Banana (Musa Acuminata) Plants and Their Activities Against Fusarium oxysporumf. sp. cubense

Two hundred and forty-two actinomycete strains were isolated from the interior of leaves and roots of healthy and wilting banana plants. Most of them were streptomycetes, Streptomyces griseorubiginosus-like strains were the most frequently isolated strains. Community analysis demonstrated increased actinomycete diversity in wilting leaves compared to that in healthy leaves, similar actinomycete communities were found in wilting and healthy roots. Screening of the isolates for antagonistic activity against Fusarium oxysporumf. sp. cubenserevealed that the proportion of antagonistic streptomycetes in healthy roots was higher than that in wilting roots (P < 0.01), but no difference was found between antagonistic strains isolated from healthy and wilting leaves. The potential biological control of Panama disease of banana by endophytic streptomycetes, especially Streptomyces griseorubiginosus-like strains was discussed.     

Actinomycetes in the Rhizosphere of Barley Grown on Acid Soddy Podzolic Soil

The study of various factors (soil acidity, the variety of barley, and their developmental phases) on the rhizosphere actinomycete complex showed that it is soil acidity that substantially influences the population of rhizosphere actinomycetes. The effect of soil acidity was most likely due to the different tolerance of rhizosphere actinomycetes to high concentrations of the aluminum and hydrogen ions. The developmental phases of barley correlated with the population indices of only one genus of actinomycetes, Micromonospora.     

Actinomycete complexes in the rhizosphere of winter rye on soddy podzolic soil

The structure of actinomycete complexes in the rhizosphere of winter rye (Secale cereale L.) varieties originating from different ecosystems and geographical zones was studied in field experiments on soddy podzolic soil. In addition to streptomycetes, the complexes studied contained actinomycetes of the genera Micromonospora and Streptosporangium, represented at high occurrence and comparable abundance rates. The rhizosphere of most of the studied rye varieties was dominated by micromonosporas. The antifungal potential of mycelial prokaryotes associated with winter rye was assessed. The taxonomic and functional structure of actinomycete complexes was shown to be similar in rye varieties originating from the nonchernozem zone of Russia. However, the actinomycete complex proved to be much different in the rye variety that developed in the steppe zone of the lower Volga region.     

Biodiversity of Streptomyces of high-mountainous ecosystems of Kyrgyzstan and its biotechnological potential

The prevalence of actinomyces of Streptomyces class in various types of soils of Kyrghyzstan and the variety of its species have been investigated. It is shown that predominant members of Streptomyces complex are in the Cinereus section of Chromogenus series which are basically adapted to chestnut and black soil while species of the section Roseus of the Fuscus series are adapted in gray, brown, and chestnut soils. Their antibiotic and growth-stimulating effect and a great opportunity of use in biotechnological process have been determined.     

Application of a method incorporating differential centrifugation for selective isolation of motile actinomycetes in soil and plant litter

The present paper describes a simple enrichment technique which enables rapid and selective isolation of diverse zoosporic actinomycete genera directly from soil and plant litter. This technique, designated the rehydration and centrifugation (RC) method, consists of immersing the air-dried source material in 10 mM phosphate buffer containing 10% soil extract, letting the preparation stand at 30 °C for 90 min, followed by centrifugation of the fluid at 1,500×g for 20 min. Portions of the supernatant containing actinomycete zoospores are plated on the humic acid-vitamin agar which is supplemented with nalidixic acid and trimethoprim as the selective inhibitors for Gram-negative bacteria and bacilli. The phosphate buffer-soil extract solution significantly promoted liberation of motile zoospores from the source material. The centrifugation stage greatly eliminated streptomycetes and other non-motile actinomycetes from the liquid phase, thereby facilitating selective growth of rare, motile actinomycetes on the isolation plates subsequent to inoculation. Ten different soil and leaf-litter samples, taken from fields, forests, and stream banks, were examined. The RC method consistently achieved preferential isolation of motile actinomycetes in all samples, which accounted for 37–86% of the total microbial population recovered. The most frequently isolated motile actinomycetes were Actinoplanes and Dactylosporangium. Strains of Actinokineospora, Catenuloplanes and Kineosporia were also recovered, depending on the nature of the samples examined. Other motile actinomycetes that were occasionally isolated in small numbers included Actinosynnema, Geodermatophilus and Sporichthya.     

Streptomyces yatensis sp. nov., a novel bioactive streptomycete isolated from a New-Caledonian ultramafic soil

The taxonomic position of an actinomycete isolated from an ultramafic soil in New Caledonia was examined using a polyphasic approach. The organism, which was designated SFOCin 76, was found to have chemical and morphological properties typical of streptomycetes and formed a distinct phyletic line in the Streptomyces violaceusniger clade of the 16S rDNA tree. It also showed a unique pattern of phenotypic properties that distinguished it from representatives of all of the validly described species classified in this clade. It is, therefore, proposed that strain SFOCin 76 be classified in the genus Streptomyces as Streptomyces yatensis sp. nov. This revised version was published online in June 2006 with corrections to the Cover Date.     

Isolation and characterization of actinomycetes antagonistic to pathogenic Vibrio spp. from nearshore marine sediments

Summary A total of 94 actinomycete strains were isolated from the marine sediments of a shrimp farm, 87.2% belonged to the genus Streptomyces, others were Micromonospora spp. Fifty-one percent of the actinomycete strains showed activity against the pathogenic Vibrio spp. strains. Thirty-eight percent of marine Streptomyces strains produced siderophores on chrome azurol S (CAS) agar plates. Seven strains of Streptomyces were found to produce siderophores and to inhibit the growth of Vibrio spp. in vitro. Two of them belonged to the Cinerogriseus group, the most frequently isolated group of Streptomyces. The results showed that streptomycetes could be a promising source for biocontrol agents in aquaculture.     

樟子松人工林营建对土壤颗粒组成变化的影响

植被恢复是退化生态系统的主要恢复措施,也是人类改善区域生态环境较为重要和直接的活动。目前,针对不同植被恢复方式对干旱半干旱地区土壤理化性质及生物特征开展了大量研究。然而,关于科尔沁沙地樟子松人工林营建对土壤颗粒组成变化的影响却鲜有报道。因此,以辽宁省章古台地区不同生长阶段(包括幼龄林、中龄林、成熟林和过熟林)的20块樟子松人工林样地为研究对象(以临近的7块天然草地为对照),研究了沙地樟子松人工林营建对0—100 cm土层土壤颗粒组成变化的影响。结果表明:沙质草地营建樟子松人工林后,不同土层土壤细颗粒(0.05 mm)含量均呈增加趋势,并且在0—10 cm层增加趋势明显,随土层深度增加土壤细颗粒增加量逐渐降低(除幼龄林外),但樟子松林地土壤颗粒组成仍以砂粒为主,土壤粘粒和粉粒含量极低(仅占5%左右)。随着樟子松人工林林龄的增加,土壤细颗粒变化量在0—10 cm层逐渐升高,而在10—100 cm层并无显著变化趋势。土壤细颗粒含量的变化在10—100 cm层与土壤含水量呈显著正相关,在0—10、20—40 cm和80—100 cm层与土壤全钾极显著负相关,在20—60 cm层与土壤有机碳呈显著正相关,在10—40 cm和80—100 cm层分别与土壤全磷呈显著正相关和负相关。综上所述,樟子松人工林营建可有效提高土壤细颗粒含量且在土壤表层效果明显,但短期内并不会使土壤颗粒组成发生显著变化,樟子松林改善土壤颗粒组成的同时也会使其他土壤因子发生相应的变化。     

Fish emulsion as a food base for rhizobacteria promoting growth of radish (Raphanus sativus L. var. sativus) in a sandy soil

Commercial fish emulsion was evaluated as a plant growth medium and as a nutrient base to enhance radish (Raphanus sativus L. var. sativus) growth by bacterial and actinomycete isolates. Six bacterial isolates including three actinomycetes were selected from a screening of 54 bacteria (including 23 actinomycetes) based on their ability to produce plant growth regulators (PGRs) and to colonize radish roots. These isolates were tested in the presence and absence of autoclaved or non-autoclaved fish emulsion or inorganic fertilizers. The nutrient contents and types and levels of PGRs in tissues of treated plants were assayed to determine the basis of growth promotion. Fish emulsion was found to support plant growth in a sandy soil as effectively as an applied inorganic fertilizer. The plant growth promotion by bacterial and actinomycete isolates was most pronounced in the presence of autoclaved or non-autoclaved fish emulsion than in the presence of the inorganic fertilizers. The bacterial and actinomycete isolates were capable of producing auxins, gibberellins and cytokinins and appeared to use fish emulsion as a source of nutrients and precursors for PGRs. PGR levels in planta following combined treatments of the bacterial and actinomycete isolates and fish emulsion were found to be significantly enhanced over other treatments. The effect of fish emulsion appears to be more related to its role as a nutrient base for the bacterial and actinomycete isolates rather than to the increased activity of the general microflora of treated soil. This is the first report of fish emulsion as a nutrient base for plant growth promoting rhizobacteria. These results also indicate that the successful treatment can be effective and economical for horticultural production in sandy soils such as those found in the United Arab Emirates where fish emulsion is already in use as a substitute or supplement for inorganic fertilizer.     

氮磷添加对内蒙古温带典型草原土壤微生物群落结构的影响

选取内蒙古温带典型草原,进行连续6a氮磷添加试验,采用土壤特征微生物PLFA生物标记技术,研究6个氮添加水平N0(0 kg N hm-2a-1)、N1(56 kg N hm-2a-1)、N2(112 kg N hm-2a-1)、N3(224 kg N hm-2a-1)、N4(392 kg N hm-2a-1)、N5(560 kg N hm-2a-1)和6个磷添加水平P0(0 kg P hm-2a-1)、P1(15.5 kg P hm-2a-1)、P2(31 kg P hm-2a-1)、P3(62 kg P hm-2a-1)、P4(93 kg P hm-2a-1)、P5(124 kg P hm-2a-1)对土壤特征微生物PLFA生物标记数量和土壤微生物群落结构的影响。结果表明:(1)随氮添加量增加,土壤微生物总磷脂脂肪酸(PLFA)含量和土壤细菌PLFA生物标记数量、放线菌PLFA生物标记数量呈上升趋势,土壤G+/G-呈增加趋势;各氮添加水平对土壤真菌PLFA生物标记数量无显著差异,随氮添加量增加,土壤真菌/细菌比降低。(2)随磷添加量增加,土壤总磷脂脂肪酸(PLFA)含量、土壤细菌PLFA生物标记数量、放线菌PLFA生物标记数量、真菌PLFA生物标记数量及真菌/细菌比值呈先上升后下降趋势,均以P3水平(62 kg P hm-2a-1)处理最高,说明适宜的磷添加对内蒙古温带典型草原土壤微生物繁殖和菌落结构有显著影响。     

沙质草地营造樟子松林后土壤容重的变化及其影响因子

采用野外调查和室内试验相结合,以辽宁省章古台地区不同生长阶段(包括幼龄林、中龄林、成熟林和过熟林)的20块樟子松人工固沙林样地(以临近的7块天然草地为对照)为研究对象,研究了沙质草地营造樟子松人工林后不同生长阶段0—100 cm土层土壤容重的变化及其影响因子。结果表明:天然沙质草地营造樟子松人工固沙林后,不同生长阶段樟子松林在0—10 cm土层土壤容重变化的变异系数为78%,其他土层变异系数范围为1.08%—4.35%。随着樟子松人工林林龄的增加,土壤容重变化量在0—20 cm和60—100 cm层逐渐降低,在20—60 cm层先降低,到37年左右后逐渐升高,过熟林较成熟林显著增大。林龄对不同土层容重变化的决定系数由大到小依次为40—60、60—80、20—40、10—20、0—10、80—100 cm层。土壤容重变化在60—80 cm层与土壤粗颗粒(粒径0.05 mm)含量、在0—10、20—40 cm和60—80 cm层与土壤全氮含量、在0—10、20—60 cm和80—100 cm层与土壤全磷含量、在20—40 cm和80—100 cm层与土壤全钾含量显著负相关,且土壤全氮和全磷含量对土壤容重的影响效果随土层深度的增加逐渐降低,土壤容重变化在10—20 cm层与土壤含水率、在20—40 cm层与土壤有机碳含量呈显著的正相关。总体上,沙质草地营造樟子松人工林可以改善土壤结构,提高土壤质量,建议采取封育禁牧等营林措施增加樟子松林下枯落物积累,提高土壤养分含量,同时对37年樟子松人工林逐渐进行更新。     

A Chitinolytic Actinomycete Complex in Chernozem Soil

A chitinolytic actinomycete complex in chernozem soil has a specific taxonomic composition, which differs from that of the actinomycete complex typically isolated on standard nutrient media containing sugars and organic acids as carbon sources. The actinomycete complex that was isolated by using nutrient media with chitin as the source of carbon and nitrogen was dominated by representatives of the genus Streptosporangium, and the actinomycete complex that was isolated by using nutrient media with sugars and organic acids as the carbon sources was dominated by representatives of the genus Streptomyces. The confirmation of the ability of actinomycetes to utilize chitin as a sole source of carbon and nitrogen came from the augmented length and biomass of the mycelium, the increased number and biomass of the actinomycete spores, the production of carbon dioxide, and the accumulation of NH₄ ⁺ ions in the culture liquid of the actinomycetes grown in the nutrient media with chitin.     

樟子松固沙林生长对土壤磷素变化的影响

磷是森林生态系统重要养分元素之一,是干旱半干旱地区植物生长的限制性因子。然而沙质草地转化为人工林生态系统后,林分的生长对沙地土壤磷素的变化及其影响机理还不清晰,为沙地合理经营和管理人工林带来了不确定性。以辽宁省章古台地区各生长阶段(幼龄林、中龄林、成熟林和过熟林阶段)的20块樟子松固沙林样地(在各生长阶段林分附近寻找1块天然草地作为对照样地)为研究对象,取样并测定样地各土层(0—10、10—20、20—40、40—60、60—80、80—100 cm)的土壤磷(全磷和速效磷)、土壤氮(全氮和速效氮)、土壤钾(全钾及速效钾)、土壤有机碳等含量以及土壤含水率、土壤pH值、土壤质地、土壤容重等因子值,并进行统计分析。结果表明:沙质草地营造樟子松人工林后,土壤全磷含量随林龄的增加而逐渐递增,成熟林时期达到最高,过熟林地全磷降低,且土壤全磷对土层深度不敏感。成熟林地的速效磷含量略高于幼林和中龄林;虽然与幼林、中龄林没有显著差异,但过熟林的土壤速效磷含量是所有林分中最低的。除了林分生长影响外,草地营造樟子松林后,土壤全磷的变化还受土壤容重和土壤速效氮含量的影响,而土壤速效磷的变化受土壤有机碳和pH...     

Experimental studies on the ecological role of antibiotic production in bacteria

Summary Genetically well-characterized strains of antibiotic-producing soil bacteria (Streptomyces griseus andStreptomyces coelicolor) were used to examine the ecological role of antibiotic production. Streptomycetes were competed against sensitive and resistantBacillus subtilis, another soil bacterium, on surface (agar) culture. The ecological role of antibiotics was examined in three levels of competition. (1) Capacity of antibiotics to allow invasion of producing organisms (B. subtilis established and streptomycetes added later). (2) Capacity of antibiotics to mediate competition between established populations (B. subtilis and streptomycetes co-inoculated). (3) Capacity of antibiotics to prevent invasion by competitors (streptomycetes established andB. subtilis added later). Antibiotic production was found to play a significant role in preventing the invasion of competitors in these experiments. Antibiotic production did not improve the ability of producers to invade a population of sensitive cells nor did it play a strong role in mediating competition between established populations. Antibiotic production also selected for antibiotic-resistant bacteria among invading competitors.     

Competing Factors of Compost Concentration and Proximity to Root Affect the Distribution of Streptomycetes

Streptomycetes are important members of soil microbial communities and are particularly active in the degradation of recalcitrant macromolecules and have been implicated in biological control of plant disease. Using a streptomycetes-specific polymerase chain reaction (PCR)-denaturing gradient gel electrophoresis (PCR-DGGE) methodology coupled with band excision and sequence analysis, we examined the effect of grape marc compost amendment to soil on cucumber plant–associated streptomycetes community composition. We observed that both compost amendment and proximity to the root surface influenced the streptomycetes community composition. A strong root selection for a soil-derived Streptomycete, most closely related to Streptomyces thermotolerans, S. iakyrus, and S. thermocarboxydus, was independent of compost amendment rate. However, while the impact of compost amendment was mitigated with increasing proximity to the root, high levels of compost amendment resulted in the detection of compost-derived species on the root surface. Conversely, in rhizosphere and non-rhizosphere soils, the community composition of streptomycetes was affected strongly even by modest compost amendment. The application of a streptomycetes-specific PCR primer set combined with DGGE analysis provided a rapid means of examining the distribution and ecology of streptomycetes in soils and plant-associated environments.     

Isolation of Endophytic Actinomycetes from Different Cultivars of Tomato and their Activities Against Ralstonia solanacearum in Vitro

The populations of endophytic actinomycetes from healthy and wilting tomato plants (tomato cultivars resistant and susceptible to Ralstonia solanacearum) grown in three different sites from Guangzhou, Guangdong Province, South China were investigated by cultivation methods. Most of the isolates belonged to streptomycetes. The Aureus group of Streptomyces was the most frequently isolated group. The population composition of Streptomyces varied according to tomato cultivars, physiological status and soil types. The proportions of antagonistic Streptomyces strains from healthy plants were higher than that from wilting plants (P < 0.05), although the difference among the proportions of antagonistic Streptomyces strains from different cultivars of healthy tomato was not significant, the similar result was found from wilting plants. No significant difference was found in the proportions of siderophere-producing Streptomyces strains from the same site (P > 0.05), but the difference was found from the different sampling sites (P < 0.05). The percentage of bacterial cell wall-degrading streptomycetes from wilting tomato was higher than that from healthy plants (P < 0.05). These results indicated that the cultivar of the host plant, physiological status and sampling sites would influence the proportion of endophytic streptomycetes with different physiological traits. Diversity of endophytic Streptomyces and their physiological diversity should be involved in developing potential biocontrol agents.     

Biosystematic studies on novel streptomycetes from soil

Members of three putatively novel Streptomyces species, designated Streptomyces groups A, B and C, were repeatedly isolated from environmental samples taken from four hay meadow plots at Cockle Park Experimental Farm, Northumberland (UK). Representative isolates were found to have properties consistent with their classification in the genus Streptomyces and were recovered in three taxa using different phenotypic criteria, namely morphological and pigmentation properties, rapid enzyme tests, and whole-organism fatty acid, protein electrophoretic and pyrolysis mass-spectrometric data. The isolates were rapidly characterised as three taxonomic groups using pyrolysis mass spectrometry. The three taxa were also distinguished from one another and from validly described species of Streptomyces using rapid enzyme tests based on the fluorophores 7-amino-methylcoumarin and 4-methylumbelliferone, and computer-assisted identification procedures. The results indicate that selective isolation and rapid characterisation of streptomycetes using pyrolysis mass spectrometry provide a practical way of determining the phenotypic species diversity of streptomycetes in natural habitats. The experimental data also indicate that representative sampling of cultivable streptomycetes from soil can best be achieved using a multi-step extraction procedure coupled with the use of selective isolation procedures.