稻瘟病抗病基因Pi15的精细定位

稻瘟病抗病基因Pi15曾被作者鉴定为与已知抗病基因Pii具有连锁关系,但是,Pii基因究竟位于染色体6还是9上存在争议.为了确定Pi15基因的染色体位置,利用分子标记在由15个抗病个体和141个感病个体组成的F2群体中,通过混合群体分离法(BSA)与隐性群体分析法(RCA)相结合的手段,对目标基因进行了连锁分析.首先,从染色体6和9分别选择10个微卫星标记进行了分析,结果表明,只有位于染色体9的RM316与目标基因连锁,重组率为(19.1±3.7)%.为了进一步确定这种连锁关系,从染色体9选择了4个序列标定位点(STS)标记进行分析,结果表明,只有G103与目标基因连锁,重组率为(5.7±2.1)%.为了获得与目标基因更加紧密连锁的分子标记,对目标基因进行了RAPD)分析.在筛选、分析了1 000个随机引物之后,从中获得了3个目标基因紧密连锁的分子标记BAPi15486、BAPi15782、BAPi15844.它们与目标基因的重组率分别为0.35%、0.35%和1.1%.这些紧密连锁的分子标记可作为分子标记辅助基因聚合和克隆的出发点.     

印度南瓜果皮和果肉颜色遗传分析及基因定位

以印度南瓜‘98-2-351’与‘06820-1’杂交构建F2群体,对亲本及各世代群体成熟果实果皮和果肉颜色进行调查、统计分析。结果表明:F2群体中果皮桔红色和灰色的分离比呈3∶1,说明果皮灰色是由单隐性基因控制;F2群体中果肉黄色和白色的分离比呈3∶1,说明果肉白色也是由单隐性基因控制。利用群体分离分析法结合隐性群体分析法,采用SSR分子标记,找到了2个与控制灰色果皮基因位点CmRc紧密连锁的SSR标记(PU078072和PU013839),其连锁遗传距离分别为5.9cM和14.5cM;同时找到了1个与控制白色果肉基因位点CmFc紧密连锁的SSR标记PU132712,其连锁遗传距离为6.7cM。本研究为进一步筛选与控制印度南瓜果皮和果肉颜色基因更加紧密连锁的分子标记及相关基因的精确定位奠定了基础。     

用PCR技术诊断水稻的白叶枯病抗性

植物育种中应用分子标记辅助选择要求分子标记与目的基因紧密连锁,而且分析手段经济简便、重复性好。Ｘａ２１是最近发现的一个具有广谱抗性的水稻白叶枯病抗性基因,利用一个含Ｘａ２１基因的品系ＩＲＢＢ２１分别与２个感病品种杂交获得２个Ｆ_２群体。用４对引物分别对３个亲本进行ＰＣＲ分析,其中一对引物（ＰＢ７８）的ＰＣＲ产物在抗、感病品种间可揭示多态性。对２个Ｆ_２群体进一步的遗传分析表明,ＰＣＲ标记和Ｘａ２１的白叶枯病抗性紧密连锁,其重组率仅为２．４８％。根据该标记选择基因型纯合的抗性植株,其准确率可达１００％。本文还就植物育种中分子标记的检测途径进行了评价。     

在DH或RIL群体中两对重叠基因控制性状的定位

在DH或RIL群体中,若只找到与两对重叠基因控制性状连锁的1个分子标记,可采用极大似然法估计控制性状的一对基因与分子标记间的重组率,并推导出重组率估计值的标准误公式。Monte Carlo模拟显示,重组率估计值的无偏性较好,其变异随时样本容量或重组率的增加而减少。     

连锁情况下自交群体遗传组成的一般表达及紧密连锁基因的选择

根据基因连锁模型推导出了计算杂交后代群体中基因型频率的数学公式,以此为基础分析了紧密连锁基因的选择策略。当Aa和Bb紧密连锁时,重组基因型在F2的频率很小,但是,随着世代的递增而迅速增大。重组基因型频率的变化与连锁强度有密切的关系。连锁越紧密,加代对提高其频率的效果就越明显。在两个位点紧密连锁的情况下,在F2代对重组类型直接进行选择很困难。推迟选择世代可以大幅度地提高选择效率。如果把选择世代由F2推迟到F3~F7,当连锁强度为5%时,选择效率可以提高到F2代的20~68倍;当连锁强度为0.5%时,选择效率可以提高到F2代的200~708倍。本文中推导出的数学公式和原理适用于任何连锁基因的选择和群体组成分析。当P=0.5时,也可以用于独立基因的遗传分析和选择。     

利用微卫星标记鉴定水稻的稻瘟病抗性

应用水稻稻瘟病抗性基因Pid(t)紧密连锁的微卫星标记RM262对含有该抗病基因的品种地谷与感病品种江南香糯和8987的杂交F2群体进行遗传分析和抗性鉴定,结果表明,RM262的PCR扩增物在抗、感品种之间的多态性较好;在2个F2群体中,RM262和抗病基因间的重组率分别为5.74%和8.17%,应用该标记的抗性纯合和杂合带型选择抗性植株,其准确率可达98%以上。此外,还就分子标记辅助育种进行了讨论。     

家蚕抗核型多角体病分子标记筛选

对家蚕抗核型多角病毒病以不同的杂交方式,构建3种近等基因系,用RAPD技术筛选出抗病主基因连锁分子标记OPA-18700和感病连锁分子标记OPY-11400。同时在F2群体中验证了抗性分子标记的有效性。     

水稻中大麦Mlo和玉米Hm1抗病基因同源序列的分析和定位

大麦抗病基因Mlo和玉米抗病基因Hm1编码的产物不具有绝大多数植物抗病基因产物所含有的保守结构域。这两个抗病基因的作用机理也不符合基因对基因学说。从水稻中分离克隆了Mlo基因的同源序列OsMlo-1和玉米Hm1基因的同源序列DFR－1。利用水稻分子标记遗传连锁图,将OsMlo-1定位于水稻第六染色体的两俱RZ667和RG424之间;Osmlo-1距离这两个分子标记分别为20．6和6．0cM(centi-Morgan)。将DFR－1定位于水稻第一染色体两个分子标记R2635和RG462之间;DFR－1距离这两个分子标记分别为11．3和23．9cM。参照已发表的水稻分子标记连锁图,发现OsMlo-1和DFR－1的染色体位点分别与两个报道的水稻抗稻瘟病数量性状位点（QTL）有较好的对应关系。结果提示,水稻中与大麦Mlo 和玉米Hml同源的基因可能也参于抗病反应的调控。     

小麦抗白粉病基因SSR标记定位

从波兰小麦与普通小麦感病品系‘中13’杂交后代中选育出小麦抗源材料WP6192,田间表现高抗白粉病,遗传分析表明其含有1对显性抗白粉病基因,暂定名为PmWP6192。用分离群体分组分析法筛选多态性SSR标记,并用F2代群体进行遗传连锁分析。结果表明,SSR标记Xgwm515、Xgwm249、Xgwm425、Xgwm372、Xg-wm630、Xbarc10、Xbarc220、Xbarc201和Xbarc353与PmWP6192基因连锁,相距最近的标记是Xbarc353,遗传距离为2.3cM。根据连锁标记所在的染色体位置,将PmWP6192定位于2AL染色体。通过基因来源分析和2AL染色体上已有抗白粉病基因的等位性分子检测,推断PmWP6192可能是1个新的抗白粉病基因。     

家蚕非滞育红卵突变体Re-nd突变基因的定位克隆

【目的】家蚕Bombyx mori非滞育红卵突变体Re-nd是唯一在非滞育状态下卵色呈现鲜红色的突变品种。本研究通过基因连锁分析和定位克隆的方法确定Re-nd的突变基因所在的染色体及紧密连锁位置,为后续Re-nd的功能研究及应用奠定基础。【方法】以家蚕卵色突变体Re-nd和野生型大造进行杂交,配制基因连锁分析群体材料和定位克隆群体材料;针对家蚕全染色体进行SNP标记开发,利用BC₁代群体材料进行基因连锁分析,确定Re-nd的突变基因所在的染色体;针对定位的Re nd的突变基因所在染色体进行SNP标记开发,利用BC₁群体材料对Re-nd的突变基因进行定位克隆。【结果】基因连锁分析结果显示Re-nd的突变表型与第6号染色体上的SNP标记完全连锁;初步定位克隆结果显示Re-nd的突变基因位于SNP标记SNP7和SNP17之间,物理距离4.04 Mb;以SNP7和SNP17之间筛选出的6个SNP标记和25个重组个体进行精细定位克隆,结果显示Re-nd的突变基因所在的区域位于SNP10和SNP12两个SNP标记之间的nscaf2853上,物理距离949.3 kb左右。【结论】将Re-nd的突变基因定位于第6号染色体的2个SNP标记SNP10和SNP12之间,物理距离约949.3 kb。本研究为后续Re-nd突变基因的精细定位及功能应用研究奠定了基础。     

A Guide to Bivariate Ideas of Quantal Response Analysis,as Applied in Biometrics and Econometrics

A review is provided of the several bivariate generalisations of quantal response analysis that have appeared in the biometric and econometric literatures. There are three main types: (i) where a binary outcome is the result of two stimulants, and thus the bivariate distribution of the thresholds for response is relevant; (ii) where three or more alternative outcomes may arise from a single stimulant; and (iii) where the response itself is bivariate (i.e., two types of response may simultaneously be observed).     

Molecular docking, 3D-QSAR,molecular dynamics,synthesis and anticancer activity of tyrosine kinase 2 (TYK 2) inhibitors

Abstract

A therapeutic rationale is proposed by selectively targeting tyrosine kinase 2 (TYK 2) to obtain potent TYK 2 inhibitors by molecular modeling studies. In the present study, we have taken tyrosine kinase (TYK 2) inhibitors and carried out molecular docking, 3?D quantitative structure–activity relationship (3D-QSAR) analysis and molecular dynamics (MD). Based on the 3D-QSAR results thirteen new compounds (R-1 to R-13) were designed and synthesized in good yields. The synthesized molecules were evaluated for their in vitro anticancer activity against LnCap and A549 cell lines. The molecules R-1, R-3, R-5, R-7, and R-10 exhibited considerable anti cancer activity.     

Pollen morphology of Xanthium L. (s.l.) (Asteraceae,Asteroideae, Heliantheae,Ambrosiinae) in the Iberian Peninsula - a palynotaxonomic approach to a poisonous,allergenic and invasive genus

Abstract

The pollen morphology of the Iberian taxa of the genus Xanthium s.l. and of the non-Iberian species X. ambrosioides was studied to help to identify these poisonous, allergenic and invasive taxa and clarify their taxonomic relationships. In addition, the question of the existence and structure of a mesoaperture in the apertural system of Xanthium was also considered. The pollen grains of sections Acanthoxanthium and Xanthium clearly differ by their characters, which supports the separation of both taxa and allows for their distinction based on pollen morphology. It is suggested that the morphological and palynological differences between Xanthium and Acanthoxanthium, together with the lack of hybridisation between the two sections and the monophyly of Acanthoxanthium, could lead to the elevation of the latter to the generic status. The two species of section Xanthium present in the Iberian Peninsula (X. orientale and X. strumarium) and of section Acanthoxanthium are well separated by their palynological features. Likewise, the Iberian subspecies of Xanthium, X. orientale subsp. orientale and X. orientale subsp. italicum are palynologically distinguishable. However, no significant difference could be found between the pollen of X. strumarium subsp. strumarium and of X. strumarium subsp. brasilicum. The pollen data do not support the hypotheses of a hybrid origin for X. strumarium subsp. brasilicum. A mesoaperture intersecting the foot layer and the upper part of the endexine is present in both sections, which is congruent with the results already found for other Asteroideae.     

Spatial distribution of benthic algae in the Gangqu River,Shangrila, China

This study consisted of sampling benthic algae at 32 sites in the Gangqu River, an important upstream tributary of the Yangtze River. Our aims were to characterize the benthic algae communities and relationships with environmental variables. Among the 162 taxa observed, Achnanthes linearis and Achnanthes lanceolata var. elliptica were the dominant species (17.10% and 14.30% of the total relative abundance, respectively). Major gradients and principal patterns of variation within the environmental variables were detected by principal component analysis (PCA). Then non-metric multidimensional scaling (NMS) divided all the sites into three groups, which were validated by multi-response permutation procedures (MRPP). Canonical correspondence analysis (CCA) indicated that three environmental variables (TN, TDS, and TP) significantly affected the distribution of benthic algae. Weighted averaging regression and cross-calibration produced strong models for predicting TN and TDS concentration, which enabled selection of algae taxa as potentially sensitive indicators of certain TN and TDS levels: for TN, Achnanthes lanceolata, Achnanthes lanceolata var. elliptica, and Cymbella ventricosa var. semicircularis; for TDS, Cocconeis placentula, Cymbella alpina var. minuta, and Fragilaria virescens. The present study represents an early step in establishing baseline conditions. Further monitoring is suggested to gain a better understanding of this region.     

Occurrence,distribution and possible sources of organochlorine pesticides in peri-urban vegetable soils of Changchun,Northeast China

The characterizations of residue levels and sources of organochlorine pesticides (OCPs) in soils are necessary to evaluate the potential pollution and risks of OCPs to the ecosystems and human health. A total of 51 surface soil samples were collected from peri-urban vegetable fields of Changchun and 13 OCPs were analyzed to learn the composition, spatial distribution and sources. The concentrations were in the ranges of 0.94–107.8 ng g^?1 for DDTs, 0.89–98.3 ng g^?1 for HCHs, 0.22–18.20 ng g^?1 for Chlordanes, nd–4.49 ng g^?1 for aldrin and nd–9.66 ng g^?1 for dieldrin, respectively. The total OCPs concentrations ranged from 2.44 to 177.1 ng g^?1 and the higher residues were mainly distributed in northeast and southwest sites, as well as sites along the Yitong River. According to the concentrations and detection frequencies, DDTs and HCHs were the most dominant compounds. Compositional analysis and principal component analysis suggested that DDT, HCH and chlordane in most soil samples derived from historical application except the slight fresh introduction at some locations. There exist a variety of OCPs residues in peri-urban vegetable soils of Changchun, but it is still safe and suitable for agricultural production for the most part, and some specific locations with high OCPs residues ought to be a cause for concern.     

Combining Material Flow Analysis,Life Cycle Assessment,and Multiattribute Utility Theory

Three assessment methods, material flow analysis (MFA), life cycle analysis (LCA), and multiattribute utility theory (MAUT) are systematically combined for supporting the choice of best end‐of‐life scenarios for polyethylene terephthalate (PET) waste in a municipality of a developing country. MFA analyzes the material and energy balance of a firm, a region, or a nation, identifying the most relevant processes; LCA evaluates multiple environmental impacts of a product or a service from cradle to grave; and MAUT allows for inclusion of other aspects along with the ecological ones in the assessment. We first systematically coupled MFA and LCA by defining “the service offered by the total PET used during one year in the region” as the functional unit. Inventory and impacts were calculated by multiplying MFA flows with LCA impacts per kilogram. We used MAUT to include social and economic aspects in the assessment. To integrate the subjective point of view of stakeholders in the MAUT, we normalized the environmental, social, and economic variables with respect to the magnitude of overall impacts or benefits in the country. The results show large benefits for recycling scenarios from all points of view and also provide information about waste treatment optimization. The combination of the three assessment methods offers a powerful integrative assessment of impacts and benefits. Further research should focus on data collection methods to easily determine relevant material flows. LCA impact factors specific to Colombia should be developed, as well as more reliable social indicators.     

Preparation, structural, magnetic and thermal properties of two heterobimetallic cyano-bridged nickel(II)-copper(II)/platinum(II) coordination polymers

Two unique bimetalic Pt(II) coordination polymers of composition [Ni(hydeten)₂Pt(CN)₄] (Ni-Pt) and [Cu(hydeten)₂Pt(CN)₄] (Cu-Pt) [hydeten = N-(2-hydroxyethyl-ethylenediamine) or 2-(2-aminoethylamino)ethanol] have been synthesized and structurally characterized by various methods in this study. The crystal structure of Cu-Pt was determined by single-crystal X-ray diffraction analysis. The structure of Cu-Pt forms of infinite 2,2-TT type [-Cu(hydeten)₂-NC-Pt(CN)₂-CN-] chains containing paramagnetic copper atoms bridged by tetracyanoplatinate species. In this complex, Cu(II) centers display an axially elongated octahedron with two chelating hydeten molecules in the equatorial positions and N-bonded bridging cyano groups in the axial positions, whereas Pt(II) centers are four coordinate with four cyanide-carbon atoms in a square-planar arrangement. The decrease of the moments of these complexes in temperature range of 50 305 K can assigned to the antiferromagnetic interactions in the structures. The thermal decomposition of Cu-Pt comprise of five distinguished stages, while the thermal decomposition of Ni-Pt take place four different stages.