基于Ti4+-IMAC富集的分枝菌酸小杆菌深度覆盖磷酸化蛋白质组研究

【目的】本研究以分枝菌酸小杆菌(Mycolicibacterium smegmatis)为研究对象,探索适于原核微生物理想的磷酸化富集方法。【方法】我们比较了二氧化钛(TiO₂)、Fe³⁺-NTA和Ti⁴⁺螯合在磷酸酯修饰的固相微球(Ti⁴⁺-IMAC) 3种不同富集方法磷酸化肽段的富集效率,并用不同分辨率的质谱仪评估富集稳定性。【结果】Ti⁴⁺-IMAC富集效率最高,磷酸化位点数是TiO₂或Fe³⁺-NTA方法的7倍以上;TiO₂和Fe³⁺-NTA方法富集到的磷酸化位点数相差不大,与已报道的用TiO₂方法富集的磷酸化位点数目接近。Ti⁴⁺-IMAC富集结果稳定性很好,高分辨率Lumos质谱仪鉴定到的磷酸化位点数是Velos的2.6倍。【结论】本研究较高效地实现了分枝菌酸小杆菌磷酸化事件的鉴定,共鉴定到2 280个磷酸化蛋白、10 880个磷酸化肽段及4 433个可信磷酸化位点,有望用于其他微生物的磷酸化蛋白质组学研究。     

Ni2+胁迫下嗜酸氧化亚铁硫杆菌亚铁氧化应激效应

【目的】嗜酸氧化亚铁硫杆菌(Acidithiobacillus ferrooxidans)作为湿法冶金的主要功能菌,其在重金属Ni²⁺胁迫下的亚铁氧化应激机制还不清楚。【方法】在两步法培养体系中,设计由低到高Ni²⁺胁迫浓度,利用分光光度法、电化学法和实时荧光定量PCR法等从宏观到微观探究Ni²⁺胁迫下A.ferrooxidans菌亚铁氧化应激效应。【结果】两步培养法体系下A.ferrooxidans菌能够耐受较高浓度的Ni²⁺毒性(≤30 g/L Ni²⁺)。当Ni²⁺胁迫浓度增加至40 g/L时,与对照组(不添加Ni²⁺胁迫)相比,A.ferrooxidans亚铁氧化率和速率显著降低(24 h的亚铁氧化抑制率约为59.4%),亚铁氧化代谢相关的rus操纵子各功能基因的表达量也显著下调,尤其是基因cyc1(最高下调了16倍)和coxBACD(4个不同亚基最高下调2.7–7.4倍);同时Fe²⁺氧化相关的胞外电子传递能力也降低,对照组(0 g/L Ni²⁺,29.0µA)最大还原峰电流值高于实验组(40 g/L Ni²⁺,24.5µA)。【结论】超高浓度Ni²⁺胁迫环境对A.ferrooxidans菌有毒性,导致该菌rus操纵子上各功能基因表达量下调,同时造成胞外电子传递速率降低,最终致使A.ferrooxidans菌亚铁氧化能力降低。研究结果将为含Ni固废高效生物浸出提供理论支持。     

大肠杆菌Zn2+敏感突变株构建及其功能验证

【背景】Zn²⁺在细胞解毒及许多生理过程中发挥着关键作用,Zn²⁺转运蛋白已逐渐引起人们的重视。在大肠杆菌中,zntA和zitB是2个外排Zn²⁺的关键基因。【目的】构建大肠杆菌Zn²⁺敏感突变株,并对其功能进行验证。【方法】以Escherichia coli DH5α为出发菌株,利用λ Red重组系统,通过携带卡那霉素抗性基因的同源重组片段敲除zntA基因。在单基因敲除菌株基础上,利用携带庆大霉素抗性基因的同源重组片段敲除zitB基因,获得一株敲除了zntA和zitB的双基因敲除菌株KZAB04。通过功能互补实验检测基因敲除菌株及对照菌株对不同浓度Zn²⁺的敏感程度。【结果】基因敲除菌株KZAB04比出发菌株E.coli DH5α具有更高的Zn²⁺敏感性。【结论】大肠杆菌Zn²⁺敏感突变株构建成功。该菌株的构建为zntA和zitB基因功能的研究提供了必要条件,同时也为其他Zn²⁺转运蛋白基因的功能鉴定与分析奠定了基础。     

锰胁迫下盐肤木锰富集及生理响应特征

为揭示盐肤木(Rhus chinensis)锰积累特征与耐受机制,该研究通过盆栽试验方法,分析0(CK)、1、5、10和20 mmol·L^-1Mn²⁺胁迫对半年生盐肤木幼苗生长、生理生化特征及其锰富集特征的影响。结果表明：(1)盐肤木在Mn²⁺浓度为0~10 mmol·L^-1条件下生长发育状况良好,且在5 mmol·L^-1Mn²⁺处理下叶片舒展,叶片颜色较深,生长最佳,而在20 mmol·L^-1Mn²⁺条件下部分叶片出现褐色斑点、萎蔫卷边的现象;随着Mn²⁺浓度的升高,盐肤木幼苗的生物量呈先升高后下降的趋势,并在5 mmol·L^-1Mn²⁺胁迫时最高。(2)随着Mn²⁺浓度的升高,盐肤木叶片中光合色素含量呈先升后降的趋势,且在Mn²⁺浓度为5 mmol·L^-1时达到峰值。(3)随着Mn²⁺浓度的升高,盐肤木幼苗叶片SOD、POD和CAT活性以及可溶性糖、可溶性蛋白、游离脯氨酸含量均呈先增加后下降的趋势,且多在Mn²⁺浓度为10 mmol·L^-1时达到峰值,而其MDA含量随着Mn²⁺浓度的升高逐渐增加。(4)随着Mn²⁺浓度的升高,盐肤木地上部和地下部锰含量及总锰含量均逐渐增加,其锰生物富集系数下降且均大于1,其转运系数则呈增加的趋势且均小于1。研究发现,盐肤木具有较强的锰富集、转运能力与锰耐受能力,属于锰根部囤积型耐重金属植物,它主要通过积累渗透调节物质、增强抗氧化酶活性以及在根部囤积锰的方式来应对锰胁迫。     

Sphingopyxis sp. YF1吸附镉的特性及其机制

【背景】水中的重金属污染是一个严峻的环境问题,严重危害人体健康,利用微生物吸附剂修复重金属污染的水体是一种高效环保的方法。Sphingopyxis能够去除重金属,但是其去除水体中镉的研究很少,且其吸附镉的机理尚不清楚。【目的】以从水体中分离的Sphingopyxis sp. YF1为对象,探究该菌对镉的吸附特性和机制。【方法】分析在不同pH、接触时间及重金属初始浓度条件下YF1活菌和死菌对Cd²⁺的吸附效果,对其进行动力学模型和等温模型拟合,通过扫描电镜和能谱(scanning electron microscopy and energy dispersive X-ray spectroscopy, SEM-EDS)观察镉在活菌和死菌细胞表面的富集,并通过傅里叶变换红外光谱(Fourier transform infrared spectroscopy, FTIR)和X射线光电子能谱(X-ray photoelectron spectroscopy, XPS)分析确定YF1菌中参与吸附Cd²⁺的官能团,阐明YF1对镉的吸附机理。【结果】当pH值为3.0-5.0时,随着pH值的升高,活菌与死菌的镉吸附量都随着增加,pH值为5.0-7.0时,活菌与死菌的镉吸附量均无较大变化,吸附主要发生在前10 min,之后吸附速率逐渐降低,活菌和死菌吸附Cd²⁺的过程更符合准二级动力学模型,表明菌体对镉主要是以化学吸附的方式进行;活菌和死菌等温模型拟合都更符合Langmuir模型,说明YF1对Cd²⁺的吸附为均相吸附;活菌和死菌对Cd²⁺的吸附量分别达到36.20 mg/g和62.98 mg/g;吸附后的活菌和死菌的细胞表面均有Cd(II)沉积在菌体表面,活菌和死菌的-OH、C-(O,N)和-NO₂等基团参与了镉的吸附。【结论】Sphingopyxis sp. YF1菌具有较强的Cd²⁺去除能力,该菌株在去除水体Cd²⁺方面具有良好的应用前景。     

大豆斑疹病菌铁摄取因子PiuB在致病性中的作用分析

铁作为生命必需的基本元素,在细菌生长代谢过程中具有重要作用。然而,大豆斑疹病菌(Xanthomonas axonopodis pv. glycines, Xag)中编码铁摄取因子的piuB基因是否参与病原菌的铁摄取和致病性并不清楚。为解析PiuB的作用,采用同源重组策略获得了Xag的piuB基因缺失突变株(ΔpiuB),并对该突变株进行功能研究。研究表明：相较于野生型,突变株ΔpiuB在寄主大豆上的毒性和生长能力显著削弱;铁载体分泌量激增;对Fe³⁺、Cu²⁺、Zn²⁺和Mn²⁺的敏感性显著增强。此外,该突变株的H₂O₂抗性、胞外多糖产量、生物膜形成能力以及游动性等相较于野生型均显著减弱;添加外源Fe³⁺不能有效恢复ΔpiuB的上述特性;功能互补株可完全恢复ΔpiuB的缺陷性表型至野生型水平。这说明PiuB是Xag摄取Fe³⁺的潜在因子,并且是Xag在寄主大豆上致病所需的。     

锰胁迫对盐肤木种子萌发、幼苗生长及理化特性的影响

为揭示植物适应锰胁迫的生理机制,通过在不同Mn²⁺浓度(0、1、5、10、15、20 mmol/L)下开展盐肤木(Rhus chinensis)种子萌发以及幼苗生长实验,检测锰胁迫处理7、15、30 d后幼苗生理生化特性的变化。结果表明:(1)随着Mn²⁺浓度的升高,盐肤木种子发芽率变化不显著,在80.0%-81.6%之间,发芽势、发芽指数和活力指数则呈先升后降的趋势;其幼苗生物量也呈现先升后降的趋势;(2)随着Mn²⁺浓度的升高与胁迫时间的延长,盐肤木幼苗叶绿素a、叶绿素b含量均呈现先增加后降低的趋势,类胡萝卜素含量呈现下降的趋势;(3)胁迫7 d时,随着Mn²⁺浓度的升高,盐肤木幼苗超氧化物歧化酶(SOD)、过氧化物酶(POD)、过氧化氢酶(CAT)活性均显著上升;胁迫15、30 d时,高Mn²⁺浓度(15-20 mmol/L)下POD、CAT活性则均降低;(4)胁迫7 d时,随着Mn²⁺浓度的升高,可溶性糖、可溶性蛋白、游离脯氨酸含量升高;胁迫15、30 d时,在Mn²⁺浓度为20 mmol/L时可溶性蛋白与游离脯氨酸含量显著降低;(5)随着Mn²⁺浓度的升高与胁迫时间的延长,丙二醛(MDA)含量均升高。研究说明盐肤木具有较强的耐受锰胁迫能力,它可通过增强抗氧化酶活性、积累渗透调节物质含量来应对锰胁迫。     

伪结核棒状杆菌感染影响巨噬细胞IL-1α表达、成熟及分泌的机制研究

【目的】伪结核棒状杆菌(Corynebacterium pseudotuberculosis,Cp)感染动物常引起内脏和体表淋巴结脓肿,以被感染部位炎性细胞因子大量增加为特征。研究Cp感染小鼠巨噬细胞对IL-1α成熟分泌的影响及机制。【方法】采用荧光定量PCR、ELISA和Western blotting等方法,首先检测Cp(ATCC19410、XH02)及其磷脂酶D基因(pld)缺失株(ATCC19410Δpld、XH02Δpld)感染巨噬细胞对IL-1α表达及成熟分泌的影响,进而以Ca²⁺螯合剂(EDTA、EGTA+Mg²⁺和BAPTA-AM)、calpain抑制剂(calpain inhibitor Ⅲ、calpain inhibitor Ⅳ和EST)处理巨噬细胞,观察对Cp感染介导IL-1α成熟分泌的影响。【结果】Cp感染巨噬细胞后,IL-1α mRNA表达及分泌显著增加,与ATCC19410、XH02感染巨噬细胞相比,ATCC19410Δpld、XH02Δpld感染细胞IL-1α表达及分泌显著下降。Cp感染引起巨噬细胞内Ca²⁺浓度显著增加,calpain活性增强,而缺失pld的Cp感染巨噬细胞内Ca²⁺浓度显著下降,calpain活性降低。EDTA、EGTA+Mg²⁺、BAPTA-AM、calpain inhibitor Ⅲ、calpain inhibitor Ⅳ处理Cp感染的巨噬细胞,巨噬细胞的IL-1α表达及分泌显著下降。【结论】Cp感染可激活巨噬细胞IL-1α表达和成熟分泌,磷脂酶D参与Cp感染巨噬细胞介导的IL-1α成熟分泌。Cp感染巨噬细胞介导IL-1α成熟与分泌与胞内Ca²⁺浓度增加、激活钙蛋白酶有关。     

异养微生物还原氧化铁的研究

所试的民养微生物能在静止状态含蔗糖和氧化铁的培养液中生长。它们在氧化蔗糖到CO₂时,伴随着Fe³⁺还原到Fe²⁺、Fe²⁺移动到基质表面与O₂接触后,又会氧化为Fe³⁺培养液Fe³⁺被还原的适宜pH和温度分别为7.0、25℃。若培养液中加入0．1％硝酸盐时,还原Fe³⁺的过程会停滞或减慢。     

海藻糖酶产生菌的选育、鉴定及其酶学特性初探

海藻糖酶可特异性将1分子海藻糖分解为2分子葡萄糖,在乙醇工业、食品等行业中具有广阔的应用前景。从环境土壤中筛选到1株海藻糖酶产生菌C2,根据形态学分析和分子生物学鉴定将其命名为大黄欧文氏菌（Erwinia rhapontici）。该菌株产海藻糖酶的最适温度为40 ℃,最适pH为5.0,在酸性及低于35 ℃条件下,该酶具有较高的稳定性,Ca²⁺、Zn²⁺、Ni²⁺、Mn²⁺、Cu²⁺、K⁺、Na⁺和Fe²⁺对海藻糖酶酶活具有促进作用,DMSO和DTT对酶活具有一定的提升作用,而Triton X-114、SDS和PMSF则对酶活具有抑制作用。     

Effects of salinity on uptake and distribution of Na+, Cl- and K+ in two wheat cultivars

Plants of two wheat (Triticum aestivum L.) cultivars differing in salt tolerance were grown in sand with nutrient solutions. 35-d-old plants were subjected to 5 levels of salinity created by adding NaCl, CaCl₂ and Na₂SO₄. Growth reduction caused by salinity was accompanied by increased Na⁺ and Cl^- concentrations, Na⁺/K⁺ ratio, and decreased concentration of K⁺. The salt tolerant cv. Kharchia 65 showed better ionic regulation. Salinity up to 15.7 dS m^-1 induced increased uptake of Na⁺ and Cl^- but higher levels of salinity were not accompanied by further increase in uptake of these ions. Observed increases in Na⁺ and Cl^- concentrations at higher salinities seemed to be the consequence of reduction in growth. Uptake of K⁺ was decreased; more in salt sensitive cultivar. This was also accompanied by differences in its distribution.     

嗜盐耐盐微生物抗盐胁迫相关离子转运蛋白研究进展

离子转运蛋白在维持细胞内pH稳态、离子动态平衡等方面发挥着重要作用。钠离子转运体和钾离子转运体在嗜盐耐盐微生物中广泛存在,其"保钾排钠"机制是微生物抗盐胁迫的两大策略之一。近年来,嗜盐耐盐微生物中许多新型钠、钾离子转运体被陆续发现,如RDD蛋白、UPF0118蛋白、DUF蛋白和KimA蛋白等;Fe³⁺、Mg²⁺等其他金属离子的转运蛋白也被证实可通过影响微生物胞内相容性溶质的合成起到渗透调节的作用。本文综述了嗜盐耐盐微生物中抗盐胁迫相关的各类离子转运蛋白,分析其分子结构和工作机理,并对这些蛋白在农业方面的应用进行了展望。继续发现新的离子转运蛋白,探究抗盐胁迫相关离子转运蛋白的结构和机理,解析各转运系统的协同作用及分子调控机制,将进一步加深对嗜盐耐盐微生物抗盐胁迫调控的认识,并为盐碱地农作物的改良等提供新的思路。     

血清钠、钾离子的均相直接测定方法研究进展

血清钠离子和钾离子的测定在临床诊断上意义重大,其常规检测方法火焰光度法和离子选择性电极法都需要昂贵的仪器且操作复杂,因此近年来开发了一些均相直接测定方法。本文综述了近年研制出的血清中钠、钾离子的各种均相直接测定方法,评述了各种直接测定方法的优、缺点。血清中钠、钾离子进行均相直接测定有着准确度高、重复性好等优点,可在临床生化自动化分析仪上应用。     

Affinity and location of an internal K+ ion binding site in shaker K channels

We have examined the interaction between TEA and K+ ions in the pore of Shaker potassium channels. We found that the ability of external TEA to antagonize block of Shaker channels by internal TEA depended on internal K+ ions. In contrast, this antagonism was independent of external K+ concentrations between 0.2 and 40 mM. The external TEA antagonism of internal TEA block increased linearly with the concentration of internal K+ ions. In addition, block by external TEA was significantly enhanced by increases in the internal K+ concentration. These results suggested that external TEA ions do not directly antagonize internal TEA, but rather promote increased occupancy of an internal K+ site by inhibiting the emptying of that site to the external side of the pore. We found this mechanism to be quantitatively consistent with the results and revealed an intrinsic affinity of the site for K+ ions near 65 mM located approximately 7% into the membrane electric field from the internal end of the pore. We also found that the voltage dependence of block by internal TEA was influenced by internal K+ ions. The TEA site (at 0 internal K+) appeared to sense approximately 5% of the field from the internal end of the pore (essentially colocalized with the internal K+ site). These results lead to a refined picture of the number and location of ion binding sites at the inner end of the pore in Shaker K channels.     

Application of hybrid SiO2‐coated CdTe nanocrystals for sensitive sensing of Cu2+ and Ag+ ions

A new ion sensor based on hybrid SiO₂‐coated CdTe nanocrystals (NCs) was prepared and applied for sensitive sensing of Cu²⁺ and Ag⁺ for the selective quenching of photoluminescence (PL) of NCs in the presence of ions. As shown by ion detection experiments conducted in pure water rather than buffer solution, PL responses of NCs were linearly proportional to concentrations of Cu²⁺ and Ag⁺ ions < 3 and 7 uM, respectively. Much lower detection limits of 42.37 nM for Cu²⁺ and 39.40 nM for Ag⁺ were also observed. In addition, the NC quenching mechanism was discussed in terms of the characterization of static and transient optical spectra. The transfer and trapping of photoinduced charges in NCs by surface energy levels of CuS and Ag₂S clusters as well as surface defects generated by the exchange of Cu²⁺ and Ag⁺ ions with Cd²⁺ ion in NCs, resulted in PL quenching and other optical spectra changes, including steady‐state absorption and transient PL spectra. It is our hope that these results will be helpful in the future preparation of new ion sensors. Copyright © 2012 John Wiley & Sons, Ltd.     

Logistics of water and salt transport through the plant: structure and functioning of the xylem

The xylem is a long‐distance transport system that is unique to higher plants. It evolved into a very sophisticated plumbing system ensuring controlled loading/unloading of ions and water and their effective translocation to the required sinks. The focus of this overview will be the intrinsic inter‐relations between structural and functional features of the xylem. Taken together the xylem is designed to prevent cavitation (entry of air bubbles), induced by negative pressures under transpiration and to repair the cavitated vessels. Half‐bordered pits between xylem parenchyma cells and xylem vessels are on the one hand the gates to the vessels but on the other hand a serious ‘bottle‐neck’ for transport. Hence it becomes evident that special transport systems exist at the interface between the cells and vessels, which allow intensive fluxes of ions and water to and out of the xylem. The molecular identification and biophysical/biochemical characterization of these transporters has just started. Paradigms for the sophisticated mechanism of controlled xylem transport under changing environmental conditions are SKOR, a Shaker‐like channel involved in K⁺‐loading and SOS1, a Na⁺/H⁺ antiporter with a proposed dual function in Na⁺ transport. In view of the importance of plant water relations it is not surprising to find that water channels dominate the gate of access to xylem. Future studies will focus on the mechanism(s) that regulate water channels and ion transporters and on their physiological role in, for example, the repair of embolism. Clearly, progress in this specific field of research will greatly benefit from an integration of molecular and biophysical techniques aimed to understand ‘whole‐plant’ behaviour under the ever‐changing environmental conditions in the daily life of all plants.     

High Capacity Adsorption—Dominated Potassium and Sodium Ion Storage in Activated Crumpled Graphene

Structurally and chemically defective activated‐crumbled graphene (A‐CG) is employed to achieve unique synergy of large reversible potassium (K) and sodium (Na) ion storage capacity with fast charging and extended cyclability. A‐CG synthesis consists of low temperature spraying of graphene oxide slurry, followed by partial reduction annealing and air activation. For K storage, the reversible capacities are 340 mAh g^?1 at 0.04 A g^?1, 261 mAh g^?1 at 0.5 A g^?1, and 210 mAh g^?1 at 2 A g^?1. For Na storage, the reversible capacities are 280 mAh g^?1 at 0.04 A g^?1, 191 mAh g^?1 at 0.5 A g^?1, and 151 mAh g^?1 at 2 A g^?1. A‐CG shows a stable intermediate rate (0.5 Ag^?1) cycling with both K and Na, with minimal fade after 2800 and 8000 cycles. These are among the most favorable capacity—rate capability—cyclability combinations recorded for potassium‐ion battery and sodium‐ion battery carbons. Electroanalytical studies (cyclic voltammetry, galvanostatic intermittent titration technique, b‐value) and density functional theory (DFT) reveal that enhanced electrochemical performance originates from ion adsorption at various defects, such as Stone–Wales defects. Moreover, DFT highlights enhanced thermodynamic stability of A‐CG with adsorbed K versus with adsorbed Na, explaining the unexpected higher reversible capacity with the former.     

Design and Performance of Rechargeable Sodium Ion Batteries,and Symmetrical Li‐Ion Batteries with Supercapacitor‐Like Power Density Based upon Polyoxovanadates

The polyanion Li₇V₁₅O₃₆(CO₃) is a nanosized molecular cluster (≈1 nm in size), that has the potential to form an open host framework with a higher surface‐to‐bulk ratio than conventional transition metal oxide electrode materials. Herein, practical rechargeable Na‐ion batteries and symmetric Li‐ion batteries are demonstrated based on the polyoxovanadate Li₇V₁₅O₃₆(CO₃). The vanadium centers in {V₁₅O₃₆(CO₃)} do not all have the same V^IV/V redox potentials, which permits symmetric devices to be created from this material that exhibit battery‐like energy density and supercapacitor‐like power density. An ultrahigh specific power of 51.5 kW kg^?1 at 100 A g^?1 and a specific energy of 125 W h kg^?1 can be achieved, along with a long cycling life (>500 cycles). Moreover, electrochemical and theoretical studies reveal that {V₁₅O₃₆(CO₃)} also allows the transport of large cations, like Na⁺, and that it can serve as the cathode material for rechargeable Na‐ion batteries with a high specific capacity of 240 mA h g^?1 and a specific energy of 390 W h kg^?1 for the full Na‐ion battery. Finally, the polyoxometalate material from these electrochemical energy storage devices can be easily extracted from spent electrodes by simple treatment with water, providing a potential route to recycling of the redox active material.