Contrasting effects of mosaic structure on alpha and beta diversity of bird assemblages in a human‐modified landscape

Habitat loss and fragmentation are key processes causing biodiversity loss in human‐modified landscapes. Knowledge of these processes has largely been derived from measuring biodiversity at the scale of ‘within‐habitat’ fragments with the surrounding landscape considered as matrix. Yet, the loss of variation in species assemblages ‘among’ habitat fragments (landscape‐scale) may be as important a driver of biodiversity loss as the loss of diversity ‘within’ habitat fragments (local‐scale). We tested the hypothesis that heterogeneity in vegetation cover is important for maintaining alpha and beta diversity in human‐modified landscapes. We surveyed bird assemblages in eighty 300‐m‐long transects nested within twenty 1‐km² vegetation ‘mosaics’, with mosaics assigned to four categories defined by the cover extent and configuration of native eucalypt forest and exotic pine plantation. We examined bird assemblages at two spatial scales: 1) within and among transects, and 2) within and among mosaics. Alpha diversity was the mean species diversity within‐transects or within‐mosaics and beta diversity quantified the effective number of compositionally distinct transects or mosaics. We found that within‐transect alpha diversity was highest in vegetation mosaics defined by continuous eucalypt forest, lowest in mosaics of continuous pine plantation, and at intermediate levels in mosaics containing eucalypt patches in a pine matrix. We found that eucalypt mosaics had lower beta diversity than other mosaic types when ignoring relative abundances, but had similar or higher beta diversity when weighting with species abundances. Mosaics containing both pine and eucalypt forest differed in their bird compositional variation among transects, despite sharing a similar suite of species. This configuration effect at the mosaic scale reflected differences in vegetation composition among transects. Maintaining heterogeneity in vegetation cover could help to maintain variation among bird assemblages across landscapes, thus partially offsetting local‐scale diversity losses due to fragmentation. Critical to this is the retention of remnant native vegetation.     

Bird Assemblages in Anthropogenic Habitats: Identifying a Suitability Gradient for Native Species in the Atlantic Forest

Traditional approaches to the study of species persistence in fragmented landscapes generally consider a binary classification of habitat being suitable or unsuitable; however, the range of human‐modified habitats within a region may offer a gradient of habitat suitability (or conservation value) for species. We identified such a gradient by comparing bird assemblages among contrasting land uses (pine plantations of different age, annual crops, clear cuts and cattle pastures) in the Upper Parana Atlantic forest. Bird assemblages and vegetation structure were characterized in an extensive area of 4400 km² in Argentina and Paraguay during the breeding seasons of 2005–2010. Similarity of bird assemblages between anthropogenic habitats and the native forest and the proportion of forest species increased with vegetation vertical structure, while the proportion of open‐area species decreased. As a consequence, mature tree plantations were the most suitable habitats for forest species and were mainly used by frugivores and bark insectivores. In contrast, open habitats were the least suitable habitat for forest species and were used primarily by insectivores. Human‐created habitats that are structurally complex can be used by a subset of forest species, and may improve functional connectivity and mitigate edge effects. The conservation of large tracks of native forests, however, is critical for the long‐term persistence of the entire bird assemblage, especially for native forest dependent species.     

Independent effects of habitat loss,habitat fragmentation and structural connectivity on forest‐dependent birds

Aim Habitat loss and fragmentation are amongst the greatest threats to biodiversity world‐wide. However, there is still little evidence on the relative influence of these two distinct processes on biodiversity, and no study, to date, has investigated the independent contribution of structural connectivity in addition to habitat loss and fragmentation. The aim of this study is to evaluate the independent effects of habitat loss (the decrease in total amount of habitat), habitat fragmentation per se (habitat subdivision) and structural connectivity (in the form of hedgerow networks) on the distribution of seven resident forest‐dependent birds in central Italy. Location Central Italy. Methods We strategically selected 30 landscapes (each of 16 km² in size) with decreasing total amount of forest cover and with contrasting configuration of patches and contrasting lengths of hedgerow networks. Presence/absence of birds in each landscape unit was studied through point counts. Results The amount of forest cover in the landscape had the strongest relative influence on birds’ occupancy, whilst habitat subdivision played a negligible role. Structural connectivity and the geographic position of the landscape unit played a relatively important role for four species. Main conclusions Our study shows the importance of disentangling the contribution of different landscape properties in determining distribution patterns. Our results are consistent with the fact that halting habitat loss and carrying out habitat restoration should be conservation priorities, since habitat loss is the main factor affecting the distribution of the target species; implementation of structural connectivity through hedgerows, instead, should be evaluated with caution since its contribution is secondary to the predominant role of habitat loss.     

Ranging Behavior of an Arboreal Marsupial in a Plantation Landscape

Forests are becoming increasingly fragmented, primarily because of their conversion to production landscapes. Animals occupying modified landscapes may need to expand their ranges and move longer distances between remnant forest patches to find resources. The establishment of plantations in fragmented landscapes, however, may provide complementary habitat for wildlife and improve connectivity, reducing the amount of movement required. Our objective was to determine the influence of plantations on koala (Phascolarctos cinereus) habitat use and test 2 competing hypotheses on the relationship between plantations and range size. We deployed global positioning system and very high frequency collars on 40 koalas in 2 landscapes (plantation and non-plantation) in Victoria, Australia. From 68,216 tracking points collected over an 8-month period, we calculated and compared seasonal home range size and habitat use between landscapes. There was no difference in range size, the size and number of core use areas, or the distance between core use areas between plantation and non-plantation landscapes. Plantations extend existing koala habitat and facilitate koala movement through a landscape; however, remnant native vegetation is still more frequently used. Consequently, native vegetation (even fragmented, linear roadside vegetation) is of high conservation importance for the persistence of koalas in modified landscapes. © 2020 The Wildlife Society.     

Differing responses to landscape change: implications for small mammal assemblages in forest fragments

Human modification of landscapes typically results in many species being confined to small, isolated and degraded habitat fragments. While fragment size and isolation underpin many studies of modified landscapes, vegetation characteristics are less frequently incorporated. The relative influence of biogeographic (e.g. size, isolation) and vegetation parameters on assemblages is poorly understood, but critical for conservation management. In this study, a multiple hypothesis testing framework was used to determine the relative importance of biogeographic and vegetation parameters in explaining the occurrence of an assemblage of small mammals in 48 forest fragments in an agricultural landscape in south-eastern Australia. Fragment size and vegetation characteristics were consistently important predictors of occurrence across species. In contrast, fragment isolation was important for just one native species. Differing abilities of species to move through the landscape provide a reasonable explanation for these results. We conclude that for effective conservation of assemblages, it is important to: (1) consider differing responses of species to landscape change, and (2) move beyond a focus primarily on spatial attributes (size, isolation) to recognise that landscape change also has profound effects on habitat composition and quality.     

Site vegetation characteristics are more important than landscape context in determining bird assemblages in revegetation

The effectiveness of revegetation in providing habitat for fauna is expected to be determined both by within‐site factors and attributes of the landscape in which a revegetation site occurs. Most studies of fauna in revegetation have been conducted in landscapes that have been extensively cleared, modified or fragmented, and in Australia, predominantly in the southern temperate zone. We investigated how within‐site vegetation attributes and landscape context attributes were related to bird species richness and composition in a chronosequence of post‐mining rehabilitation sites within an otherwise intact landscape in tropical northern Australia. Our working hypothesis was that bird species richness in rehabilitating sites would be positively related to site vegetation structure and landscape context including (1) proximity to woodland and (2) the proportion of woodland within a 500‐m buffer of rehabilitation sites. Within each of 67 sites, we sampled vegetation once and surveyed for birds eight times over 16 months. Landscape context variables were calculated using GIS. There were large differences between bird assemblages of woodland and rehabilitation sites and between age classes of rehabilitation. Bird assemblages were strongly related to site vegetation attributes across all rehabilitation sites. Proximity to woodland was only related to bird assemblages in rehabilitation sites older than 4 years old. We conclude that the relative importance of landscape context and site variables at any point in time will be a function of how closely vegetation within the revegetation site matches the habitat resource requirements of individual species.     

Persistence at distributional edges: Columbia spotted frog habitat in the arid Great Basin,USA

A common challenge in the conservation of broadly distributed, yet imperiled species is understanding which factors facilitate persistence at distributional edges, locations where populations are often vulnerable to extirpation due to changes in climate, land use, or distributions of other species. For Columbia spotted frogs (Rana luteiventris) in the Great Basin (USA), a genetically distinct population segment of conservation concern, we approached this problem by examining (1) landscape‐scale habitat availability and distribution, (2) water body‐scale habitat associations, and (3) resource management‐identified threats to persistence. We found that areas with perennial aquatic habitat and suitable climate are extremely limited in the southern portion of the species’ range. Within these suitable areas, native and non‐native predators (trout and American bullfrogs [Lithobates catesbeianus]) are widespread and may further limit habitat availability in upper‐ and lower‐elevation areas, respectively. At the water body scale, spotted frog occupancy was associated with deeper sites containing abundant emergent vegetation and nontrout fish species. Streams with American beaver (Castor canadensis) frequently had these structural characteristics and were significantly more likely to be occupied than ponds, lakes, streams without beaver, or streams with inactive beaver ponds, highlighting the importance of active manipulation of stream environments by beaver. Native and non‐native trout reduced the likelihood of spotted frog occupancy, especially where emergent vegetation cover was sparse. Intensive livestock grazing, low aquatic connectivity, and ephemeral hydroperiods were also negatively associated with spotted frog occupancy. We conclude that persistence of this species at the arid end of its range has been largely facilitated by habitat stability (i.e., permanent hydroperiod), connectivity, predator‐free refugia, and a commensalistic interaction with an ecosystem engineer. Beaver‐induced changes to habitat quality, stability, and connectivity may increase spotted frog population resistance and resilience to seasonal drought, grazing, non‐native predators, and climate change, factors which threaten local or regional persistence.     

Movement and phenology of bees in a subtropical Australian agricultural landscape

Bees are mobile organisms that seek food and nesting opportunities from a range of habitats. It is important to understand the way they move in agricultural landscapes if we are to conserve them and benefit from their activity as pollinators. We surveyed bees using directional flight interception (Malaise) traps over a 1‐year period in two agricultural landscapes in south‐east Queensland, Australia. We placed traps at the ecotone between crops and remnant vegetation to establish the pattern of movement between these habitats. Species richness in these landscapes (70) was high relative to that in comparable studies. Some bees were active year round, but most were caught in the period September to March. Across the whole assemblage there was a significant pattern where more species were detected leaving rather than entering remnant vegetation. The same bias was true for the number of individuals of the two most abundant species (Homalictus urbanus and Apis mellifera). Species exclusively found in crops were smaller on average (and therefore have smaller foraging range) than their non‐crop counterparts. Together, these patterns indicate that while bees are abundant in crop habitat, the remnant vegetation is important as the point of origin for bee movements, and the riparian remnant in particular is richer than the dry native remnant. Compositional similarity among samples was significantly explained by landscape but also movement direction (i.e. to or from the riparian remnant) because different species showed different patterns of response. The landscape with greater native vegetation cover supported more species in and around crops than the landscape with less native vegetation.     

The relative influence of in situ and neighborhood factors on reptile recolonization in post‐mining restoration sites

Restoration can be important in slowing, or reducing, rates of biodiversity loss, but needs to consider the factors influencing fauna recolonization as part of the recovery process. Although many studies of factors influencing faunal recolonization have examined the influence of in situ site factors, fewer have examined the influence of neighborhood landscape factors, especially in landscapes with permeable matrices. To assess the relative influence of landscape and site factors on reptile recolonization in a production landscape with a permeable matrix, we surveyed reptiles at intact reference sites and post‐mining restoration sites (3–20 years post‐mining [YPM]) in a forest ecosystem in southwestern Australia. Reptile assemblages in restoration sites never converged on those in reference habitat. Reptile species composition and individual species abundances (>20 detections) in restoration sites were primarily influenced by site factors such as canopy height, litter cover, and coarse woody debris volume, and not by landscape factors. We suggest that the most common reptile species in our study area are primarily influenced by site factors, not landscape factors, and most reptiles detected in restoration sites were present by 3–4 YPM. Therefore, it is likely that habitat suitability is the main barrier to most species' recolonization of restoration sites in landscapes with permeable matrices. Management should continue to focus on restoring microhabitats and vegetation structure, which is similar to reference habitat to promote recolonization of restoration sites by reptiles.     

Disentangling the effects of historic vs. contemporary landscape structure on population genetic divergence

Increasing habitat fragmentation poses an immediate threat to population viability, as gene flow patterns are changed in these altered landscapes. Patterns of genetic divergence can potentially reveal the impact of these shifts in landscape connectivity. However, divergence patterns not only carry the signature of altered contemporary landscapes, but also historical ones. When considered separately, both recent and historical landscape structure appear to significantly affect connectivity among 51 wood frog ( Rana sylvatica ) populations. However, by controlling for correlations among landscape structure from multiple time periods, we show that patterns of genetic divergence reflect recent landscape structure as opposed to landscape structure prior to European settlement of the region (before 1850s). At the same time, within-population genetic diversities remain high and a genetic signature of population bottlenecks is lacking. Together, these results suggest that metapopulation processes – not drift-induced divergence associated with strong demographic bottlenecks following habitat loss – underlie the strikingly rapid consequences of temporally shifting landscape structure on these amphibians. We discuss the implications of these results in the context of understanding the role of population demography in the adaptive variation observed in wood frog populations.     

Understanding the genetic effects of recent habitat fragmentation in the context of evolutionary history: phylogeography and landscape genetics of a southern California endemic Jerusalem cricket (Orthoptera: Stenopelmatidae: Stenopelmatus)

Habitat loss and fragmentation due to urbanization are the most pervasive threats to biodiversity in southern California. Loss of habitat and fragmentation can lower migration rates and genetic connectivity among remaining populations of native species, reducing genetic variability and increasing extinction risk. However, it may be difficult to separate the effects of recent anthropogenic fragmentation from the genetic signature of prehistoric fragmentation due to previous natural geological and climatic changes. To address these challenges, we examined the phylogenetic and population genetic structure of a flightless insect endemic to cismontane southern California, Stenopelmatus'mahogani' (Orthoptera: Stenopelmatidae). Analyses of mitochondrial DNA sequence data suggest that diversification across southern California began during the Pleistocene, with most haplotypes currently restricted to a single population. Patterns of genetic divergence correlate with contemporary urbanization, even after correcting for (geographical information system) GIS-based reconstructions of fragmentation during the Pleistocene. Theoretical simulations confirm that contemporary patterns of genetic structure could be produced by recent urban fragmentation using biologically reasonable assumptions about model parameters. Diversity within populations was positively correlated with current fragment size, but not prehistoric fragment size, suggesting that the effects of increased drift following anthropogenic fragmentation are already being seen. Loss of genetic connectivity and diversity can hinder a population's ability to adapt to ecological perturbations commonly associated with urbanization, such as habitat degradation, climatic changes and introduced species. Consequently, our results underscore the importance of preserving and restoring landscape connectivity for long-term persistence of low vagility native species.     

Associations between wasp communities and forest structure: Do strong local patterns hold across landscapes?

Abstract Forest structure and habitat complexity have been used extensively to predict the distribution and abundance of insect assemblages in forest ecosystems. We tested empirically derived predictions of strong, consistent relationships between wasp assemblages and habitat complexity, using both field assessments and vegetation indices from remote sensing as measures of habitat complexity. Wasp samples from 26 paired ‘high and low’ complexity sites in two forests approximately 70 km apart, were compared with normalized difference vegetation indices (NDVIs) derived from multispectral videography of the survey sites. We describe a strong unequivocal link between habitat complexity and wasp communities, the patterns holding over coarse and fine landscape scales. NDVIs were also excellent predictors of habitat complexity and hence wasp community patterns. Sites with greater NDVIs consistently supported a greater abundance and species richness, and a different composition of wasps to sites with low NDVIs. Using vegetation indices from remote sensing to gauge habitat complexity has significant potential for ecosystem modelling and rapid biodiversity assessment.     

Impacts of an invasive willow (Salix × rubens) on riparian bird assemblages in south‐eastern Australia

We explored how a woody plant invader affected riparian bird assemblages. We surveyed 15 200‐m‐long transects in riparian zones in a much‐changed landscape of eastern Victoria, Australia. Abundance, species‐richness, foraging‐guild richness and composition of birds were compared in transects in three habitat types: (i) riparian zones dominated by the invasive willow Salix × rubens; (ii) riparian zones lined with native woody species; and (iii) riparian zones cleared of almost all woody vegetation. We also measured abundance and richness of arthropods and habitat structure to explore further the effects of food resources and habitat on the avifauna. We observed 67 bird species from 14 foraging guilds. Native riparian transects had more birds, bird species and foraging guilds than willow‐invaded or cleared transects. Habitat complexity increased from cleared to willow‐invaded to native riparian transects, as did abundance of native and woodland‐dependent birds. Native shrub and trees species had more foliage and branch‐associated arthropods than did willows, consistent with a greater abundance and variety of foraging guilds of birds dependent on this resource. Willow spread into cleared areas is unlikely to facilitate greatly native bird abundance and diversity even though habitat complexity is increased. Willow invasion into the native riparian zone, by decreasing food resources and altering habitat, is likely to reduce native bird biodiversity and further disrupt connectivity of the riparian zone.     

Fragmentation gradients differentially affect the species range distributions of four taxonomic groups in semi‐deciduous Atlantic forest

Human activities often cause habitat fragmentation and how forest fragments affect species range distributions has implications for ecology and conservation. However, few studies have considered communities within the same landscape. Here, we analyzed metacommunity structure to determine the range distributions for species in four taxonomic groups (amphibians, birds, social wasps, and trees) in a patchy landscape of semi‐deciduous Atlantic forest in southwestern Brazil. Although trees are a key component of the environment for animals in forested patches, the ranges of bird, wasp, and amphibian species did not change in concert with the species ranges of trees. The species ranges of amphibians and social wasps were unaffected by fragmentation gradients and exhibited independent distribution patterns (i.e., random structure). In contrast, birds and trees exhibited range turnover along different fragmentation gradients, indicating that species show idiosyncratic responses to abiotic factors (i.e., Gleasonian structure). For birds, some less‐resilient species occurred only in fragments with a large area of native vegetation at a radius of 5 km from the center of the sampled forest fragments, whereas other more stress‐tolerant species occurred only in sites with small areas of native vegetation. For trees, some later succession species (e.g., animal‐dispersed seeds) occurred only in fragments with high connectivity, whereas earlier‐recruiting species (e.g., wind‐dispersed seeds) occurred in fragments with low connectivity. Thus, determining the effects of human‐modified landscapes on species range distributions, even within the same landscape, might not be a trivial task.     

Geographic gradients of deforestation and mammalian communities in a fragmented, temperate rain forest landscape

Aim We studied the temporal and spatial patterns in deforestation and community structure of mammals in a fragmented old‐growth, temperate rain forest to test the hypothesis that anthropogenic habitat conversion advances in a nonrandom manner across native landscapes, and that its effects on ecological communities are both persistent and predictable. Location The location is the Hood Canal district of Olympic National Forest, Washington, USA. Results Deforestation followed the apparently general pattern observed for deforestation of tropical rain forests and other native landscapes, advancing first along low and relatively level valleys, then to areas at higher elevations and along steeper slopes, and eventually to sites more distant from those of initial land conversion and transportation centres. Mammal surveys within this area indicated that this nonrandom advance of deforestation has created relatively steep geographical and topographic gradients in both local and landscape‐level factors and, ultimately, in the structure of mammalian communities. Conclusion The close and likely causal relationship between anthropogenic habitat loss and the ecological dynamics of mammalian communities and dependent species (e.g. spotted owls) indicates that our abilities to understand and eventually reduce the current extinction crisis may rely heavily on our understanding of, and abilities to modify, the manner in which we expand across and transform native landscapes.     

Black box and attics: Habitat selection and resource use by large threatened pythons in landscapes with contrasting human modification

Woodland and forest degradation, driven predominately by agricultural and pastoral production, is a crisis facing many species globally, in particular hollow‐dependent fauna. Large predatory species play important roles in both ecosystems and conservation strategies, but few studies have examined habitat selection of such species in intensively human‐modified landscapes. We quantified habitat selection and resource use by a large, top‐order and threatened snake (carpet python, Morelia spilota), between adjacent areas of high and low anthropogenic modification in inland Australia, a region that has undergone considerable alteration since European settlement. At the low‐impact site, snakes preferred tree hollows and a structurally complex understorey, whereas at the high‐impact site, snakes preferred homestead attics. Based on the decline of the species in this region, however, high‐impact landscapes may only support snakes when they are adjacent to low‐impact habitats. Invasive species comprised a large part of snake diets in both landscape types. Carpet pythons, with large home ranges and habitat requirements that overlap with many smaller threatened mammalian and avian fauna, are generally well liked and easily identifiable by rural landholders. Accordingly, they may play a key role in conservation strategies aimed at the protection of woodland and hollow‐dependent fauna in heavily modified landscapes of Australia's inland regions. However, invasive species, which tend to contribute to declines in native species inhabiting arid and semi‐arid Australia, are beneficial and important to pythons. Our study therefore highlights the diversity of effects that two major threats to biodiversity – habitat loss and invasive species – can have on different species within the same ecosystem.     

Assessing the importance of individual habitat patches as irreplaceable connecting elements: An analysis of simulated and real landscape data

Habitat loss and fragmentation are considered to be severe threats to biodiversity, and maintaining natural levels of landscape connectivity may be one of the best responses to these issues. Graph-based habitat availability (reachability) metrics have been shown to be an appropriate method for a multifaceted but coherent landscape connectivity assessment. These metrics can be partitioned into three commensurate fractions (intra, flux, connector) that quantify the different ways in which habitat patches contribute to the overall landscape connectivity and habitat availability. In particular, the connector fraction measures the contribution of patches to the connectivity between other habitat areas as irreplaceable connecting elements or stepping stones. Because many conservation efforts and initiatives are focused on conserving or restoring corridors and other linkages between habitat areas, it is critical to understand more thoroughly the conditions under which investing in these connecting elements is an efficient management strategy. For this purpose, we analysed the contribution of the connector fraction in different simulated habitat patterns under different levels of habitat amount and fragmentation and in natural habitats for endangered forest bird species in Catalonia (Spain). We show that a prominent role of individual stepping stone patches as irreplaceable providers of habitat connectivity and availability arises only under a relatively narrow set of conditions, characterised by low habitat amount, high habitat fragmentation and modest to intermediate species dispersal abilities. We suggest that to support connectivity-related investments, it is necessary to focus on those few species or dispersal distance ranges that are likely to be both most dependent on and most benefited by the conservation or restoration of stepping stone patches. We conclude that the total amount of reachable habitat for a particular species is rarely determined by the contribution of individual connectors as the only dominant factor. Therefore, conservationists should be cautious not to overemphasise the importance of connectivity investments and to balance them with other conservation alternatives and strategies to promote species conservation in heterogeneous landscapes.     

Pervasive effects of dispersal limitation on within- and among-community species richness in agricultural landscapes

Aim To determine whether the effect of habitat fragmentation and habitat heterogeneity on species richness at different spatial scales depends on the dispersal ability of the species assemblages and if this results in nested species assemblages. Location Agricultural landscapes distributed over seven temperate Europe countries covering a range from France to Estonia. Methods We sampled 16 local communities in each of 24 agricultural landscapes (16 km²) that differ in the amount and heterogeneity of semi‐natural habitat patches. Carabid beetles were used as model organisms as dispersal ability can easily be assessed on morphological traits. The proximity and heterogeneity of semi‐natural patches within the landscape were related to average local (alpha), between local (beta) and landscape (gamma) species richness and compared among four guilds that differ in dispersal ability. Results For species assemblages with low dispersal ability, local diversity increased as the proximity of semi‐natural habitat increased, while mobile species showed an opposite trend. Beta diversity decreased equally for all dispersal classes in relation to proximity, suggesting a homogenizing effect of increased patch isolation. In contrast, habitat diversity of the semi‐natural patches affected beta diversity positively only for less mobile species, probably due to the low dispersal ability of specialist species. Species with low mobility that persisted in highly fragmented landscapes were consistently present in less fragmented ones, resulting in nested assemblages for this mobility class only. Main conclusions The incorporation of dispersal ability reveals that only local species assemblages with low dispersal ability show a decrease of richness as a result of fragmentation. This local species loss is compensated at least in part by an increase in species with high dispersal ability, which obscures the effect of fragmentation when investigated across dispersal groups. Conversely, fragmentation homogenizes the landscape fauna for all dispersal groups, which indicates the invasion of non‐crop habitats by similar good dispersers across the whole landscape. Given that recolonization of low dispersers is unlikely, depletion of these species in modern agricultural landscapes appears temporally pervasive.     

Determinants of fine‐scale homogenization and differentiation of native freshwater fish faunas in a Mediterranean Basin: implications for conservation

Aim Increasing threats to freshwater biodiversity are rapidly changing the distinctiveness of regional species pools and local assemblages. Biotic homogenization/differentiation processes are threatening the integrity and persistence of native biodiversity patterns at a range of spatial scales and pose a challenge for effective conservation planning. Here, we evaluate the extent and determinants of fine‐scale alteration in native freshwater fish assemblages among stream reaches throughout a large river basin and consider the implications of these changes for the long‐term conservation of native fishes. Location Guadiana River basin (South‐Western Iberian Peninsula). Methods We quantified the magnitude of change in compositional similarity between observed and reference assemblages and its potential effect on natural patterns of compositional distinctiveness. Reference assemblages were defined as the native species expected to occur naturally (in absence of anthropogenic alterations) and were reconstructed using a multivariate adaptive regression splines predictive model. We also evaluated the role of habitat degradation and introduced species as determinants of biotic homogenization/differentiation. Results We found a significant trend towards homogenization for native fish assemblages. Changes in native fish distributions led to the loss of distinctiveness patterns along natural environmental gradients. Introduced species were the most important factor explaining the homogenization process. Homogenization of native assemblages was stronger in areas close to reservoirs and in lowland reaches where introduced species were more abundant. Main conclusions The implementation of efficient conservation for the maintenance of native fish diversity is seriously threatened by the homogenization processes. The identification of priority areas for conservation is hindered by the fact that the most diverse communities are vanishing, which would require the selection of broader areas to adequately protect all the species. Given the principal role that introduced species play in the homogenization process and their relation with reservoirs, special attention must be paid to mitigating or preventing these threats.