Physiological relationship between the temperate phages lambda and phi80

Summary This work deals with the ability of phage 80 to provide defective mutants of with their missing functions. Functions Involved in Recombination. As shown by others, the Int mechanism of 80 cannot excise prophage . However, 80 efficiently excises recombinants from tandem dilysogens, using its Ter mechanism. Likewise, the nonspecific mechanism Red is interchangeable between 80 and . Maturation of DNA by 80. The Ter recombinants excised by 80 from tandem dilysogens are packaged into a 80 protein coat. This contrasts with the fact, already mentionned by Dove, that 80 is extremely inefficient for packaging phage superinfecting a -lysogen. The latter result is also found when the helper phage is a hybrid with the left arm of (80hy4 or 80hy41 — see Fig. 1). However, the maturation of the superinfecting is much more efficient if the 80hy used as a helper has the att-N region of (like 80hy1). Conversely a with the att-N region of 80 (hy6 — see Fig. 1) is packaged more efficiently by 80 or 80hy4 than by 80hy1. It is suggested that the maturation of chromosome superinfecting an immune cell requires a recombination with the helper phage. Vegetative Functions. Among the replicative functoons O and P, the latter only can be supplied by 80. That N mutants are efficiently helped by 80 does not tell that 80 provides the defective with an active N product; the chromosomes are simply packaged into a 80 coat. This shows that 80 is unable to switch on the late genes of . That neither 80 nor any of the 80hy tested can provide an active N product is shown in a more direct way by their complete failure to help N ^-r₁₄; this phage carries a polar mutation which makes the expression of genes O and P entirely N-dependant. The maturation of a N ^- by 80 contrasts with the fact that mutants affected in late genes (A, F or H) are not efficiently helped by 80. This suggests that the products coded by these genes are not interchangeable between 80 and , and that packaging of DNA into 80 coats is possible but inhibited when late proteins are present in the cell. Activation of the Late Genes. Among the im ₈₀ h ⁺ hybrids tested, only 80hy41 is able to switch on the late genes of a N defective mutant. This hybrid differs from the other hybrids studied here, by the fact that it has the Q-S-R region of (see Fig. 1). The results are consistant with the view that the product of Q gene is sufficient for activating the late genes of a DNA. N would thus control the expression of late genes only indirectly by controlling the expression of gene Q (Couturier & Dambly have independantly reached the same conclusion, 1970). Furthermore the failure of 80 and of the 80hy1 and 80hy4 to activate the late genes of would imply that these phages are unable to provide an Q product active on the chromosome Reciprocally, switches on the late genes of prophage 80hy41, but not of prophages 80hy1 and 80hy4. This suggests that the initiation of late genes expression takes place at a main specific site located in the Q-S-R region of the chromosome. The expression of the late genes would thus be sequential, and proceed through the left arm only when steaky ends cohere. Similar conclusions were reached independantly by Toussaint (1969) and by Herskowitz and Signer (1970).

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Ce travail a été réalisé dans le cadre du contrat d'association Euratom-U. L. B. 007-61-10 ABIB et avec l'aide du Fonds de la Recherche Fondamentale Collective.     

The quantum efficiency of photosystem II and its relation to non-photochemical quenching of chlorophyll fluorescence; the effect of measuring-and growth temperature

The relation between the quantum yield of oxygen evolution of open photosystem II reactions centers (_p), calculated according to Weis and Berry (1987), and non-photochemical quenching of chlorophyll fluorescence of plants grown at 19°C and 7°C was measured at 19°C and 7°C. The relation was linear when measured at 19°C, but when measured at 7°C a deviation from linearity was observed at high values of non-photochemical quenching. In plants grown at 7°C this deviation occurred at higher values of non-photochemical quenching than in plants grown at 19°C. The deviations at high light intensity and low temperature are ascribed to an increase in an inhibition-related, non-photochemical quenching component (q_I).The relation between the quantum yield of excitation capture of open photosystem II reaction centers (_exe), calculated according to Genty et al. (1989), and non-photochemical quenching of chlorophyll fluorescence was found to be non-linear and was neither influenced by growth temperature nor by measuring temperature.At high PFD the efficiency of overall steady state electron transport measured by oxygen-evolution, correlated well with the product of q _N and the efficiency of excitation capture (_exe) but it deviated at low PFD. The deviations at low light intensity are attributed to the different populations of chloroplasts measured by gas exchange and chlorophyll fluorescence and to the light gradient within the leaf.Abbreviations F₀ basic fluorescence - F₀ basic fluorescence, thylakoid in energized state - F_m maximal fluorescence - F_m maximum fluorescence in energized state - F_s steady state fluorescence - F_v maximal variable fluorescence - PFD photon flux density - PS II_rc Photosystem II reaction center - q_F0 quenching of basic fluorescence - q_E energy related quenching - q_N non-photochemical quenching:-q_f-total quenching - q_I inhibition-related quenching - q_p photochemical quenching - q_r quenching due to state transition - R_d dark respiration - _p PS II efficiency of excitation capture of open PS II_rc - _pe extrapolated minimal value of _p - _p0 extrapolated maximal value of _p - _si quantum efficiency of linear electron transport, calculated from gas exchange measurements based on incident light - _sf quantum efficiency of linear electron transport, calculated from fluorescence measurements, based on incident measuring light     

Different Relationship Between Electron Transport and CO2 Assimilation in two Zea mays Cultivars as Influenced by Increasing Irradiance

Gas exchange and fluorescence parameters were measured simultaneously in two Zea mays L. cultivars (Liri and 121C D8) to assess the relationship between the quantum yield of electron transport (_PS2) and the quantum yield of CO₂ assimilation (_CO2) in response to photosynthetic photon flux density (PPFD). The cv. Liri was grown under controlled environmental conditions in a climate chamber (CC) while cv. 121C D8 was grown in CC as well as outdoors (OT). By exposing the two maize cultivars grown in CC to an increasing PPFD, higher photosynthetic and photochemical rates were evidenced in cv. Liri than in cv. 121C D8. In Liri plants the _PS2/_CO2 ratio increased progressively up to 27 with increasing PPFD. This suggests that the reductive power was more utilised in non-assimilatory processes than in CO₂ assimilation at high PPFD. On the contrary, by exposing 121C D8 plants to increasing PPFD, _PS2/_CO2 was fairly constant (around 11–13), indicating that the electron transport rate was tightly down regulated by CO₂ assimilation. Although no significant differences were found between _PS2/_CO2 of the 121C D8 maize grown under CC and OT by exposing them to high PPFD, the photosynthetic rate and photochemical rates were higher in OT maize plants.     

Three-dimensional structures of photosynthetic reaction centers

In this article, the three-dimensional structures of photosynthetic reaction centers (RCs) are presented mainly on the basis of the X-ray crystal structures of the RCs from the purple bacteria Rhodopseudomonas (Rp.) viridis and Rhodobacter (Rb.) sphaeroides. In contrast to earlier comparisons and on the basis of the best-defined Rb. sphaeroides structure, a number of the reported differences between the structures cannot be confirmed. However, there are small conformational differences which might provide a basis for the explanation of observed spectral and functional discrepancies between the two species.A particular focus in this review is on the binding site of the secondary quinone (Q_B), where electron transfer is coupled to the uptake of protons from the cytoplasm. For the discussion of the Q_B site, a number of newlydetermined coordinate sets of Rp. viridis RCs modified at the Q_B site have been included. In addition, chains of ordered water molecules are found leading from the cytoplasm to the Q_B site in the best-defined structures of both Rp. viridis and Rb. sphaeroides RCs.Abbreviations B_A accessory bacteriochlorophyll in the active branch - B_B accessory bacteriochlorophyll in the inactive branch - D primary electron donor (special pair) - D_L special pair bacteriochorophyll bound by the L subunit - D_M special pair bacteriochorophyll bound by the M subunit - Q_A primary electron acceptor quinone - Q_B secondary electron acceptor quinone - RC reaction center - Rb. Rhodobacter - Rp. Rhodopseudomonas - _A bacteriopheophytin in the active branch - _B bacteriopheophytin in the inactive branch     

On the relationship between chlorophyll fluorescence quenching and the quantum yield of electron transport in isolated thylakoids

The relationship between the empirical fluorescence index F/Fm and the quantum yield of linear electron flow, ^s, was investigated in isolated spinach thylakoids. Conditions were optimised for reliable determination of F/Fm and ^s with methyl viologen or ferricyanide as electron acceptors under coupled and uncoupled conditions. Ascorbate in combination with methyl viologen was found to stimulate light-induced O₂-uptake which is not reflected in F/Fm and interpreted to reflect superoxide reduction by ascorbate. In the absence of ascorbate, the plot of F/Fm vs. ^s was mostly linear, except for the range of high quantum yields, i.e. at rather low photon flux densities. With ferricyanide as acceptor, use of relatively low concentrations (0.1–0.3 mM) was essential for correct Fm-determinations, particularly under uncoupled conditions. Under coupled and uncoupled conditions the same basic relationship between F/Fm and ^s was observed, irrespective of ^s being decreased by increasing light intensity or by DCMU-addition. The plots obtained with methyl viologen and ferricyanide as acceptors were almost identical and similar to corresponding plots reported previously by other researchers for intact leaves. It is concluded that the index F/Fm can be used with isolated chloroplasts for characterisation of such types of electron flow which are difficult to assess otherwise, as e.g. O₂ dependent flux. The origin of the non-linear part of the relationship is discussed. An involvement of inactive PS II centers with separate units and inefficient Q_A-Q_B electron transfer is considered likely.Abbreviations AsA - ascorbate - DCMU - 3-(3,4-dichlorophenyl)-1,1-dimethylurea - MDA - monodehydroascorbate - MV - methyl viologen - PAR - photosynthetically active radiation - SOD - superoxide dismutase This paper is dedicated to David Walker who after 40 years in the field of photosynthesis is now retiring from his duties at Sheffield University.     

Relationships between EUF-N fractions,N uptake and quality of sugar beet in deep loess soils of Southern Lower Saxony

Summary In field experiments conducted in 1981 on deep loess soils a significant correlation was obtained between EUF-N content in the topsoil and N in sugar beet roots as well as in whole plants. A very close correlation was found to exist between EUF-N values in June 1981 and -amino N in sugar beet roots at harvest. Also other quality criteria such as the contents of sugar, K and Na in roots and yield parameters correlated with EUF-N contents in topsoils.The inorganic and organic EUF-N fractions changed during the vegetation period due to both N uptake by the crop and mineralization. Therefore it appears to be expedient to use both fractions when calculating N fertilizer requirements.The correlation between EUF-N (topsoil samples drawn in the year preceding sugar beet) and sugar yield increases obtained by N fertilization that was found in Austria¹² was confirmed in our experiments with soils from Southern Lower Saxony.     

The occurrence of photoinhibition in an over-wintering crop of oil-seed rape (Brassica napus L.) and its correlation with changes in crop growth.

The maximum quantum yield of CO₂ uptake (), as a measure of light-limited photosynthetic efficiency, of a Brassica napus crop was measured on most days from mid-October until mid-April. During the winter, was decreased by up to 50%. From January to March, leaves exposed to direct sunlight on days with minimum air temperatures near or below 0° C showed significant reductions in . However, control leaves, artificially shaded from direct sunlight on these days, did not show any decrease. This provides statistical evidence for a light-dependent inhibition of CO₂ uptake in the field, termed here photoinhibition. Recovery of during warmer interludes was slow, requiring approx. 2–3 d. Concurrent measurements of light interception by the crop canopy and dry-matter accumulation showed that the efficiency with which intercepted light was converted into dry matter varied, declin between January and March to 33% of the value recorded in the warmer autumn months. Conversion efficiency was significantly and positively correlated with quantum yield. In a closed crop canopy during winter, light will be limiting for photosynthesis for much of the time. Under these conditions depression of at the leaf level may contribute significantly to decreased dry-matter accumulation at the crop level, since the light-limited rate of CO₂ uptake is likely to govern canopy photosynthetic rate.Abbreviations and Symbols C mean crop growth rate - E_c crop conversion efficiency - F_m, F_v maximum, variable chlorophyll fluorescence - L instantaneous leaf area index - PPFD photosynthetically active photon flux density - quantum yield of CO₂ uptake for absorbed light P.K.F. was in receipt of a research studentship from the Science and Engineering Research Council.     

Ecology of Proteus flagellar phages

Summary Phages identical to X ₇ in host range and serological properties are liberated by several Proteus strains. Another Proteus flagellar phage, X ₈, differs from X ₇ antigenically and in host range.     

Deuterium isotope effects and fractionation factors of hydrogen-bonded A:T base pairs of DNA

Deuterium isotope effects and fractionation factors of N1...H3–N3 hydrogen bonded Watson–Crick A:T base pairs of two DNA dodecamers are presented here. Specifically, two-bond deuterium isotope effects on the chemical shifts of ¹³C2 and ¹³C4, ²¹³C2 and ²¹³C4, and equilibrium deuterium/protium fractionation factors of H3, , were measured and seen to correlate with the chemical shift of the corresponding imino proton, _H3. Downfield-shifted imino protons associated with larger values of ²¹³C2 and ²¹³C4 and smaller values, which together suggested that the effective H3–N3 vibrational potentials were more anharmonic in the stronger hydrogen bonds of these DNA molecules. We anticipate that ²¹³C2, ²¹³C4 and values can be useful gauges of hydrogen bond strength of A:T base pairs.     

Host factor requirements and some properties of ΦXtB

Summary Replication of XtB, a capsid mutant of bacteriophage X174, depends on the host functions directed by the E. coli genes dnaE, dnaF, dnaG, dnaZ, lig and rep. The cellular products of dnaA, dnaB, dnaC(D), dnaI, dnaP, polA, polB and xth genes are, however, dispensable for the viral growth. In these host factor requirements, XtB resembles phages K and St-1, rather than X174. Host ranges of XtB, St-1 and K overlap considerably, and growth temperature of the three phages is somewhat higher than that of X174. Furthermore, XtB is, like K, inactivated by antiserum against St-1. XtB may thus fill an evolutionary gap between the X174 group and the St-1 group.     

Quantifying Protein Folding Transition States with ΦT

A number of reaction coordinates have been proposed for reduced-dimensionalityrepresentations of a protein's folding free energy surface. We discuss in detail the entropic reaction coordinate _T = SS, recently introduced to quantify the conservation of mutations and the location of the folding transition state based on experimental temperature-tuning data. Numerical simulations illustrate the advantages as well as the limitations of _T. _T can be determined from experiment,computation, and analytical theory; _T can also be used to investigate structurally localized perturbations of the free energy surface. However, _T is only a relative reaction cordinate; furthermore, proteins undergo cold denaturation at sufficiently low temperatures, and care must be taken ininterpreting _T near the region where G/T = 0, particularly if the heat capacity change upon folding is small.     

Two useful dimensionless parameters that combine physiological, operational and bioreactor design parameters for improved control of dissolved oxygen

Two new dimensionless parameters ( and ) are proposed for calculating the proportional, integral, and derivative constants of a dissolved oxygen proportional integral-derivative (PID) feed-back control algorithm from knowledge of the growth rate, bioreactor design and operation variables. The values of and were determined for a broad range of Reynolds numbers (between 1000 to 40 000) during the exponential growth phase of two highly different processes: fermentations of recombinant Escherichia coli and cultures of human hematopoietic cells. The utility of and for use in dissolved oxygen self-tunning adaptive control algorithms is discussed.     

Is There a Field-Theoretic Explanation For Precursor Biopolymers?

A Hu-Barkana-Gruzinov cold dark matter scalarfield may enter a weak isospin invariant derivative interactionthat causes the flow of right-handed electrons to align parallelto (). Hence, in the outer regions of galaxies where () islarge, as in galactic halos, the derivative interaction mayinduce a chirality-imbued quantum chemistry. Such a chirality-imbued chemistry would in turn be conducive to the formation ofabundant precursor biopolymers on interstellar dust grains,comets and meteors in galactic halo regions, with subsequentdelivery to planets in the inner galactic regions where and() are concomitantly near zero and left-right symmetricterrestrial quantum chemistry prevails.     

Involvement of growth differentiation factor-15/macrophage inhibitory cytokine-1 (GDF-15/MIC-1) in oxLDL-induced apoptosis of human macrophages in vitro and in arteriosclerotic lesions

Growth differentiation factor-15/macrophage inhibitory cytokine-1 (GDF-15/MIC-1) is a new member of the transforming growth factor beta (TGF-) superfamily, which has most recently been found in activated macrophages (M). We have now investigated GDF-15/MIC-1 in human M after exposure to oxidized low-density lipoproteins (oxLDL) related mediators in vitro and in arteriosclerotic carotid arteries. Using RT-PCR and Western blotting a pronounced induction of GDF-15/MIC-1 expression by oxLDL, C₆-ceramide, tumor necrosis factor (TNF) and hydrogen peroxide (H₂O₂) was found in cultured human M. In 11 human arteriosclerotic carotid arteries, immunohistochemical analyses supported by computer-assisted morphometry and regression analyses demonstrated a significant colocalization of GDF-15/MIC-1 immunoreactivity (IR) with oxLDL IR and manganese superoxide dismutase (MnSOD) IR in CD68 immunoreactive (ir) M, which were also expressing AIF-IR (apoptosis-inducing factor), caspase-3-IR (CPP32), PARP-IR, c-Jun/AP-1-IR and p53-IR. Our data suggest that GDF-15/MIC-1 is inducible in human M by oxLDL and its mediators in vitro and is supposed to contribute to oxidative stress dependent consequences in arteriosclerotic plaques, e.g. modulating apoptosis and inflammatory processes in activated M.The last two authors are senior authors.     

Virulence as a consequence of genome instability of a novel temperate bacteriophage, ΦRsG1, of Rhodobacter sphaeroides Y

A novel temperate bacteriophage, designated RsG1, was isolated from Rhodobacter sphaeroides Y (previously designated Rhodopseudomonas sphaeroides) following exposure to mitomycin C. The phage morphology, as revealed from electron microscopy, showed a hexagonal head (90 by 46.5 nm) connected with a tail (116 by 9.4 nm), to which a collar was proximally attached. A morphologically similar phage was also produced by spontaneous lysis of the cells. While RsG1 did not grow on any other bacterial strain tested, spontaneously produced phage particles propagated (and formed plaques) on R. sphaeroides Y still carrying RsG1 in the prophage state. The genome of RsG1 consisted of double stranded linear DNA with cohesive ends and a GC-content of 71.8 mol%. The DNA molecules formed circles in vitro with a mean contour length of 17.18±0.4 m, which corresponds to a size of 49 kbase pairs (kb). On the other hand, DNA extracted from the virulent phage particles was heterogeneous and consisted of two DNA species of different size, occurring in a ratio of about 1:1. These molecules also circularized having contour lengths of 17.18±0.4 m and 14.02±0.41 m corresponding to 49 and 40 kb, respectively. Restriction digest analysis of the two DNA species and DNA from RsG1 indicated that they are similar, and allowed the indentification of an 11.5 kb EcoRI fragment that carries the cohesive ends. Because DNA from RsG1 and the 49 kb DNA of the virulent phage particles were indistinguishable with the criteria applied, it is suggested that phage particles containing the 40 kb DNA represent the virulent type of phage, termed RsG1.1.     

Sinking properties of some phytoplankton shapes and the relation of form resistance to morphological diversity of plankton – an experimental study

Form resistance () is a dimensionless number expressing how much slower or faster a particle of any form sinks in a fluid medium than the sphere of equivalent volume. Form resistance factors of PVC models of phytoplankton sinking in glycerin were measured in a large aquarium (0.6 × 0.6 × 0.95 m). For cylindrical forms, a positive relationship was found between and length/width ratio. Coiling decreased in filamentous forms. Form resistance of Asterionella colonies increased from single cells up to 6-celled colonies than remained nearly constant. For Fragilaria crotonensis chains, no such upper limit to was observed in chains of up to 20 cells (longer ones were not measured). The effect of symmetry on was tested in 1–6-celled Asterionella colonies, having variable angles between the cells, and in Tetrastrum staurogeniaeforme coenobia, having different spine arrangements. In all cases, symmetric forms had considerably higher form resistance than asymmetric ones. However, for Pediastrum coenobia with symmetric/asymmetric fenestration, no difference was observed with respect to symmetry. Increasing number and length of spines on Tetrastrum coenobia substantially increased . For a series of Staurastrum forms, a significant positive correlation was found between arm-length/cell-width ratio and : protuberances increased form resistance. Flagellates (Rhodomonas, Gymnodinium) had a < 1: they sank faster than the spheres of equivalent volume. Ceratium ( = 1.61) proved an exception among flagellates: in most forms tested in this study (ellipsoid flagellates, Staurastrum forms with no or very short protuberances, and Cosmarium forms), > 1. The highest value ( = 8.1) was established for a 20-celled Fragilaria crotonensis chain. Possible origin of the so-called `vital component' (a factor that shows how much slower viable populations sink than morphologically similar senescent or dead ones) is discussed, as is the role of form resistance in evolution of high diversity of plankton morphologies.An erratum to this article can be found at     

Conformational energy of the 5-membered ring. Implication of geometric and energetic properties in the conformational characteristics

In a previous article (8) a geometrical study of the five-membered ring showed that: a) for the case of the 20 symmetrical C₂ and C_s conformations, the pseudorotation formulae for the torsion angles are a geometrical property of the ring; b) geometrical considerations alone are unable to define the puckering amplitude, the bond angle values, and the pathway between two symmetrical conformations. Here we examine how the energy equations enable us to define the deformation amplitude _m, establish the bond angles expressions and check the energy invariability along the pseudorotation circuit. The problem is next developed fully in the case where the bond and torsional energy only are considered: the literal expression¹ of _m is then given as a function of the bond angle which cancels out the bond angle energy. A numerical application is carried out on cyclopentane and the values of the parameters K^t, K¹ and used in the Conformational energy calculations are considered.Notations used 1 _i bond lengths 1 in the case of the regular ring - _i torsional angles - _i bond angles - 3/5 = 108 - 4/5 = 144 - , _{i i} – = complement to the 108 bond angle _i - _T - E Conformational energy of the 5-membered ring - E Conformational energy difference between planar and deformed ring - A _n Coefficients of the energy development in terms of - E _i ^l Bond energy relative to atom i (associated with angle _i) - K _i ^l Bond constant relative to atom i (associated with angle _i) - E _i ^l Torsional energy relative to the i ^th bond (associated with angle _i) - k _i ^l Torsional constant relative to the i ^th bond (associated with angle _i) - _i Angle _i value corresponding to zero bond energy E _i ^l (when the 5 atoms of the ring are identical, _i ) - r _ij Distance between atoms i and j - q _i Charge carried by atom i - e Constant of proportionality including the effective dielectric constant - A _ij, B_ij, d_ij Coefficients dependent on the nature of the atoms i and j and accounted for in the Van der Waals energy and hydrogen bond expressions - S (r _ij) Electrostatic contribution to the hydrogen bond energy - P Pseudorotation phase angle - _m Maximum torsional angle value characterising the deformation amplitudeM     

Reaction centers from three herbicide resistant mutants of Rhodobacter sphaeroides 2.4.1: Kinetics of electron transfer reactions

Electron transfer rates were measured in RCs from three herbicide-resistant mutants with known amino acid changes to elucidate the structural requirements for last electron transfer. The three herbicide resistant mutants were IM(L229) (Ile-L229 Met), SP(L223) (Ser-L223 Pro) and YG(L222) (Tyr-L222 Gly). The electron transfer rate D⁺Q_A ^-Q_BD⁺Q_AQ_B (k _AB) is slowed 3 fold in the IM(L229) and YG(L222) RCs (pH 8). The stabilization of D⁺Q_AQ_B ^- with respect to D⁺Q_AQ_B ^- (pH 8) was found to be eliminated in the IM(L229) mutant RCs (G⁰ 0 meV), was partially reduced in the SP(L223) mutant RCs (G⁰=–30 meV), and was unaltered in the YG(L222) mutant RCs (G⁰=–60 meV), compared to that observed in the native RCs (G⁰=–60 meV). The pH dependences of the charge recombination rate D⁺Q_AQ_B ^-DQ_AQ_B (k _BD) and the electron transfer from Q_A ^- (k _QA ^-Q_A) suggest that the mutations do not affect the protonation state of Glu-L212 nor the electrostatic interactions of Q_B and Q_B ^- with Glu-L212. The binding affinities of UQ₁₀ for the Q_B site were found in order of decreasing values to be native IM(L229) > YG(L222) SP(L223). The altered properties of the mutant RCs are used to deduce possible structural changes caused by the mutations and are dicscussed in terms of photosynthetic efficiency of the herbicide resistant strains.Abbreviations Bchl bacteriochlorophyll - Bphe bacteriopheophytin - cholate 3,7,12-trihydroxycholanic acid - D donor (bacteriochlorophyll dimer) - EDTA ethylenediamine tetraacetic acid - Fe²⁺ non-heme iron atom - LDAO lauryl dimethylamine oxide - PS II photosystem II - Q_A and Q_B primary and secondary quinone acceptors - RC bacterial reaction center - Tris tris(hydroxymethyl)aminomethane - UQ₀ 2,3-dimethoxy-5-methyl benzoquinone - UQ₁₀ ubiquinone 50