Effects of channelisation on stream habitat in relation to a spate and flow refugia for macroinvertebrates in northern Japan

1. The effects of channelisation on macroinvertebrates were examined in relation to a spate and flow refugia. Habitat components that can function as flow refugia were identified in a small, low‐gradient stream in northern Hokkaido, Japan. 2. Macroinvertebrates and their habitat characteristics (depth, current velocity and substratum) were sampled and measured in natural and channelised sections on three occasions: before, during and immediately after a spate. For macroinvertebrate sampling and habitat measurements, five (riffle, glide, pool, backwater and inundated habitats) and three (channelised‐mid, channelised‐edge and inundated habitats) habitat types were classified in the natural and channelised section, respectively. 3. The rate of velocity increase with discharge was compared among habitat types to determine which habitat types were less affected by increased discharge. The rate was the highest in riffles followed by glides and channelised‐mids. Backwaters maintained low current velocity even at high flow. In addition, current velocity in both natural and channelised inundated habitats was low relative to other habitat types during the spate. 4. Through the spate, total density of macroinvertebrates in channelised‐mids and taxon richness in both channelised‐mids and edges decreased. In the natural section, however, such a significant decrease was not found except for taxon richness in pools. This indicated that the spate had a greater impact on assemblages in the channelised section. Riffle assemblages exhibited a rapid recovery immediately after the spate, suggesting the existence of flow refugia in the natural section. Among the habitat types we examined, backwaters and inundated habitats appeared to have acted as flow refugia, because these habitats accumulated macroinvertebrates during the spate. 5. The lower persistence of the macroinvertebrate assemblage in the channelised section was attributable to the lower availability of flow refugia such as backwaters and inundated habitats. Our results emphasised the importance of considering flow fluctuations and refugia in assessing the effects of channelisation. In addition, the lateral heterogeneity of stream channels should be considered in stream restoration and management.     

A qualitative procedure for the assessment of the habitat integrity status of the Luvuvhu River (Limpopo system,South Africa)

The riparian zone and instream habitat integrity of the Luvuvhu River were assessed based on a qualitative rating of the impacts of major disturbance factors such as water abstraction, flow regulation, bed and channel modification, etc. A system was devised to assess the impact of these factors on the relative frequency and variability of habitats on a spatial and temporal scale gauged against habitat characteristics that could have been expected to occur under conditions not anthropogenically influenced. It was found that deterioration of habitat integrity can be ascribed primarily to water abstraction. This has resulted in the cessation of surface flow in a naturally perennial river during the dry season and during droughts with consequent tree deaths and a loss of fast flowing instream habitat types in the main stem of the river. The relatively small high rainfall area in the catchment, the highly variable rainfall pattern and the occurrence of sporadic severe droughts exacerbate the impact of water abstraction on the instream and riparian habitats with expected detrimental consequences for the associated biota. The effect of water abstraction is particularly severe in the lower part of the river which flows through the Kruger National Park as no perennial tributaries join the Luvuvhu River in this section. Other factors which affect the habitat integrity of the river are the removal of indigenous riparian vegetation in some river sections, encroachment by exotic vegetation, bank erosion and stream bed modification.     

Macroinvertebrate communities in Phragmites australis (Cav.) Trin. ex Steud. reed beds and open bank habitats in central victorian streams in Australia

Reed invasion is a common phenomenon of open streams with disturbed riparian vegetation in river catchments. Knowledge of the effects of such vegetation change on aquatic communities is fundamental to river management. Macroinvertebrate fauna in Phragmites australis (Cav.) Trin. ex Steud. and open bank habitats were examined in three rivers in central Victoria in order to understand the effect of such littoral habitat on macroinvertebrates. Data were analysed using Partially Nested Factorial ANOVA with season, river and habitats as main effects. Habitat structure had a significant effect (p<0.05) on macroinvertebrate species richness, however this was not seasonally consistent across the three rivers. There was a significant increase (p<0.05) in macroinvertebrate taxa richness in Phragmites habitats during winter and spring seasons. Total abundance of taxa showed no consistent significant differences in the two habitats. Results of Canonical Analysis of Principle Coordinates indicated significant differences (p<0.05) in macroinvertebrate assemblages between Phragmites and bare bank habitats in all seasons. Habitat selection by taxa could be related to the microphysical environment of the habitats. This study suggests that reed beds create important littoral habitat structures which support diverse macroinvertebrate assemblages.     

Community structure and composition of microfaunal egg bank assemblages in riverine and floodplain sediments

Dormancy may be an important aspect influencing the ecology of riverine microfauna, yet fundamental knowledge concerning riverine egg bank communities is still scant compared with that for communities in floodplain habitats. We investigated the microfaunal egg bank communities in slackwater habitats of an Australian floodplain river, and compared them with the communities occurring in nearby floodplain wetlands. This was achieved by taking replicate sediment cores from paired examples of each habitat and later incubating the resting stages within these sediment cores. Results from the study indicated that the egg bank communities in each habitat differed in both composition and structure, with only 12 of the 31 taxa recorded being common to both habitat types. This suggests that in addition to supporting microfaunal persistence in the main channel, riverine egg bank communities represent an important source of microfaunal diversity together with floodplain egg bank communities in river–floodplain systems.     

Habitat alters the effect of false starts on seasonal‐wetland invertebrates

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Ephemeral floodplain habitats provide best growth conditions for juvenile Chinook salmon in a California river

We reared juvenile Chinook salmon for two consecutive flood seasons within various habitats of the Cosumnes River and its floodplain to compare fish growth in river and floodplain habitats. Fish were placed in enclosures during times when wild salmon would naturally be rearing in floodplain habitats. We found significant differences in growth rates between salmon reared in floodplain and river enclosures. Salmon reared in seasonally inundated habitats with annual terrestrial vegetation experienced higher growth rates than those reared in a perennial pond on the floodplain. Growth of fish in the non-tidal river upstream of the floodplain varied with flow in the river. When flows were high, there was little growth and high mortality, but when the flows were low and clear, the fish grew rapidly. Fish displayed very poor growth in tidally influenced river habitat below the floodplain, a habitat type to which juveniles are commonly displaced during high flow events due to a lack of channel complexity in the main-stem river. Overall, ephemeral floodplain habitats supported higher growth rates for juvenile Chinook salmon than more permanent habitats in either the floodplain or river. Variable responses in both growth and mortality, however, indicate the importance of providing habitat complexity for juvenile salmon in floodplain reaches of streams, so fish can find optimal places for rearing under different flow conditions.     

Spatial variability of the soil seed bank in a heterogeneous ephemeral wetland system in semi-arid Australia

Soil seed banks are an important component of plant community diversity in ephemeral wetlands, allowing many species to persist through unpredictable periods of flood and drought. Spatial variation of extant vegetation in such habitats commonly reflects patterns of flood history and often varies predictably between broadly differing hydro-geomorphic habitat types. Here we investigate whether spatial variation of soil seed banks is similarly controlled by fluvial processes at this scale. Results are presented from a seedling emergence trial using samples collected from a range of habitat types, and at different scales within these, in the ephemeral Narran Lakes system in semi-arid Australia. Composition and structure of soil seed banks varied significantly between habitat types reflecting broad differences in flood frequency. As predicted, germinable seed abundance was found to be highest in intermediately flooded habitats. Variability in soil seed bank composition at a local scale was also found to be influenced by hydrology with greater spatial heterogeneity evident in the river channel as well as amongst the least frequently inundated riparian and floodplain habitats.     

Fish species diversity in sand bank habitats of a neotropical river

The fish fauna of the Cinaruco River, an intermediate sized floodplain river that forms the southern boundary of the newly established Santos Luzardo National Park in the llanos of Venezuela, was sampled in 1993-1994. Due to highly seasonal rainfall, the nutrient-poor Cinaruco undergoes dramatic changes in water level, creating a variety of seasonally available habitats for fishes. Sand bank habitats are conspicuous features in both main-channel and lentic backwater areas, and support fish assemblages that are different from adjacent rocky shore and shrubby shore habitats. Seine samples from sand bank habitats revealed high alpha diversity, dominated numerically by a few species of small Characiformes. Comparisons among and between lagoon, side-channel, and main-channel sand bank habitats showed little assemblage similarity. Overall, sand bank habitats were used by 8 orders, 21 families, and 105 species of fish, mostly of size classes less than 100 mm. Several species are currently undescribed. Elements which may contribute to high fish diversity include proximity to a diverse Amazonian fauna, seasonally dynamic habitat availability, the influence of keystone predators, and episodes of intermediate disturbance, such as seasonal release from intense biotic interactions.     

Microform bed clusters: are they preferred habitats for invertebrates in a flood‐prone stream?

SUMMARY 1. Microform bed clusters are bedform microunits in streams. They consist of an obstacle clast (a large surface stone) against which other stones are stacked in a specific manner. Stream ecologists have suggested that these clusters are better flood refugia and more valuable habitats for invertebrates than single surface stones because of their higher stability during high‐flow events and their greater diversity of microhabitats available for colonisation. 2. To test these predictions in the Schmiedlaine, a flood‐prone prealpine stream, we sampled invertebrates on clustered and single stones on a total of seven occasions including before and after a moderate spate, two major floods and a minor spate. We also monitored surface particle stability during the second major flood and the minor spate. 3. Before the second flood (return period 1–2 years), we determined the exact positions of 60 clusters (60 obstacle clasts with 136 associated smaller particles) and 50 single stones in a 250‐m reach. We sampled the fauna on stones in the clusters, on well‐embedded single stones, and on loose single stones. Only six obstacle clasts and one single stone remained after the flood, implying movement of almost the entire surface layer. Therefore, we sampled the invertebrates on stones in newly formed clusters, on well‐embedded and single loose stones 3 and 11 days after the flood. The minor spate, in contrast to the second flood, moved only one of 495 monitored surface particles. 4. Three days after the flood, invertebrate density on clustered stones and both single stone categories were similar and equalled 34% of the mean pre‐flood density. Eight days later, density had almost doubled. The relatively high survival and rapid recovery suggest that invertebrates found refugia during the flood. However, the very low stability of clusters and single stones implied that surface particles were unimportant as refugia. 5. Total invertebrate density and taxon richness were never higher on clustered than on single stones (regardless of the timing of sampling relative to the last previous high‐flow event). Densities of the seven most common taxa and invertebrate community structure were also generally similar between particle types. We conclude that microform bed clusters cannot be regarded as more valuable invertebrate habitats than single surface stones in the Schmiedlaine.     

Patterns of distribution of macroinvertebrate families in rivers of north-western Australia

1. The northern half of Western Australia is a large, sparsely populated area with a climate that ranges from monsoonal in the Kimberley to arid in the Gascoyne and Pilbara regions. The aquatic invertebrate fauna is poorly known. 2. Fifty-one sites located on 14 river systems were sampled three times between August 1994 and October 1995. A total of 90 taxa, most identified to family level, were collected. The fauna was dominated by insects, which constituted 74% of the total number of taxa collected. 3. Major habitats at each site were sampled separately and sites with more habitats tended to have a richer fauna. All habitats showed significant differences in taxonomic richness between regions. Family richness decreased with increasing latitude, being highest in the Kimberley region and lowest in the Gascoyne. 4. Despite the differences in taxon richness between regions, community composition of the aquatic invertebrate fauna at the family level did not differ greatly. Four major groups of sites were identified by cluster analysis, based on the invertebrate families present at each site, but differences between groups were small. 5. Significant temporal variation in taxon richness was found in channel habitat but not the three other habitats sampled (riffle, macrophyte, pool-rocks). Community composition in channel habitat varied temporally among groups of sites identified by cluster analysis but the pattern was not consistent.     

Selection of indicative taxa for river habitats: a case study on benthic macroinvertebrates using indicator species analysis and the random forest methods

The aim of the study was to evaluate the exclusivity and/or preference of macroinvertebrate taxa for river habitats. Indicator species analysis and random forests methods were applied to the data set of macroinvertebrate samples taken from 58 sampling points. Samples were classified according to habitat types defined by the position in a river channel and local hydraulic characteristics. 86 macroinvertebrate taxa were included in the analyses. High indicative values for habitats (importance value ≥50 and/or indicator value ≥40) were identified for 26 taxa. The results of both methods can be considered similar. Merged habitats of channel margin (margin of main channel and side arms) were mainly defined by “negative” indicator taxa (correct classification of given samples was caused by non-occurrence and low abundances of certain taxa in this habitat). In general, there was only a small group of taxa preferring these habitats. Taxa were not fully habitat specific because they mostly occurred in two or three habitat types. This could be the result of autecological plasticity of individual taxa and the connectivity among habitats. According to the experience from this case study, it can be concluded that both random forests and IndVal methods are suitable for the detection of indicative species, and random forests method has some additional advantages.     

Does Channel Incision Affect In‐stream Habitat? Examining the Effects of Multiple Geomorphic Variables on Fish Habitat

Incised river channels are dynamic components of fluvial systems, represent geomorphic degradation, and are encountered worldwide. Ecological effects of incision can be far‐reaching, affecting habitat availability and channel processes. Although incision can reflect habitat degradation, some studies suggest that important in‐stream habitats do not differ with the degree of incision. Therefore, we tested whether in‐stream habitat variables that are important to imperiled fishes differ in river reaches with varying degrees of incision. Because incision (measured using entrenchment ratio) had no discernable effect on in‐stream habitat characteristics (i.e., proportion fines, gravel, cobble, and macrophyte occurrence and length), we expanded our analysis to assess the effects of 29 additional geomorphic variables on in‐stream habitat. These analyses indicated that bank height, bed mobility, D₈₄, cross‐sectional area, bankfull width, and wetted perimeter accounted for 42% of macrophyte occurrence and 64% of macrophyte length variance. Postflood surveys indicated that macrophyte occurrence on cobble declined as bank height and bed mobility increased, and sediment size decreased, suggesting that sediment size and bed mobility have a stronger influence on in‐stream habitat than incision. Although channel incision often indicates environmental degradation, important aspects of habitat are not described by this measurement. Strategies that depend on incision to identify restoration sites may have limited habitat benefits in Southeastern Piedmont streams and rivers. Instead, landscape or shoal‐scale restoration approaches that increase coarse sediment proportions may increase macrophyte occurrence, length, and persistence. Sediment budgets that identify coarse and fine sediment sources and transport may be useful to prioritize restoration approaches.     

The significance of meandering channel to habitat diversity and fish assemblage: a case study in the Shibetsu River,northern Japan

This study examined the structure and function of habitats for fish, the contribution to fish populations, and the effects of channel modification on habitats and fish populations in the lowland meandering Shibetsu River, northern Japan. Electrofishing and environmental measurements were conducted in bank areas of habitats constituting natural meandering and modified reaches. All types of habitats in a meandering reach highly contributed to the fish population(s). In particular, the contributions of lateral and wood habitats to fish populations were generally high, despite the low spatial extent of these habitats. The modified reach was simplified and had fewer types of habitats with uniform currents, and there was a low abundance of most fish within these habitats. Abundance of each fish group (taxa) was negatively affected by the changes in the habitats and/or channel shortening (i.e., decrease in the absolute abundance of habitat) due to river modification, which was implemented during 1950–1978. This study suggests that the recovery of all the habitat types is important in meander restoration and that the changes in habitat types and abundance should be examined in monitoring meander restoration and channel shortening.     

Composition and Structure of the Chironomidae (Insecta: Diptera) Community Associated with Bryophytes in a First-Order Stream in the Atlantic Forest, Brazil

This study describes the structure of the Chironomidae community associated with bryophytes in a first-order stream located in a biological reserve of the Atlantic Forest, during two seasons. Samples of bryophytes adhered to rocks along a 100-m stretch of the stream were removed with a metal blade, and 200-mL pots were filled with the samples. The numerical density (individuals per gram of dry weight), Shannon’s diversity index, Pielou’s evenness index, the dominance index (DI), and estimated richness were calculated for each collection period (dry and rainy). Linear regression analysis was employed to test the existence of a correlation between rainfall and the individual’s density and richness. The high numerical density and richness of Chironomidae taxa observed are probably related to the peculiar conditions of the bryophyte habitat. The retention of larvae during periods of higher rainfall contributed to the high density and richness of Chironomidae larvae. The rarefaction analysis showed higher richness in the rainy season related to the greater retention of food particles. The data from this study show that bryophytes provide stable habitats for the colonization by and refuge of Chironomidae larvae, mainly under conductions of faster water flow and higher precipitation.     

Are streamside buffers edge-affected habitat for ground-dwelling forest beetle assemblages?

Reservation of forest in riparian buffers is common practice in commercial forestry areas worldwide, potentially providing valuable habitat for biodiversity dependent on mature forest. However, the habitat value of narrow reserve corridors can be compromised by edge effects. We investigated the habitat value of streamside buffers in wet eucalypt forest for ground-dwelling beetles in Tasmania, Australia. Beetles were collected with pitfall traps in five replicates of four habitats: unlogged corridors of mature forest in streamside reserves (buffers) with clearfelling-derived logging regeneration either side; continuous mature upslope forest; continuous mature riparian forest; and <20-year-old upslope clearfelling-derived logging regeneration. Streamside reserve widths on each side of the stream were on average 40 ± 6 m (±95% CI) from reserve edge to stream. Beetle assemblages in logging regeneration differed substantially from those in the unlogged habitats, including the streamside reserves. Streamside reserve assemblages nevertheless differed from those of the continuous unlogged areas. Assemblage composition in streamside reserves was most similar to that in continuous mature riparian forest, although beetle diversity was higher in the reserves. Our results suggest that although streamside reserves provide habitat for the majority of commonly collected beetle species occurring in continuous mature forest, wider reserve corridors in the wet eucalypt forests of Tasmania may be required to provide habitat that is not edge-affected.     

Effects of Road Crossings on Stream and Streamside Salamanders

Abstract: Salamanders are important members of faunal communities in Appalachian Mountain (USA) streams, and the use of salamanders as bioindicators is increasing. Roads are a part of the modern landscape, but effects of roads on stream and streamside salamander diversity and abundance is not clear. We sampled streams in central West Virginia, USA, using quadrats placed along transects in the flowing channel, dry channel, and stream bank to assess salamander diversity, richness, and abundance during 2004. We used Akaike's Information Criterion for model selection at reach (i.e., above and below culverts) and stream scales. Salamander diversity and richness was affected by elevation, stream gradient, canopy cover, and the presence of roads. Overall, stream and riparian habitat quality was the most important factor affecting salamander richness. The presence of roads, stream gradient, and elevation received the most empirical support for predicting species' abundances. Roads benefited disturbance-tolerant species but negatively affected other species. Impacts of roads and culverts on habitat should be considered by federal and state transportation agencies and natural resources agencies during the planning process and addressed through mitigation efforts. Managers should install culverts that are as wide as the stream channel, at grade with the streambed, and dominated by rubble substrate to provide maximum benefit for salamanders. (JOURNAL OF WILDLIFE MANAGEMENT 72(3):760–771; 2008)     

Macroinvertebrate–habitat relationships in the River Teifi catchment and the significance to conservation

SUMMARY. 1. A macroinvertebrale survey of various habitats (e.g. riffles, pools, tree roots) at sixteen sites in the Teifi catchment in September 1981 yielded 217 taxa excluding Hydracarina and Chironomidae.
2. Sites with the greatest number of habitats were generally rich in taxa and supported the highest number of 'rare' species, the latter generally being associated with vegetation. However, species were not generally restricted to particular habitats although ecdyonurid mayflies predominated in riffles and one leptocerid caddisfly was principally collected from tree roots.
3. Four groups of taxa which characterized three habitat groups were established using classification procedures and it was concluded that three habitat types (eroding, depositing and vegetation) should be sampled to describe adequately the macroinvertebrate fauna at each site.
4. Three attributes (species richness, species rarity and site uniqueness) were used to establish the conservational value of each site; in general, the main river and one lowland tributary were of highest conservational significance.
5. Multiple regression analyses were used to establish significant relationships between the three attributes and environmental features such as number of habitats, altitude, river width, pH and total hardness. Such relationships may facilitate a rapid assessment of resource value without expensive biological survey.     

Association of macroinvertebrate assemblages with dissolved oxygen concentration and wood surface area in selected subtropical streams of the southeastern USA

Woody debris (CWD) is an important habitat component in northern Gulf of Mexico coastal plain streams, where low gradients and low flows allow accumulation of CWD and promote low dissolved oxygen (DO) concentrations. We tested the influences of CWD and DO on stream macroinvertebrates experimentally by placing two surface area CWD treatments each in three concentrations of ambient DO in two streams in Louisiana, USA, with macroinvertebrates collected from ambient woody debris used as a control. We also sampled macroinvertebrates in benthic and woody debris habitats in three streams twice yearly over 2 years to examine the applicability of the experimental results. Total abundance, richness (generic), and Shannon–Wiener diversity were all higher in lower DO conditions during the experiment, and total abundance was higher in the larger CWD treatment. Stream sampling corroborated the relationship between higher diversity and low DO in both benthic and woody debris habitats, but the relationship between richness and low DO only was supported in benthic habitats. Few taxa correlated with DO or CWD in the experiment (5 of 21 taxa) or stream survey (2 of 54 taxa). Whereas most taxa were uncorrelated with experimentally manipulated and in-stream measured variables, we suggest these taxa respond as generalists to stream habitat and physicochemistry. Based on this experiment and stream sampling, we believe the majority of macroinvertebrates in these streams are tolerant of seasonally low DO conditions.     

The response of perennial and temporary headwater stream invertebrate communities to hydrological extremes

The headwaters of karst rivers experience considerable hydrological variability, including spates and streambed drying. Extreme summer flooding on the River Lathkill (Derbyshire, UK) provided the opportunity to examine the invertebrate community response to unseasonal spate flows, flow recession and, at temporary sites, streambed drying. Invertebrates were sampled at sites with differing flow permanence regimes during and after the spates. Following streambed drying at temporary sites, dewatered surface sediments were investigated as a refugium for aquatic invertebrates. Experimental rehydration of these dewatered sediments was conducted to promote development of desiccation-tolerant life stages. At perennial sites, spate flows reduced invertebrate abundance and diversity, whilst at temporary sites, flow reactivation facilitated rapid colonisation of the surface channel by a limited number of invertebrate taxa. Following streambed drying, 38 taxa were recorded from the dewatered and rehydrated sediments, with Oligochaeta being the most abundant taxon and Chironomidae (Diptera) the most diverse. Experimental rehydration of dewatered sediments revealed the presence of additional taxa, including Stenophylax sp. (Trichoptera: Limnephilidae) and Nemoura sp. (Plecoptera: Nemouridae). The influence of flow permanence on invertebrate community composition was apparent despite the aseasonal high-magnitude flood events. Flow permanence was also critical in determining the community response to the spate flows. Following streambed drying at temporary sites, the surficial sediments overlying the karstic bedrock functioned as an effective refugium for several taxa. The development of aquatic insects following experimental rehydration indicated that these taxa survived in dewatered sediments as desiccation-resistant eggs. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users. Handling editor: Sonja Stendera     

Aquatic Resource Use by Indigenous Australians in Two Tropical River Catchments: the Fitzroy River and Daly River

Indigenous people of northern Australia make extensive use of wild resources as a source of food, in their art and craft, and for medicinal purposes. These resources are part of a socially and culturally significant landscape. Using data collected from household surveys across two catchments in northern Australia, the Daly River, Northern Territory (NT) and the Fitzroy River, Western Australia (WA), we describe indigenous aquatic resource use patterns. The former is a perennial system with extensive vegetated wetlands that can remain inundated for 4?C5?months, while the latter can cease to flow during the winter dry season (May?COctober) and its floods usually last for weeks. Subsistence strategies depend on seasonal availability of a wide array of aquatic species and are attuned to the life histories and movement patterns of key species, such as Long-necked Turtle (Chelodina rugosa) and Magpie Goose (Anseranas semipalmata). Indigenous households harvested resources from different habitats. Our results show a clear progression from use of the main river channel shortly after the wet season to use of billabongs late in the dry season in the Daly River, and a constant reliance on the main river channel and tributaries in the Fitzroy River. Difference in the main species utilised appears strongly related to habitat use, with four of the five most commonly harvested in the Daly catchment being non-fish species associated with billabong habitats. Commonly harvested species from the Fitzroy catchment included small bodied species used as bait and two popular food species, Black Bream (Hephaestus jenkinsi) and Catfish (Neoarius spp.). Results suggest that indigenous subsistence strategies are vulnerable to changes in the natural systems that provide the ??ecosystem goods,?? particularly annual inundation of floodplains that drives productivity and provides habitat for some key species. Water resource developments, such as river regulation and increased abstraction for irrigated agriculture, could adversely affect a highly valued customary component of the indigenous economies of tropical Australia.