Nutrient concentrations in litterfall from some western conifers with special reference to calcium

Foliar litterfall nutrient concentrations were analysed for selected members of Taxodiaceae and Cupressaceae families andPseudotsuga menziesii for two arboreta in western Oregon and Washington. Nutrient results between arboreta show similar concentrations with the exception of magnesium, which may be the result of historical land use. Nutrient concentrations between species vary considerably.Pseudotsuga menziesii is particularly distinctive from the Cupressaceae and Taxodiaceae by retaining large amounts of phosphorus and potassium. Taxodiaceae is distinctive by high concentration of Mg while Cupressaceae retains calcium, especiallyChamaecyparis nootkatensis. Results suggest that all members of Taxodiaceae and Cupressaceae retain considerably more Ca than Pinaceae in foliar litter.     

Selection for commercial forestry determines global patterns of alien conifer invasions

Question Are the patterns of alien conifer (Pinaceae, Cupressaceae) invasions different between continents, and how is invasion success influenced by commercial forestry practices? Location Temperate and subtropical countries and regions (n = 60) from five continents spanning both hemispheres. Methods We used generalized linear mixed models to test how continent identity, region area and use in commercial forestry affect probabilities of Pinaceae and Cupressaceae species to escape following introduction and cumulative logit regression models to assess how these predictors affect the likelihood that a species becomes naturalized or invasive. Results Sixty Pinaceae of a global total of 232 and 26 Cupressaceae of a total of 142 species have escaped from cultivation across the study regions examined. Average numbers of both alien Pinaceae and Cupressaceae species per region were highest in Oceania, followed by Africa. Moreover, the probability of alien Cupressaceae and Pinaceae becoming naturalized or invasive was particularly high in these two continents. For both families, species used in commercial forestry have a significantly higher probability of escape than those which are only introduced for ornamental or other purposes. In the case of Pinaceae, forestry species also become naturalized or invasive more frequently than non‐forestry species, while no such effect was detectable for Cupressaceae. Conclusions We found that non‐native conifers are more likely to escape from cultivation, naturalize and turn into invasive weeds on the continents of the Southern Hemisphere. In addition to this biogeographic signal, introduction effort strongly determines the behaviour of introduced Pinaceae, and less so, Cupressaceae. A clear conflict exists between the economic benefits of conifer forestry and the risks to the environment from invasions. Future expansion of commercial forestry should address spatial planning to ecosystems vulnerable to invasion and adopt comprehensive risk assessment procedures.     

Sesqui-, di-, and triterpenoids as chemosystematic markers in extant conifers—A review

Chemosystematics is a common tool in systematics and taxonomy of extant plants. Terpenoids have been found to be especially valuable for chemosystematic investigations of conifers. A review of data in the extensive literature revealed some characteristic distribution patterns of sesqui-, di-, and triterpenoids in extant conifer families. The numerous terpenoids can be assigned to approximately 40 sesquiterpenoid, 17 diterpenoid, and only a few triterpenoid structural classes. Some of these terpenoid classes (e.g., cadinanes, humulanes, labdanes, pimaranes) are unspecific and distributed among all conifers. Other structural classes occur in certain clusters of families (e.g., totaranes in Podocarpaceae, Taxodiaceae, and Cupressaceae s.str.) or were restricted to species of only one conifer family (e.g., cuparanes in Cupressaceae s.str.). Cupressaceae s.str. and Taxodiaceae show great similarities in their terpenoid composition (cedranes, thujopsanes) but can be separated by the occurrence of some sesquiterpenoids (cuparanes, widdranes), which were hitherto known only in Cupressaceae s.str. This supports a monophyletic clade of Cupressaceae s.str. within the major Taxodiaceae/Cupressaceae lineage (= Cupressaceae s.l.). Pinaceae differ from the other conifer families because they commonly lack several diterpenoid classes (phenolic abietanes, tetracyclic diterpenoids) and because they contain some distinct sesquiterpenoids (longicyclanes, sativanes), diterpenoids (cembranes), and triterpenoids (serratanes, lanostanes). With the exception of diterpenoid alkaloids (taxanes), Taxaceae contain terpenoids common in the other conifer families. This supports their inclusion as a separate family in the major conifer clade.     

Mapped DNA probes from loblolly pine can be used for restriction fragment length polymorphism mapping in other conifers

A high-density genetic map based on restriction fragment length polymorphisms (RFLPs) is being constructed for loblolly pine (Pinus taeda L.). Consequently, a large number of DNA probes from loblolly pine are potentially available for use in other species. We have used some of these DNA probes to detect RFLPs in 12 conifers and an angiosperm. Thirty complementary DNA and two genomic DNA probes from loblolly pine were hybridized to Southern blots containing DNA from five species of Pinus (P. elliottii, P. lambertiana, P. radiata, P. sylvestris, and P. taeda), one species from each of four other genera of Pinaceae (Abies concolor, Larix laricina, Picea abies, and Pseudotsuga menziesii), one species from each of three other families of Coniferales [Sequoia sempervirens (Taxodiaceae), Torreya californica (Taxaceae) and Calocedrus decurrens (Cupressaceae)], and to one angiosperm species (Populus nigra). Results showed that mapped DNA probes from lobolly pine will cross-hybridize to genomic DNA of other species of Pinus and some other genera of the Pinaceae. Only a small proportion of the probes hybridized to genomic DNA from three other families of the Coniferales and the one angiosperm examined. This study demonstrates that mapped DNA probes from loblolly pine can be used to construct RFLP maps for related species, thus enabling the opportunity for comparative genome mapping in conifers.     

Chemotaxonomic differentiation of conifer families and genera based on the seed oil fatty acid compositions: multivariate analyses

 The fatty acid compositions of seed oils from 34 conifer species, mainly Pinaceae and secondarily Cupressaceae, have been determined by gas-liquid chromatography of the methyl esters. As noted in earlier studies, these oils were characterized by the presence of several Δ5-olefinic acids, i.e., 5,9-18:2, 5,9,12-18:3, 5,9,12,15-18:4, 5,11-20:2, 5,11,14-20:3, and 5,11,14,17-20:4 acids, in addition to the more common saturated, oleic, linoleic and α-linolenic acids. Based on these fatty acid compositions, and on those established in earlier systematic studies (totalling 82 species), we established a chemotaxonomic grouping of the main conifer families, i.e., of the Pinaceae, Taxodiaceae, Cupressaceae, and Taxaceae. This was achieved using multivariate analyses (principal component analysis and discriminant analysis). The fatty acids that discriminate best in this classification are the 5,11,14,17-20:4, 9,12,15-18:3 and 5,9,12-18:3 acids. Moreover, it was possible to differentiate between several genera of the Pinaceae: Pinus (including Tsuga and Pseudotsuga), Abies, Cedrus, and Picea plus Larix, represented quite distinct groups. Other fatty acids such as oleic, linoleic, and 5,9-18:2 acids were also important for this purpose. The fatty acid compositions, and particularly the Δ5-olefinic acid contents of conifer seed oils, may thus be applied to the chemosystematic distinction among conifer families as well as genera of the Pinaceae. Received: 3 January 1997 / Accepted: 17 April 1997     

Partitioning of herbivore hosts across time and food plants promotes diversification in the Megastigmus dorsalis oak gall parasitoid complex

Communities of insect herbivores and their natural enemies are rich and ecologically crucial components of terrestrial biodiversity. Understanding the processes that promote their origin and maintenance is thus of considerable interest. One major proposed mechanism is ecological speciation through host‐associated differentiation (HAD), the divergence of a polyphagous species first into ecological host races and eventually into more specialized daughter species. The rich chalcid parasitoid communities attacking cynipid oak gall wasp hosts are structured by multiple host traits, including food plant taxon, host gall phenology, and gall structure. Here, we ask whether the same traits structure genetic diversity within supposedly generalist parasitoid morphospecies. We use mitochondrial DNA sequences and microsatellite genotypes to quantify HAD for Megastigmus (Bootanomyia) dorsalis, a complex of two apparently generalist cryptic parasitoid species attacking oak galls. Ancient Balkan refugial populations showed phenological separation between the cryptic species, one primarily attacking spring galls, and the other mainly attacking autumn galls. The spring species also contained host races specializing on galls developing on different host‐plant lineages (sections Cerris vs. Quercus) within the oak genus Quercus. These results indicate more significant host‐associated structuring within oak gall parasitoid communities than previously thought and support ecological theory predicting the evolution of specialist lineages within generalist parasitoids. In contrast, UK populations of the autumn cryptic species associated with both native and recently invading oak gall wasps showed no evidence of population differentiation, implying rapid recruitment of native parasitoid populations onto invading hosts, and hence potential for natural biological control. This is of significance given recent rapid range expansion of the economically damaging chestnut gall wasp, Dryocosmus kuriphilus, in Europe.     

杉科、柏科的系统发生分析——来自28S rDNA序列分析的证据

对杉科（Taxodiaceae）与柏科（Cupressaceae s.s.）的28S rRNA基因的部分序列（约630 bp）进行PCR扩增、序列测定和系统发生关系分析,用简约法和邻接法构建的系统发生树基本一致。结果表明,杉科与柏科构成一个单系群,支持将杉科、柏科（Sciadopitys除外）合并为一个科——广义柏科（Cupressaceae sensu lato）的观点。在广义柏科中,Taiwania、Athrotaxis分别形成一支系;Metasequoia、Sequoia、Sequoiadendron关系较近,聚成一支系; Taxodium、Glyptostrobus、Cryptomeria聚成一支系;柏科聚成一支系。这一分析结果与叶绿体基因序列的分析结果相吻合,但是由于28S rRNA基因的进化速率较慢,尚不能分辨上述各个支系之间的系统演化关系。 Abstract:DNA sequences from 28S rDNA were used to assess relationships between and within traditional Taxodiaceae and Cupressaceae s.s.The MP tree and NJ tree generally are similar to one another.The results show that Taxodiaceae and Cupressaceae s.s.form a monophyletic conifer lineage excluding Sciadopitys.In the Taxodiaceae-Cupressaceae s.s.monophyletic group,the Taxodiaceae is paraphyletic.Taxodium,Glyptostrobus and Cryptomeria forming a clade(Taxodioideae),in which Glyptostrobus and Taxodium are closely related and sister to Cryptomeria;Sequoia,Sequoiadendron and Metasequoia are closely related to each other,forming another clade (Sequoioideae),in which Sequoia and Sequoiadendron are closely related and sister to Metasequoia;the seven genera of Cupressaceae s.s.are found to be closely related to form a monophyletic lineage (Cupressoideae).These results are basically similar to analyses from chloroplast gene data.But the relationships among Taiwania,Sequoioideae,Taxodioideae,and Cupressoideae remain unclear because of the slow evolution rate of 28S rDNA,which might best be answered by sequencing more rapidly evolving nuclear genes.     

Phylogenetic relationships in Taxodiaceae and Cupressaceae sensu stricto based on matK gene, chlL gene, trnL-trnF IGS region, and trnL intron sequences

Nucleotide sequences from four chloroplast genes, the matK, chlL, intergenic spacer (IGS) region between trnL and trnF, and an intron of trnL, were determined from all species of Taxodiaceae and five species of Cupressaceae sensu stricto (s.s.). Phylogenetic trees were constructed using the maximum parsimony and the neighbor-joining methods with Cunninghamia as an outgroup. These analyses provided greater resolution of relationships among genera and higher bootstrap supports for clades compared to previous analyses. Results indicate that Taiwania diverged first, and then Athrotaxis diverged from the remaining genera. Metasequoia, Sequoia, and Sequoiadendron form a clade. Taxodium and Glyptostrobus form a clade, which is the sister to Cryptomeria. Cupressaceae s.s. are derived from within Taxodiaceae, being the most closely related to the Cryptomeria/Taxodium/Glyptostrobus clade. These relationships are consistent with previous morphological groupings and the analyses of molecular data. In addition, we found acceleration of evolutionary rates in Cupressaceae s.s. Possible causes for the acceleration are discussed.     

Turonian Pinaceae of the Raritan Formation, New Jersey

 Fossil vegetative and reproductive structures from deposits of the Raritan Formation in New Jersey (Turonian, Upper Cretaceous, ∼90 MYBP) include ferns, gymnosperms, and angiosperms. Gymnosperms collected from this formation have been known since the beginning of the 20th century. Fossil leaves, wood and seed cones have been are identified as belonging to the Cupressaceae, Pinaceae, and Taxodiaceae. In the present contribution, we describe a series of fossil dwarf shoots, leaves and a pollen cone belonging to the family Pinaceae. Fossils are charcoalified with preserved three-dimensional structure and excellent cellular detail. The dwarf shoots are assigned to a new species Prepinus crossmanensis sp. nov. and to the previously described Pinus quinquefolia Jeffrey. The new species Prepinus crossmanensis differs in size, shape, presence of hypodermis, sclerenchyma and stomata in the cataphylls, and number and shape of needle leaves from previously known species. Also, isolated leaves were found that were assigned to the new species, Prepinus raritanensis sp. nov. The new species is differentiated by the size and shape of stomata, the presence of number of layers of the hypodermis; and the cell-shape and number of layers of the mesophyll and transfusion tissue. A previously undescribed male cone, Amboystrobus cretacicum gen. and sp. nov., has an axis with spirally attached microsporophylls, each bearing two abaxial ovoid microsporangia. The pollen grains are monosulcate and bisaccate (eusaccate), with an elliptical corpus, granulate exine sculpture, and honeycomb-like wall structure. Received March 21, 2000 Accepted November 13, 2000     

Structure and affinities of the petrified plants from the cretaceous of Northern Japan and Saghalien XIIIYubaristrobus gen. nov., A new Taxodiaceous cone from the upper cretaceous of Hokkaido

Yubaristrobus is a new genus of the Taxodiaceae based on a permineralized seed cone from the Upper Cretaceous of Hokkaido. The type species,Y. nakajimae sp. nov., is characterized by peltate bract-scale complexes consisting of a completely-fused bract and scale. The bract-scale complexes are spirally arranged as in most taxodiaceous genera. Their vascular arrangement is specialized and unique in the Taxodiaceae and suggests a relationship with the Cupressaceae. Consecutive number from the previous paper (Ohsawa, M. Nishida and H. Nishida, 1992b).     

AGAMOUS subfamily MADS-box genes and the evolution of seed cone morphology in Cupressaceae and Taxodiaceae

In this comparative developmental genetics study, we test hypotheses based on fossil and morphological data on reproductive organ morphology and evolution in conifers--specifically, the ovule-bearing organ in Cupressaceae and Taxodiaceae. Genes homologous to the Arabidopsis gene AGAMOUS are expressed in ovuliferous scales of spruces (Picea) throughout development. Previous studies have shown that the AGAMOUS subfamily of MADS-box genes predates the split between angiosperms and gymnosperms, and that these genes have in part conserved functions in reproductive development among seed plants, especially in the specification of identity of the ovule-bearing organs. These data indicate that their expression in conifer families other than Pinaceae might be used as markers for organs homologous to the Pinaceae ovuliferous scale. Here we have isolated putative AGAMOUS orthologs from Cupressaceae and Taxodiaceae and analyzed their expression pattern in seed cones to test for the presence of morphological homologs of ovuliferous scales. Our results were not congruent with the hypothesis that the tooth of the Cryptomeria seed cone is homologous to the Picea ovuliferous scale. Likewise, the hypothesis that the bracts of Thujopsis and Juniperus contain fused ovuliferous scales was not supported. However, we found expression of AGAMOUS homologs in the sterile bracts of Cupressaceae seed cones at late developmental stages. This expression probably represents a novel gene function in these conifer families, since no corresponding expression has been identified in Pinaceae. Our study suggests that the evolutionary history of modern conifer cones is more diverse than previously thought.     

Speciation by host-switching in pinyon Cinara (Insecta: Hemiptera: Aphididae)

Parasite-host cospeciation has received much attention as an important mechanism in the diversification of phytophagous insects. However, studies have shown that for certain taxa, it is not host fidelity but host-switching that plays the critical role in speciation. Cinara are aphids (Insecta: Hemiptera: Aphididae: Lachninae) that feed exclusively on the woody parts of conifers of the Cupressaceae and Pinaceae. They are unusual aphids because most Pinaceae play host to several species of Cinara. The aphids show relatively strong host fidelity, and as a consequence historically have been treated based on the taxonomy of their hosts. The historical paradigm of aphid evolution implies that Cinara species have radiated to different parts of the same host species and/or speciated with their host. Using mitochondrial cytochrome oxidase 1 and nuclear elongation factor 1-alpha DNA sequences, we performed molecular phylogenetic analysis of Cinara species, concentrating on those associated with pinyon pines in the southwestern USA. We determined that switching hosts has played a key role in the speciation of the genus, reflected in the polyphyly of pinyon-feeding Cinara. Furthermore, species sharing a common feeding site on different hosts were more closely related to each other than to those sharing the same host but at different feeding sites, suggesting that feeding site fidelity plays a more important role in speciation than does host fidelity in general. This study also elucidated the primary taxonomy of various species: it suggested that Cinara rustica Hottes is a junior synonym of C. edulis (Wilson) and that C. wahtolca Hottes represents two species on the two different pinyon pine species, Pinus edulis Englem. and P. monophylla Torr. & Frem.     

Anatomy and relationships of petrified seed cones of the Cupressaceae,Taxodiaceae, and Sciadopityaceae

Morphological features and the affinities of petrified seed cones of the Taxodiaceae, Cupressaceae, and Sciadopityaceae are reevaluated. TheCunninghamia-like plants are the earliest record of the families.Parataiwania explains the divergence ofTaiwania from aCunninghamia-like ancestral form by loss of ovuliferous scale and sclerenchyma.Sequoia-like allies probably diverged from a Cretaceous transitional plant likeYezosequoia and are most diversified in the Late Cretaceous.Yubaristrobus andArchicupressus suggest monophyly ofTaxodium and its allied genera of the Taxodiaceae and the Cupressaceae. The Cupressaceae may be derived from a taxodiaceous plant with orthotropous seeds, acquiring a reniform arrangement of the vascular bundles of the bract-scale complex, decussate or whorled phyllotaxis, and spherical cones consisting of a small number of bract-scale complexes. The Cretaceous fossils of the Sciadopityaceae suggest the ancient origin of the family.     

Phylogeny of Taxaceae and Cephalotaxaceae Genera Inferred from Chloroplast matK Gene and Nuclear rDNA ITS Region

Phylogeny of the Taxaceae genera and the monotypic family Cephalotaxaceae has been extraordinarily controversial. In this paper chloroplast matK genes and nuclear ITS sequences were determined for all six genera of the two families and representatives of other conifer families. Analysis using either the nonsynonymous sites or the deduced amino acid sequences of matK genes strongly indicates that taxad genera and Cephalotaxaceae are monophyletic, with the Taxodiaceae/Cupressaceae clade as their sister group. Cephalotaxus is basal to the taxad genera, among which two clades, Torreya/Amentotaxus and Taxus/Pseudotaxus/Austrotaxus, are resolved. They correspond to Janchen's two tribes, Torreyeae and Taxeae. In Taxeae, Austrotaxus is the first to branch off. Analyses of the nuclear ITS sequence data corroborated the topology of the matK gene tree. These results refute the views that Cephalotaxaceae has no alliance with Taxaceae and that Austrotaxus and Amentotaxus should be excluded from the Taxaceae. We estimated the divergence time between the Taxodiaceae/Cupressaceae and the Cephalotaxaceae/Taxaceae clades to be 192–230 Myr ago and the divergence time between taxads and Cephalotaxus to be 149–179 Myr ago. Soon after the latter divergence event, within 6–8 Myr, the two taxad tribes originated. In conclusion, our data do not support Florin's claim that taxads could be traced to Devonian psilophytes (359–395 Myr ago).     

Molecular phytogeny of conifers using RFLP analysis of PCR-amplified specific chloroplast genes

We investigated the molecular phylogeny of conifers using restriction endonuclease fragment length polymorphism of six polymerase chain reaction-amplified chloroplast genes — frxC, rbcL, psbA, psbD, trnK, and 16S. We detected 227 total site changes among species, representing 23, 26, 38, 48, 67, and 25 site changes in frxC, psbA, psbD, rbcL, trnK and 16S, respectively. The mean nucleotide substitution was 10.75% (SD 0.573) among species in five families. Forty maximally parsimonious trees were obtained using the Wagner parsimony method, and a 50% majority-rule consensus tree was obtained from them. Data analysis produced similar basic patterns when both the Wagner parsimony and the neighbor-joining methods were applied, and the main lineages were clearly separated. Taxaceae and Cephalotaxaceae species were used as the out-groups when applying Wagner parsimony methods. With the Wagner method, the consistency index was 0.510, the retention index was 0.879, and tree length was 435 steps. Our results indicated that Cupressaceae and Taxodiaceae are closely related families and that Sciadopitys verticillata is the basal lineage of Cupressaceae and Taxodiaceae. The neighbor-joining tree is similar to the 50% majority-rule consensus of the 40 Wagner parsimony trees except for the position of Keteleeria daversifolia, the Picea and Cedrus group, and the divergence within Cupressaceae.     

Macroecological drivers of alien conifer naturalizations worldwide

Understanding the factors that drive the global distribution of alien species is a pivotal issue in invasion biology. Here, we used data on naturalized conifers (Pinaceae, Cupressaceae) from sixty temperate and subtropical regions and five continents to test how environmental and socio‐economic conditions of recipient areas as well as introduction efforts affect naturalization probabilities. We collated 18 predictor variables for each region describing environmental, biogeographic and socio‐economic conditions as well as a measure of the macro‐climatic match with the species' native ranges, and the extent to which alien conifers are used in commercial forestry. Naturalization probabilities across all species and regions were then related to these predictor variables by means of generalized linear mixed models. For both Pinaceae and Cupressaceae, naturalization probabilities were generally higher in the Southern Hemisphere, and increased with indicators of habitat diversity of the recipient region. The match in macro‐climatic conditions between the native and introduced regions was a significant predictor of conifer naturalization, but socio‐economic variables were less powerful predictors. Only for Cupressaceae did a socio‐economic variable (human population density) affect naturalization probabilities. Key attributes facilitating naturalization were related to introduction effort. Moreover, usage in commercial forestry generally fostered naturalization, although the actual size of alien conifer plantations in a region was only correlated with the naturalization of Pinaceae. Our results suggest that climate matching, habitat diversity and introduction effort co‐determine the probability of naturalization, which additionally, is modulated by biogeographic features of the recipient area, such as incidence of natural enemies or competitors. To date, the most widely used tools for invasive plant risk assessment only account for climate match and rarely factor in other attributes of the recipient environment. Future tools should additionally consider biotic environment and introduction effort if risk assessment is to be effective.     

The evolution of gymnosperms redrawn by phytochrome genes: the Gnetatae appear at the base of the gymnosperms

Gymnosperms possess two to four phytochrome types which apparently are the result of successive gene duplications in the genomes of their common ancestors. Phytochromes are nuclear-encoded proteins whose genes, contrary to chloroplast, mitochondrion, and rRNA genes, have hitherto rarely been used to examine gymnosperm phylogenies. Since the individual phytochrome gene types implied phylogenies that were not completely congruent to one another, conflicting branching orders were sorted by the number of gene lineages present in a taxon. The Gnetatae (two gene types) branched at the base of all gymnosperms, a position supported by bootstrap sampling (distance and character state trees, maximum likelihood). The Gnetatae were followed by Ginkgo, Cycadatae, and Pinaceae (three gene types) and the remaining conifers (four gene types). Therefore, in phytochrome trees, the most ancient branch of the conifers (Pinatae) seems to be the Pinaceae. The next split appears to have separated Araucariaceae plus Podocarpaceae from the Taxaceae/Taxodiaceae/Cupressaceae group. Structural arrangements in the plastid genomes (Raubeson and Jansen 1992) corroborate the finding that there is no close connection between Pinaceae and Gnetatae as suggested by some publications. The analyses are based on 60 phytochrome genes (579 positions in an alignment of PCR fragments) from 28 species. According to rough divergence time estimates, the last common ancestor of gymnosperms and angiosperms is likely to have existed in the Carboniferous.     

Comparative Analyses and Phylogenetic Relationships between <i>Cryptomeria fortunei</i> and Related Species Based on Complete Chloroplast Genomes

Cryptomeria fortunei (Chinese cedar) is a highly adaptable woody species and one of the main forest plantation trees in subtropical high-altitude areas in China. However, there are few studies on its chloroplast (cp) genome. In this study, the complete cp genome of C. fortunei was sequenced and evaluated via comparative analyses with those of related species (formerly the Taxodiaceae) in Cupressaceae. The C. fortunei cp genome was 131,580 bp in length, and the GC content of the whole genome was 35.38%. It lost one relevant large inverted repeat and contained 114 unique genes, including 82 protein-coding genes, 28 tRNAs and 4 rRNAs. The relative synonymous codon usage (RSCU) of codons ending with A/U was more than twice that of codons ending with G/C. Thirty long repeat structures (LRSs) and 213 simple sequence repeat (SSR) loci were detected in the C. fortunei cp genome. Comparative analyses of 10 cp genomes revealed that substantial rearrangements occurred in the gene organization. Additionally, 6 cp hotspot regions (trnS-GGA, ycf1, trnP-GGG, trnC-GCA, psbZ and accD) were identified, and 4 genes (petL, psbM, rpl22 and psaM) had likely underwent positive selection. Phylogenetic analysis showed that Cupressaceae, Taxaceae and Cephalotaxaceae clustered to form a clade and that C. fortunei was most closely related to C. japonica (Japanese cedar), C. japonica cv. Wogon Hort and Taxodium distichum (baldcypress). These results provide references for future studies of population genetics, phylogenetic status and molecular markers among Cupressaceae species and for the cultivation of improved varieties.     

Long-chain polyprenols in gymnosperm plants

Over 100 species of gymnosperm plants were checked for the presence of long chain polyprenols. Poly-cis long chain prenols, mainly as acetates, were found in green needles of about 60 species. In Cycadopsida either prenol-18 or prenol-20 were the main components of the natural polyprenol mixture. In Coniferopsida either a single polyprenol family was present like in all species of Pinaceae, or polyprenols consisted of two families differing in the size of polyprenol molecules: one family in which prenol-17 was the dominating component, and the other family of prenol-23. These complex mixtures of polyprenols were present in Araucariaceae, Cupressaceae, Taxodiaceae and also in Taxopsida. Seasonal variations were observed in the polyprenol content in green leaves.