Molecular pharming — VLPs made in plants

1. Download : Download high-res image (163KB)
2. Download : Download full-size image

     

Dynamics in the microbial cytome — single cell analytics in natural systems

1. Download : Download high-res image (214KB)
2. Download : Download full-size image

     

Nitrogen-Vacancy color center in diamond — emerging nanoscale applications in bioimaging and biosensing

1. Download : Download high-res image (200KB)
2. Download : Download full-size image

     

IF<Subscript>1</Subscript> distribution in HepG2 cells in relation to ecto–F<Subscript>0</Subscript>F<Subscript>1</Subscript>ATPsynthase and calmodulin

F₀F₁ATPsynthase is now known to be expressed as a plasma membrane receptor for several extracellular ligands. On hepatocytes, ecto–F₀F₁ATPsynthase binds apoA–I and triggers HDL endocytosis concomitant with ATP hydrolysis. Considering that inhibitor protein IF₁ was shown to regulate the hydrolytic activity of ecto–F₀F₁ATPsynthase and to interact with calmodulin (CaM) in vitro, we investigated the subcellular distributions of IF₁, calmodulin (CaM), OSCP and β subunits of F₀F₁ATPsynthase in HepG2 cells. Using immunofluorescence and Western blotting, we found that around 50% of total cellular IF₁ is localized outside mitochondria, a relevant amount of which is associated to the plasma membrane where we also found Ca²⁺–CaM, OSCP and β. Confocal microscopy showed that IF₁ colocalized with Ca²⁺–CaM on plasma membrane but not in mitochondria, suggesting that Ca²⁺–CaM may modulate the cell surface availability of IF₁ and thus its ability to inhibit ATP hydrolysis by ecto–F₀F₁ATPsynthase. These observations support a hypothesis that the IF₁–Ca²⁺–CaM complex, forming on plasma membrane, functions in the cellular regulation of HDL endocytosis by hepatocytes.     

The role of CS<Subscript>2</Subscript> in CS<Subscript>2</Subscript>/NMP mixed solvent in weakening the hydrogen bond of OH–N in coal: a DFT investigation

The interaction processes of trace amounts of N-methyl-2-pyrrolidinone (NMP), CS₂/NMP (1:1 by volume) and pure NMP solvent with the hydrogen bond of OH?N in coal were constructed and simulated by density functional theory methods. The distances and bond orders between the main related atoms, and the hydrogen bond energy of OH?N were calculated. The calculated results show that pure NMP solvent does not weaken the hydrogen bond of OH?N in coal. However, trace amounts of NMP and CS₂/NMP (1:1 by volume) have a strong capacity to weaken the hydrogen bond of OH?N in coal. The H2–N3 distances are elongated from 1.87 Å to 3.80 Å and 3.44 Å, the bond orders of H2–N3 all disappear, and the corresponding hydrogen bond energies of OH?N in coal decrease from 45.72 kJ mol^?1 to 7.06 and 11.24 kJ mol^?1, respectively. These results show that CS₂ added to pure NMP solvent plays an important role in releasing the original capacity of NMP to weaken the hydrogen bond of OH?N in coal, in agreement with experimental observations.     

Somewhat in control — the role of transcription in regulating microbial metabolic fluxes

1. Download : Download high-res image (166KB)
2. Download : Download full-size image

     

Spatial variation in flux, δ<Superscript>13</Superscript>C and δ<Superscript>2</Superscript>H of methane in a small Arctic lake with fringing wetland in western Greenland

Small lakes in northern latitudes represent a significant source of CH₄ to the atmosphere that is predicted to increase with warming in the Arctic. Yet, whole-lake CH₄ budgets are lacking as are measurements of δ¹³C-CH₄ and δ²H-CH₄. In this study, we quantify spatial variability of diffusive and ebullitive fluxes of CH₄ and corresponding δ¹³C-CH₄ and δ²H-CH₄ in a small, Arctic lake system with fringing wetland in southwestern Greenland during summer. Net CH₄ flux was highly variable, ranging from an average flux of 7 mg CH₄ m^?2 d^?1 in the deep-water zone to 154 mg CH₄ m^?2 d^?1 along the lake margin. Diffusive flux accounted for ~8.5 % of mean net CH₄ flux, with plant-mediated and ebullitive flux accounting for the balance of the total net flux. Methane content of emitted ebullition was low (mean ± SD 10 ± 17 %) compared to previous studies from boreal lakes and wetlands. Isotopic composition of net CH₄ emissions varied widely throughout the system, with δ¹³C-CH₄ ranging from ?66.2 to ?55.5 ‰, and δ²H-CH₄ ranging from ?345 to ?258 ‰. Carbon isotope composition of CH₄ in ebullitive flux showed wider variation compared to net flux, ranging from ?69.2 to ?49.2 ‰. Dissolved CH₄ concentrations were highest in the sediment and decreased up the water column. Higher concentrations of CH₄ in the hypoxic deep water coincided with decreasing dissolved O₂ concentrations, while methanotrophic oxidation dominated in the epilimnion based upon decreasing concentrations and increasing values of δ¹³C-CH₄ and δ²H-CH₄. The most depleted ¹³C- and ²H-isotopic values were observed in profundal bottom waters and in subsurface profundal sediments. Based upon paired δ¹³C and δ²H observations of CH₄, acetate fermentation was likely the dominant production pathway throughout the system. However, isotopic ratios of CH₄ in deeper sediments were consistent with mixing/transition between CH₄ production pathways, indicating a higher contribution of the CO₂ reduction pathway. The large spatial variability in fluxes of CH₄ and in isotopic composition of CH₄ throughout a single lake system indicates that the underlying mechanisms controlling CH₄ cycling (production, consumption and transport) are spatially heterogeneous. Net flux along the lake margin dominated whole-lake flux, suggesting the nearshore littoral area dominates CH₄ emissions in these systems. Future studies of whole-lake CH₄ budgets should consider this significant spatial heterogeneity.     

Genotype × region and genotype × production level interactions in Holstein cows

The identification of the presence of genotype by environment interaction effects on important traits in Holstein cattle allows for the use of international genetic evaluations and a more efficient design of regional genetic evaluation programmes. The aim of this study was to determine the genotype × environment interaction effects in Chilean Holstein dairy cattle through the analysis of records corresponding to calvings between 1998 and 2015. Herds were classified in the central and southern regions of Chile based on herd location as well as by high and low levels of production environments based on the fat plus protein yield averages per herd within each region. The central region has a Mediterranean climate and a confined production system while the southern region has a humid temperate climate and a production system based on grazing with supplementation. Traits studied were milk yield (MY), fat yield (FY), protein yield (PY), fat content (FC) and protein content (PC) by lactation, age at first calving (AFC) and calving interval (CI). Several four-trait mixed animal models were applied to environmental category data as different traits, which included herd-year-calving season (herd-year-birth season for AFC) and lactation number as fixed effects, and animal additive genetic, sire-herd, permanent environment and residual effects as random effects. Genetic correlations (r_g) for MY, FY, FC, PC and CI were found to decrease as differences between environmental categories increased. The r_g between the most extreme environmental categories considered in this study for AFC (0.26) was the only one found statistically lower than 0.60. Genetic correlation values statistically lower than 0.80 (P < 0.05) were observed for AFC, CI, MY, FY and PY between some environmental categories. If separate genetic evaluations are adopted as practical criteria when the value of r_g is lower than 0.60, the consequence of improving a multi-trait economic breeding objective in this population is likely to be small unless extreme environmental categories are considered. However, a moderate decrease in selection response and re-ranking of selection candidates is expected for AFC, CI and yield traits when selection is performed in different environmental conditions. Genotype × environment interaction effects involving production systems in a Mediterranean climate and confinement vs. Temperate Oceanic climate and grazing with supplementation, and between two fat plus protein yield level categories within each environment, were at most moderate for the studied traits.     

Variation in leaf and soil δ<Superscript>15</Superscript>N in diverse tree species in a lowland dipterocarp rainforest,Malaysia

Key message

Large variations in leaf δ ¹⁵ N in Bornean tropical rainforest trees may indicate that various tropical species have species-specific strategy for nitrogen uptake under low soil nutrient conditions, including root symbiotic microorganisms such as ectomycorrhiza.

Abstract

Lowland tropical rainforests in Southeast Asia are characterized by high species diversity despite limited soil nutrient conditions. The plant nitrogen isotope ratio (δ¹⁵N) reflects plant uptake of soil nitrogen. We analyzed δ¹⁵N values and nitrogen content (N %) in leaves and roots of 108 woody species with different types of symbiotic microorganisms, of different life forms (emergent, canopy, sub-canopy, understory, and canopy gap species), and from different families in a Bornean lowland dipterocarp forest to gain more insight into the diversity of nitrogen uptake strategy in the rhizosphere. Leaf δ¹⁵N values in the species studied varied largely from ?7.2 to 5.0 ‰, which is comparable to the values of known Asian trees including temperate, sub-tropical, and tropical mountain forests. Leaf δ¹⁵N also varied significantly among both life forms and families, though the phylogenetically independent contrast (PIC) relationships were not statistically significant among life form, family, and symbiotic types. Some families showed specific leaf δ¹⁵N values; Dipterocarpaceae, the dominant family in the canopy layer with symbiotic ectomycorrhiza in Southeast Asia, had small intraspecific variation and higher leaf δ¹⁵N values (0.03 ‰) compared with species exhibiting arbuscular mycorrhiza, whereas several families such as Burseraceae, Euphorbiaceae, and Myrtaceae showed large interspecific variation in leaf δ¹⁵N (e.g., from ?7.2 to 5.0 ‰ in Euphorbiaceae). These variations suggest that tropical species may have family- or species-specific strategy, such as root symbiotic microorganisms, for nitrogen uptake under low-nutrient conditions in tropical rainforests in Southeast Asia.

     

β-adrenergic modulation of <Emphasis Type="Italic">in vivo</Emphasis> long-term potentiation in area CA1 and its role in spatial learning in rats

Activation of β-adrenoceptors in area CA1 of the hippocampus facilitates in vitro long-term potentiation (LTP) in this region. However, it is unclear if in vivo LTP in area CA1 and hippocampus-dependent learning are subjected to β-adrenergic regulation. To address this question, we investigated the effects of the β-adrenergic agonist L-isoproterenol or antagonist DL-propranolol on in vivo LTP of area CA1 and the spatial learning in Morris water maze. In the presence of L-isoproterenol (through local infusion into area CA1), the theta-pulse stimulation with the parameter of 10 Hz, 150 pulses/train, 1 train, a frequency weakly modifying synaptic strength, induced a robust LTP, and this effect was blocked when DL-propranolol was co-administered. By contrast, the theta-pulse stimulation with the parameter of 5 Hz, 150 pulses/train, 3 trains, a frequency strongly modifying synaptic strength, induced a significantly smaller LTP when DL-propranolol was administered into area CA1. Accordingly, DL-propranolol impaired the spatial learning in the water maze when infused into area CA1 20 min pretraining. Compared with control rats, the DL-propranolol-treated rats showed significantly slower learning in the water maze and subsequently exhibited poor memory retention at 24-h test. These results suggest that β-adrenoceptors in area CA1 are involved in regulating in vivo synaptic plasticity of this area and are important for spatial learning.     

Somatic Embryogenesis and in vitro Flowering in <Emphasis Type="Italic">Saposhnikovia divaricata</Emphasis>

Efficient somatic embryogenesis (SE) and in vitro flowering and fruiting were achieved in Saposhnikovia divaricata (Turcz.) Schischk. Friable embryogenic callus developed from the root, internode, and leaf explants on Murashige and Skoog medium (MS) with 2.26 μM 2,4-dichlorophenoxyacetic acid (2,4-D), and subsequently developed into somatic embryos on MS medium containing 4–5% sucrose, 1.74 μM naphthaleneacetic acid (NAA), 4.44 μM 6-benzylaminopurine (BA), and 1.90 μM abscisic acid (ABA). Then the mature embryos were separated and transferred onto MS with 3% sucrose and 0.6% agar for further development and conversion to plantlets. In vitro flowering and fruiting were obtained when the subcultures were carried out for over 15 months. Paclobutrazol (PP333) or ethephon (ETH) at low levels promoted flowering significantly. Also, abnormal rootless somatic embryos of S. divaricata could form flowers and fruits in vitro.     

Charge ordering in the metal–insulator transition of V-doped CrO<Subscript>2</Subscript> in the rutile structure

Electronic, magnetic, and structural properties of pure and V-doped CrO₂ were extensively investigated utilizing density functional theory. Usually, pure CrO₂ is a half-metallic ferromagnet with conductive spin majority species and insulating spin minority species. This system remains in its half-metallic ferromagnetic phase even at 50% V-substitution for Cr within the crystal. The V-substituted compound Cr_0.5V_0.5O₂ encounters metal–insulator transition upon the application of on-site Coulomb repulsion U?=?7 eV preserving its ferromagnetism in the insulating phase. It is revealed in this study that Cr³⁺-V⁵⁺ charge ordering accompanied by the transfer of the single V-3d electron to the Cr-3dt_2g orbitals triggers metal–insulator transition in Cr_0.5V_0.5O₂. The ferromagnetism of Cr_0.5V_0.5O₂ in the insulating phase arises predominantly due to strong Hund’s coupling between the occupied electrons in the Cr-t_2g states. Besides this, the ferromagnetic Curie temperature (T_c) decreases significantly due to V-substitution. Interestingly, a structural distortion is observed due to tilting of CrO₆ or VO₆ octahedra across the metal–insulator transition of Cr_0.5V_0.5O₂.

Open image in new window

Graphical abstract The V-doped compound Cr_0.5V_0.5O₂ is found a half-metallic ferromagnet (HMF) in the absence of on-site Coulomb interaction (U). This HMF behavor maintains up to U?=?6 eV. Eventually, this system encounters metal-insulator transition (MIT) upon the application of U?=?7 eV with a band gap of E_g ~ 0.31 eV. Nevertheless, applications of higher U widen the band gaps. In this figure, calculated total (black), Cr-3d (red), V-3d (violet), and O-2p (blue) DOS of Cr_0.5V_0.5O₂ for U?=?8 eV are illustrated. The system is insulating with a band gap of E_g ~ 0.7 eV.

     

Cracks in the shell—zooming in on eggshell formation in the human parasite <Emphasis Type="Italic">Schistosoma mansoni</Emphasis>

Schistosomiasis, currently the second most common parasitic disease of humans in tropical regions is caused by the eggs of trematode worms of the genus Schistosoma. Understanding egg formation and specifically the synthesis of the eggshell comprises, consequently, a promising starting point to cure and prevent the disease. To shed light on the genetics of the latter process, we analysed the three known S. mansoni eggshell proteins P14, P19 and P48 against the background of the species inferred proteome and of eggshell proteins identified in other trematode species. Our results suggest that eggshell formation in Schistosoma involves a multitude of different proteins organised in currently three distinct protein families (P14, P48 and P34 eggshell protein family). The first two families are of simple structure. Their respective members share a substantial degree of sequence similarity and are, to date, observed only in the genus Schistosoma. In contrast, the P34 family of eggshell proteins is complex. Its in part highly diverged members share only a conserved motif of 67-aa length on average and are detected in various trematode species. The resulting widespread occurrence of this protein motif suggests an important role during eggshell formation in trematodes. Screening more than 7,000 putative proteins of S. mansoni, we could identify six new members of the P34 protein family that are likely to be involved in eggshell formation in this species.Electronic Supplementary Material Supplementary material is available for this article at .     

Effective and ecological half-lives of <Superscript>137</Superscript>Cs in cow’s milk in alpine agriculture

In the mountainous “Hohe Tauern” region of Salzburg (Austria), milk samples have been collected in a long-term montitoring programme since 1988, at eight alpine sites used for extensive, seasonal stock farming. For this alpine environment with its acidic soils developed on silicate bedrock, high soil-to-plant transfer factors and long-lasting ¹³⁷Cs contamination levels in milk—the main product of seasonal agriculture at elevated altitudes—are characteristic features. The decrease in ¹³⁷Cs concentration in milk measured since 1988 turned out to be best described by one or two effective half-lives. For the period from 1993 to 2007, which can be modelled with one effective half-life for all sites, effective half-lives between 3.7 and 15.0 years (ecological half-lives: 4.3–29.9 years) were obtained. The effective half-life increases with mean altitude of the investigated graze pastures, probably due to reduced migration velocities of ¹³⁷Cs and low ¹³⁷Cs half-value depths of a few centimetres in the soil.