Growth and mortality of the introduced Lake Tanganyika clupeid, Limnothrissa miodon, in Lake Kariba

The growth and mortality of the small clupeid fish Limnothrissa miodon were studied in Lake Kariba, a large, man-made lake in central Africa. Growth could be described by the von Bertalanffy equation l_t = 74.2 (1—e^{−0.254( t +0.07)}) where length ( l ) is expressed in millimetres and time ( t ) in months. The monthly rates of mortality were high and increasing under intensive fishing; in 1983 the total mortality rate Z =1.15 and natural mortality M =0.7. Limnothrissa appears to be stunted in the man-made lakes where it occurs (Kariba and Cahora Bassa) where it grows at a faster rate but to a smaller size than it does in natural lakes (Kivu and Tanganyika). Various hypotheses to account for this are discussed and it was concluded that this is an adaptation to the relatively unstable conditions found in the man-made lakes.     

Biology of the African clupeid Limnothrissa miodon with reference to its small size in artificial lakes

Summary Limnothrissa miodon is a clupeid from Lake Tanganyika which has been introduced to Lakes Kivu and Kariba and which invaded Lake Cahora Bassa. These lakes differ considerably from one another but the biology of Limnothrissa is similar in many respects in all of them. Similarities include its feeding and breeding biology, whilst its populations fluctuate, on both an annual and a seasonal basis, in relation to environmental changes. The major differences between the lakes concern the size to which Limnothrissa grows. Their average length in the two natural lakes, Lakes Tanganyika and Kivu, is about twice the average length in the two artificial lakes, Lakes Kariba and Cahora Bassa. This in turn affects their age of maturity and they breed during their first year in the reservoirs but during their second in the natural lakes. Their growth rates and performance are comparable up to about 6 months of age and the difference in their size seems to be due to high mortality in the artificial lakes where few Limnothrissa survive for more than a year. Possible explanations for their small size include the genetic composition of the original introduction and the unpredictability of the environment. Neither of these explanations is supported by evidence at present. Deficiencies in the available food and the effects of intense predation are probably the most likely causes. In both natural lakes, Limnothrissa are predatory or cannibalistic from 100 mm in length and 12 months in age, and fish in their diet may enable them to survive into their second year. The fish in Lakes Kariba and Cahora Bassa, in contrast, are neither predatory nor cannibalistic to any degree. There are no predatory fish species in Lake Kivu but there is a diverse community of pelagic piscivores in Lake Tanganyika which tends to contradict the predation hypothesis. However, the position of Limnothrissa in the reservoirs probably resembles that occupied in Lake Tanganyika by Stolothrissa which is also a small, annual species. The significance of this phenomenon is that Limnothrissa can maintain a high biomass and productivity in the face of intense predation. This trait may be of importance to fisheries management because it means that their yield can be greatly increased.     

Structural genomic variation leads to genetic differentiation in Lake Tanganyika's sardines

Identifying patterns in genetic structure and the genetic basis of ecological adaptation is a core goal of evolutionary biology and can inform the management and conservation of species that are vulnerable to population declines exacerbated by climate change. We used reduced‐representation genomic sequencing methods to gain a better understanding of genetic structure among and within populations of Lake Tanganyika's two sardine species, Limnothrissa miodon and Stolothrissa tanganicae. Samples of these ecologically and economically important species were collected across the length of Lake Tanganyika, as well as from nearby Lake Kivu, where L. miodon was introduced in 1959. Our results reveal differentiation within both S. tanganicae and L. miodon that is not explained by geography. Instead, this genetic differentiation is due to the presence of large sex‐specific regions in the genomes of both species, but involving different polymorphic sites in each species. Our results therefore indicate rapidly evolving XY sex determination in the two species. Additionally, we found evidence of a large chromosomal rearrangement in L. miodon, creating two homokaryotypes and one heterokaryotype. We found all karyotypes throughout Lake Tanganyika, but the frequencies vary along a north–south gradient and differ substantially in the introduced Lake Kivu population. We do not find evidence for significant isolation by distance, even over the hundreds of kilometres covered by our sampling, but we do find shallow population structure.     

长江中下游不同地理种群鳜遗传结构研究

以长江、通江湖泊(洞庭湖、鄱阳湖)、陆封型湖泊(牛山湖、涨度湖、汤逊湖、肖四海湖)不同水体鳜为研究材料,利用微卫星遗传标记对其种群遗传结构进行分析,结果表明:由期望杂合度(He)和多态信息含量指数(PIC)检测的遗传多样性由大到小的顺序为:长江、通江湖泊群体>无放流陆封型湖泊群体>放流的陆封型湖泊群体,并且发现一些稀有等位基因位点在陆封型湖泊鳜群体中消失;由杂合度检验可以看出,所有群体在绝大多数位点都呈现杂合过剩现象,经过哈代-温伯格平衡检验,显示均显著偏离哈代-温伯格平衡(Pst为0.2727,显示群体间已发生较大遗传分化,其变异主要体现在通江湖泊和陆封型湖泊之间,同时由于陆封型湖泊之间放流管理模式的不同,亦会产生中度分化。研究结果表明,江湖阻隔是造成定居性鱼类鳜种群间遗传分化的重要原因之一。       

High prevalence of non-synonymous substitutions in mtDNA of cichlid fishes from Lake Victoria

When a population size is reduced, genetic drift may fix slightly deleterious mutations, and an increase in nonsynonymous substitution is expected. It has been suggested that past aridity has seriously affected and decreased the populations of cichlid fishes in Lake Victoria, while geographical studies have shown that the water levels in Lake Tanganyika and Lake Malawi have remained fairly constant. The comparably stable environments in the latter two lakes might have kept the populations of cichlid fishes large enough to remove slightly deleterious mutations. The difference in the stability of cichlid fish population sizes between Lake Victoria and the Lakes Tanganyika and Malawi is expected to have caused differences in the nonsynonymous/synonymous ratio, ω (= d_N/d_S), of the evolutionary rate. Here, we estimated ω and compared it between the cichlids of the three lakes for 13 mitochondrial protein-coding genes using maximum likelihood methods. We found that the lineages of the cichlids in Lake Victoria had a significantly higher ω for several mitochondrial loci. Moreover, positive selection was indicated for several codons in the mtDNA of the Lake Victoria cichlid lineage. Our results indicate that both adaptive and slightly deleterious molecular evolution has taken place in the Lake Victoria cichlids' mtDNA genes, whose nonsynonymous sites are generally conserved.     

Feeding habits of the clupeid Limnothrissa miodon (Boulenger), in Lake Kivu

A limnological sampling programme implemented during 1980 in Lake Kivu, Rwanda, confirmed a seasonal increase of the pelagic plankton biomass at the end of the dry season during the windy period of August/September. From plankton samples taken in the littoral and pelagic zones of the Lake it was concluded that a successful introduction of the freshwater clupeid Limnothrissa miodon Boulenger, during 1958–1960, had not obviously influenced the species composition of the Copepoda in the Lake. Examination of stomach contents of different length classes of Limnothrissa proved that the Kivu clupeid is not a strict planktonphagic species. Its diet is adapted to its life cycle and inshore/offshore migration patterns. In pelagic waters of the lake it is an exclusive plankton feeder, while in littoral waters it has more littoral bound feeding habits. Cannibalism was observed among individuals larger than 100 mm, near the margins of the lake. Echosoundings and periodic observations on stomach contents support the hypothesis that Limnothrissa feeds in the late afternoon and digests its food during the night, while a second feeding/digestion cycle starts in the early morning, at sunrise.     

Genetic structure and gene flow in an endangered native tilapia fish (Oreochromis esculentus) compared to invasive Nile tilapia (Oreochromis niloticus) in Yala swamp, East Africa

The introduction of invasive Nile tilapia (Oreochromis niloticus), and the rapacious predator Nile perch (Lates niloticus), into Lake Victoria resulted in a decline in population sizes, genetic diversity and even extirpation of native species which were previously the mainstay of local fisheries. However, remnant populations of native fish species, including tilapia, still persist in satellite lakes around Lake Victoria where they may coexist with O. niloticus. In this study we assessed population genetic structure, diversity, and integrity of the native critically endangered Singidia tilapia (O. esculentus) in its refugial populations in the Yala swamp, Kenya, and contrasted this diversity with populations of the invasive tilapia O. niloticus in satellite lakes (Kanyaboli, Namboyo and Sare) and Lake Victoria. Based on mtDNA control region sequences and eight nuclear microsatellite loci, we did not detect any mtDNA introgression between the native and the invasive species in Lakes Kanyaboli and Namboyo, but did find low levels of nuclear admixture, primarily from O. niloticus to O. esculentus. Some genetic signal of O. esculentus in O. niloticus was found in Lake Sare, where O. esculentus is not found, suggesting it has recently been extirpated by the O. niloticus invasion. In both species, populations in the satellite lakes are significantly genetically isolated from each other, with private mtDNA haplotypes and microsatellite alleles. For O. niloticus, genetic diversity in satellite lakes was similar to that found in Lake Victoria. Our data imply a low frequency of immigration exchange between the two populations of O. esculentus and we suggest that the populations of this endangered species and important fisheries resource should be conserved separately in Lakes Kanyaboli and Namboyo and with high priority.     

Population differentiation in the Pacific white-sided dolphin Lagenorhynchus obliquidens inferred from mitochondrial DNA and microsatellite analyses

We investigated genetic diversity and differentiation of the Pacific white-sided dolphin (Lagenorhynchus obliquidens) in Japanese coastal waters and offshore North Pacific by analyzing mitochondrial DNA and nuclear microsatellite variation. A total of 519 bp of the mitochondrial control region was sequenced and five microsatellite locus were genotyped for 59 individuals. A high level of haplotypic diversity (h=96.1%), moderate level of nucleotide diversity (pi=1.65%) and average expected heterozygosity (HE=0.66-0.76) were within an extent of those reported for other odontocetes. Consistent genetic difference between the samples from Japanese coastal Pacific-Sea of Japan and offshore North Pacific was indicated by analyses of molecular variance (AMOVAs) based on mtDNA and microsatellite variations, comparison of genetic variabilities, and geographical distributions of mtDNA haplotypes and microsatellite alleles. This result suggests that Pacific white-sided dolphins in each of the above two areas belong to different populations between which gene flow has been severely restricted. The low genetic diversity and mtDNA genealogy of the population in Japanese coastal waters suggest that it originated from a small population that colonized the Sea of Japan or that experienced population reduction when this Sea was isolated from the North Pacific during a glacial period in the Late Pleistocene.     

Description of a commercially important pelagic species of the genus Diplotaxodon (Pisces: Cichlidae) from Lake Malawi, Africa

A new species of pelagic haplochromine cichlid of the genus Diplotaxodon is described from Lake Malawi, Africa. The species, which attains a size of 14cm s. L., feeds mainly on zooplankton, shows no sexual dimorphism in size or body proportions, breeds throughout the year and lives at depths of 20 to at least 120 m. Approximately 600 tonnes of the species were caught by trawlers in 1990–1991, in the south–eastern arm of the lake alone. It appears that this species is a major component of the pelagic community, and occupies an ecological role similar to that of the clupeid Limnothrissa miodon in Lake Tanganyika.     

Genetic diversity of common carp from two largest Chinese lakes and the Yangtze River revealed by microsatellite markers

Six polymorphic microsatellites (eight loci) were used to study the genetic diversity and population structure of common carp from Dongting Lake (DTC), Poyang Lake (PYC), and the Yangtze River (YZC) in China. The gene diversity was high among populations with values close to 1. The number of alleles per locus ranged from 2 to 11, and the average number of alleles among 3 populations ranged from 6.5 to 7.9. The mean observed (H _O) and expected (H _E) heterozygosity ranged from 0.4888 to 0.5162 and from 0.7679 to 0.7708, respectively. Significant deviations from Hardy–Weinberg Equilibrium expectation were found at majority of the loci and in all three populations in which heterozygote deficits were apparent. The analysis of molecular variance (AMOVA) indicated that the percent of variance among populations and within populations were 3.03 and 96.97, respectively. The Fst values between populations indicated that there were significant genetic differentiations for the common carp populations from the Yangtze River and two largest Chinese freshwater lakes. The factors that may result in genetic divergence and significant reduction of the observed heterozygosity were discussed.     

Conservation of the Lake Kasumigaura population of Nymphoides indica (L.) Kuntze based on genetic evaluation using microsatellite markers

We compared the genetic diversity of the Lake Kasumigaura population of Nymphoides indica with that of pond populations in Hyogo and Kagawa Prefectures, which are thought to maintain high genetic diversity, to elucidate the current genetic diversity and occurrence of distinctive alleles in the Lake Kasumigaura population. The genetic diversity, as measured by the mean number of alleles per polymorphic locus, effective number of alleles per locus, mean observed heterozygosity, mean expected heterozygosities, total gene diversity, and number of multilocus genotypes was lower in the Lake Kasumigaura population than in the Hyogo and Kagawa populations. In addition, the inbreeding coefficient suggests that random mating does not occur in the Lake Kasumigaura population. The degree of genetic differentiation between the Lake Kasumigaura population and the Hyogo and Kagawa populations suggests that the Lake Kasumigaura population is largely genetically distinct. We found five genotypes in the Lake Kasumigaura population that were absent from the Hyogo and Kagawa populations. These results demonstrate that the Lake Kasumigaura population is an important component of the overall genetic diversity of N. indica in Japan.     

Case study of microsatellite polymorphism of European perch in selected commercially important lakes of Latvia

Polymorphism of selected microsatellite markers was described for European perch populations of inland Lake Kala and costal Lake Babites in Latvia. The data consisted of ten microsatellite loci analysed for 90 individuals from the Lake Babites (n?=?45) and the Lake Kala (n?=?45). Both lakes differ in water area, connection with the Gulf of Riga (Baltic Sea), lake type, and fish species. In the Lake Kala population, the average number of alleles per locus varied from 4 to 15 and in the population of Lake Babites from 4 to 12. Low but significant genetic differentiation was detected between populations (F_ST?=?0.046). Observed and expected heterozygosity in both lakes was similar (Kala: H_o?=?0.680 and H_e?=?0.816; Babites: H_o?=?0.693 and H_e?=?0.815). The number of unique alleles per locus was 2.3 in Lake Kala and 0.6 in Lake Babites. The present study showed relatively high polymorphism of analysed microsatellite markers.     

长江水系草鱼遗传多样性的微卫星DNA分析

利用已发表的鲤微卫星引物在草鱼中进行PCR扩增,结果有5对引物(6个座位)能成功扩增并且有较高多态性,等位基因数在3-7个之间。这些异种扩增的草鱼微卫星符合孟德尔遗传规律。测序证明草鱼中的微卫星核心重复序列部分与鲤中的原始核心序列相似,也有一些变化。随后用这6个多态微卫星座位研究了来自长江水系的四个草鱼群体的遗传结构,结果显示每个群体的平均等位基因数在38与48之间,平均观测杂合度(Ho)在04000与05741之间,平均期望杂合度(HE)在04773与06489之间,有多个座位在不同的群体中偏离哈代-温伯格平衡。遗传距离分析表明四川群体与洞庭湖群体遗传距离最远,而嘉鱼群体与鄱阳湖群体遗传距离较近。分子变异分析(AMOVA)表明,群体内遗传变异与群体间遗传变异分别占总遗传变异的9560%与440%,固定系数(FST)为0044,这表明长江水系草鱼目前的群体分化很微弱。       

Population changes within a group of fish species in Lake Tanganyika following their exploitation

Pelagic fish populations in Lake Tanganyika consist mainly of two small clupeid species and four centroponiid species which prey on them. Exploitation with purse-seines began in the southeast arm in 1962 and catches were sampled up to early 1969. Inshore clupeid populations were also sampled with a scoop-net (lusenga of the kind used in the traditional inshore fishery.
Clupeid biomass reached annual maxima around September. One clupeid species, Stolothrissa tanganicae Regan, dominated pelagic catches except in 2 years when about equal quantities of the other clupeid, Limnothrissa miodon Blgr. were caught. Numbers of each predator (three species of Lates and Luciolates stappersii Blgr.) decreased from 1963 to 1966 and remained low thereafter. The clupeid catch rose from 1964 to 1967 and remained high in 1968. The average nightly catch weight per year of all species together altered relatively little. Changes in population size distributions occurred.
Sampling methods were concluded to be valid for clupeid populations, but probably indi-cated only general changes in predator populations. Clupeid life-cycles are mostly accomplished within a year, and appear closely related to the periodic and spatial variations in plankton production. The two species are competitive and can replace one another in the pelagic zone. Certain distribution patterns of the clupeids and of the predator young are believed to be adaptations to severe predation. Low replacement rates under fishing pressure account for the decline of predator species, and the clupeid increase resulted from reduction in predation. A fairly stable exploited phase has apparently been reached in which clupeid biomass is much greater and predator biomass much less than in the natural state. The data encourage certain predictions. Similar major trends occurred in the much larger fishery in the Burundi sector of the lake.     

The queer Tetraëdron minimum from Lake Kivu (Eastern Africa): is it a result of a human impact?

The coccal unicellular green algal genus Tetraëdron Kütz. ex Korshikov, which can be easily identified by its typical polygonal shape, is a common member of freshwater plankton and metaphyton, frequently observed in lowland temperate and tropical waters. During the analysis of samples from tropical Lake Kivu (Eastern Africa), we found an interesting “lemon-shaped” alga, which, after observations in light microscope and scanning electron microscope, had been listed as Tetraëdron sp. Isolation in pure culture allowed a deeper study on morphology at different stages of the life cycle and the partial sequencing of the 18S rDNA. The results from the different combined approaches confirmed that it belongs to the species Tetraëdron minimum (A. Braun) Hansg. The unusual “lemon-shaped” forms predominant in Lake Kivu are young stages of the life cycle. This study contributes to the knowledge of the morphological variability, reproduction, and resting stages of T. minimum and discusses the reasons for the dominance of such unusual shape found in Lake Kivu, a lake strongly impacted by human activities as resulted by the large-scale biomanipulation following the introduction of the “Tanganyika sardine,” Limnothrissa miodon (Boulenger, 1906), at the end of the 1950s.     

Genetic variation within and between populations of hermaphroditic <Emphasis Type="Italic">Bulinus truncatus</Emphasis> tetraploid freshwater snails of the Albertine Rift,East Africa

Genetic variability within and among Bulinus truncatus of the Albertine Rift freshwater bodies were assessed to investigate the degree of inbreeding and gene flow in the snail populations. The effect of ploidy on the genetic structuring of B. truncatus is also described. We characterized the genetic structure of seven B. truncatus populations from Lake Albert, Lake Kivu, and Katosho swamp in Tanzania using five polymorphic microsatellite loci. Genetic differentiation was quantified using pairwise FST values and Nei’s standard genetic distances. Different alleles were observed across all loci and genetic diversity was low although it varied greatly across populations; observed heterozygosity was, however, higher than the expected heterozygosity in three of the populations studied. Significant heterozygote deficiencies were observed coupled with significant linkage disequilibria in five populations for all the five loci examined in this study. We found significant genetic differentiation among the seven freshwater bodies; private alleles were observed across all loci indicating restricted or absence of gene flow between populations. Limited snail dispersal and the reproductive biology of B. truncatus are the major forces shaping the genetic variation observed. Low genetic variation within B. truncatus populations exposes them to a high parasite infection risk as predicted in the Red Queen hypothesis.     

Genetic population structure in the Lake Tanganyika sardine Limnothrissa miodon

There was significant morphological differentiation among samples of Tanganyika sardine Limnothrissa miodon , indicating non-random association of fish. Individuals within schools appeared to be unrelated as high mtDNA haplotype diversity demonstrated the presence of many maternal lineages in each school. Nevertheless, there was evidence from allozyme analysis for genetic differentiation on a very small geographical scale, possibly even among individual schools, without any clear geographical boundaries among populations. Similar microgeographical differentiation at the allozyme level was found in several marine pelagic species, suggesting a general pattern of random genetic structure in pelagic schooling fish. Such genetic patchiness may arise from biased reproductive success in localized spawning events and long-term stability of schools, resulting in genetic differentiation among schools. While the present results are preliminary, the far-reaching implications both for fisheries management and for evolutionary processes in pelagic species warrant further research on microgeographical genetic patterns using more sensitive markers.     

Genetic and morphoecological characteristics of peled <Emphasis Type="Italic">Coregonus peled</Emphasis> acclimatized in lakes of Tuva Republic

Morphoecological and genetic characters were studied of peled Coregonus peled naturalized in lakes of Tuva Republic. For comparison (as a donor), peled was considered from Leningrad oblast to originate from “wild” peled from Lake Endyr and dispersed widely into water bodies of the former Soviet Union. The results of analysis of variations in 18 polymorphic nuclear loci, coding the proteins (allozymes), and the part of mitochondrial (mt)DNA, coding the first subunit of NADH-dehydrogenase, attest genetic and morphoecological differentiation of populations formed in Tuva lakes. Significant differences were found between them in age composition, rate of growth, and external morphology. Statistically significant differences in allele frequencies of some loci were observed between the samples of acclimatized peled, though total level of genetic differentiation between the populations was not high (F _ST = 0.028). Estimates of gene diversity by allozyme loci were maximal in the population of alpine Lake Sut-Khol, but almost minimum diversity of mtDNA was observed in this population. It is obvious that “own” genetic appearance is formed in introduced fishes in every lake with peculiar diversity in the result of interaction between relatively homogeneous donor material and specific conditions of new environment, and this interaction is especially intense at the first stages of introduction.     

The puzzling phylogeography of the haplochromine cichlid fish Astatotilapia burtoni

Astatotilapia burtoni is a member of the “modern haplochromines,” the most species‐rich lineage within the family of cichlid fishes. Although the species has been in use as research model in various fields of research since almost seven decades, including developmental biology, neurobiology, genetics and genomics, and behavioral biology, little is known about its spatial distribution and phylogeography. Here, we examine the population structure and phylogeographic history of A. burtoni throughout its entire distribution range in the Lake Tanganyika basin. In addition, we include several A. burtoni laboratory strains to trace back their origin from wild populations. To this end, we reconstruct phylogenetic relationships based on sequences of the mitochondrial DNA (mtDNA) control region (d‐loop) as well as thousands of genomewide single nucleotide polymorphisms (SNPs) derived from restriction‐associated DNA sequencing. Our analyses reveal high population structure and deep divergence among several lineages, however, with discordant nuclear and mtDNA phylogenetic inferences. Whereas the SNP‐based phylogenetic hypothesis uncovers an unexpectedly deep split in A. burtoni, separating the populations in the southern part of the Lake Tanganyika basin from those in the northern part, analyses of the mtDNA control region suggest deep divergence between populations from the southwestern shoreline and populations from the northern and southeastern shorelines of Lake Tanganyika. This phylogeographic pattern and mitochondrial haplotype sharing between populations from the very North and the very South of Lake Tanganyika can only partly be explained by introgression linked to lake‐level fluctuations leading to past contact zones between otherwise isolated populations and large‐scale migration events.     

肖四海湖野生和人工放流鳜群体遗传结构分析

采用微卫星标记研究天然封闭型水体肖四海内鳜放流群体与野生群体的遗传差异,试图从分子水平探讨人工增殖放流群体与野生群体遗传结构的差异。结果表明:鳜两个群体在10对微卫星座位共发现有50个等位基因。其中,放流群体发现有22个等位基因,野生群体发现37个等位基因;通过He和PIC统计发现,野生群体遗传多样性明显高于放流增殖鳜,野生鳜群体表现出更丰富的遗传多样性;由杂合度检验可以看出,两个群体都呈现杂合过剩现象,经哈代-温伯格平衡检验,显示两个群体均显著偏离哈代-温伯格平衡(P0.001),属于连锁不平衡群体;群体间的FST检验,可以看出群体间的FST高于0.25,反映遗传变异主要存在于群体间,而不是群体内部,这充分反映近交及瓶颈效应会引起养殖群体遗传结构的改变,从而导致群体间的遗传分化。