Frankia strains of soil underBetula pendula: Behaviour in soil and in pure culture

A K/Rb isotope dilution method was used to determine the uptake of K from undisturbed subsoils. Rb was applied to the topsoil (0–30 cm) to trace the K taken up from the topsoil by crops. The K/Rb ratio in the crops increases when roots contact the Rb-free subsoil. This change in the K/Rb ratio enables the calculation of the uptake of K from the subsoil. Results of 34 field experiments on loess-parabrown soils in N. Germany showed that the subsoil (>30 cm) supplied, on average, 34% of the total K uptake by spring wheat (range 9–70%). The range between the experimental sites is considered in relation to the contents of K in the top and subsoils (as extracted by 0.025 N CaCl₂ solution), the proportion of the total root length in the subsoils, and competition for K between roots in the top and subsoil. In subsoils with similar K contents, uptake from the subsoil decreased significantly from 65 to 21% of total K uptake, as K contents in the topsoils increased from 4 to 8 mg K/100 g. On sites with the same K contents in topsoils (9 mg K/100 g), the subsoil supplied 12 to 61% of total K uptake as the K contents of the subsoil increased from 2 to 27 mg K/100 g. The contribution of uptake of K from the subsoil increased with the development of the crop, from 8% at first node stage to 35% at ear emergence, as the proportion of total root length in the subsoil increased. High root length densities in the topsoil (9 cm/cm³) resulted in competition for K between roots and increased uptake of K from the subsoil.     

Chelate behaviour in saline-alkaline soil conditions

Summary A spectrophotometric method was used to study the effect of pH and competing ions (Ca, Mg, Na) on the stability of Fe- and Cu-chelates of EDTA, DTPA and EDDHA. The measured stability was compared with the calculated stability-pH diagrams. A favourable agreement with the values of the formation constants was observed. Laboratory and pot experiments were carried out by adding these chelates to saline-alkaline soil and the extractable fractions of trace elements in soil and their uptake by barley were evaluated. Availability and uptake of Fe and Cu significantly increased, with different magnitude, by chelate application. The influence on Mn and Zn was variable. The most effective chelating agents, as deduced from uptake were: EDDHA for Fe, Cu and Mn; and EDTA for Zn.Radiobiological and Physical chemistry, Faculty of Agricultural Sciences, Ghent Belgium     

Microbial production and uptake of nitric oxide in soil

Abstract Fluxes of NO from three different soils have been studied by a flow-through system in the laboratory as a function of gas flow rate, of NO mixing ratio, and of incubation conditions. The dependence of net NO fluxes on gas flow rates and on NO mixing ratios could be described by a simple model of simultaneous NO production and NO uptake. By using this model, rates of gross NO production, rate constants of NO uptake, and NO compensation mixing ratios could be determined as function of the soil type and the incubation condition. Gross NO production rates were one to two orders of magnitude larger under anaerobic than under aerobic conditions. NO uptake rate constants, on the other hand, were only 5–8 times larger so that the compensation mixing ratios of NO were in a range of about 1600–2200 ppbv under anaerobic and of about 50–600 ppbv under aerobic conditions. The different soils exhibited similar NO uptake rate constants, but the gross NO production rate and compensation mixing ratio was significantly higher in an acidic (pH 4.7) sandy clay loam than in other less acidic soils. Experiments with autoclaved soil samples showed that both NO production and NO uptake was mainly due to microbial metabolism.     

Uptake of solutes by multiple root systems from soil

Summary The analog described in Part I is used to investigate quantitatively the the effects of pattern and density on the uptake and uptake rate of nutrients which move to plant roots by diffusion. The uptake by two roots is considered first, to illustrate the competitive effect. The results for multiple root systems are given for a variety of different soil and plant parameters at different times and demonstrate the importance of pattern and density in the uptake of different plant nutrients in both competitive and non competitive situations. Pattern can decrease the uptake by root systems by at least 75 per cent, depending on the value of the diffusion coefficient, time, and root density. Graphs of two indices of dispersion against uptake are given so that the effect of any pattern can be estimated. A procedure is outlined which enables the uptake after any time by a developing root system to be predicted and compared with a theoretical maximum. If the uptake is known, then the graphs show whether soil or plant parameters are limiting uptake.     

Uptake of nitrogen and phosphorus in relation to soil structure and nutrient mobility

Summary Nitrogen and phosphate uptake by young plants was studied in experiments, mainly using artificial aggregates of different sizes. Large impenetrable aggregates brought about coarse rooting, while in the finer substrates dense root growth was possible. Coarse rooting resulted diminished uptake of the mainly immobile stock of phosphate. Nitrate uptake, however, was hardly influenced by rooting density on account of its high mobility and transport along with the extracted water. On the finer substrates the plants absorbed more phosphate and therefore the N/P ratio was lower.Implications of this effect of soil structure on uptake are indicated.     

土壤化学性质对Cu的植物吸收效应和土壤有效Cu测定的影响

在华北平原石灰性土壤中,盆栽小麦的生物相关性检验证明,常用的SB/D联合浸提剂或AB/D联合浸提剂,与植物的吸Cu量均无显著相关关系,不适合直接用来测定土壤有效Cu.校正土壤pH和有机质含量之后,SB/D侵提剂与吸Cu总量的相关性则达到P＜0.01的极显著水平,可用于土壤有效Cu的评价.土壤pH越高则小麦吸收的Cu越少;土壤pH升高1个单位,则土壤有效Cu吸收量平均减少19μg·盆^-1.土壤pH升高和有机质含量增加,土壤有效Cu的测定结果分别减小和增大.     

On the track of natural transformation in soil

Abstract The understanding of microbial gene transfer including how bacteria acquire and disseminate genes in natural environments will provide data on the role of horizontal transfer in evolution. This understanding has been stimulated in recent years by concern about the impact of genetically engineered microorganisms on natural environments. This prospect has increased interest in determining the regulatory mechanisms of indigenous microbial populations as well as detecting genetic interactions between bacteria introduced into soil and the indigenous microflora. This paper will review the strategies developed to demonstrate whether the different steps required by natural bacterial transformation (the uptake of naked DNA by competent bacteria) could actually occur in soil. This will include a review on the release of DNA from microbial cells by passive or active mechanisms, its persistence by adsorption of extracellular DNA onto major soil components such as sand or clay minerals and the uptake of DNA by competent bacteria.     

Effects of intercropping on field-scale phosphorus acquisition processes in a calcareous soil

Plant and Soil - Calcium uptake by plants and the ratio of calcium to phosphorus (Ca/P) in the uptake have been recently identified as important drivers of P acquisition in neutral to alkaline...     

Changes in soil phosphorus fractions in a calcareous paddy soil under intensive rice cropping

We conducted a 4-year field experiment on a calcareous paddy soil in Zhejiang province of China to measure the changes in chemically extracted soil P fractions in an irrigated double-cropping rice system. Treatments included four fertilizer combinations (unfertilized control, NK, NP, and NPK) as main-plots and two rice cultivar types (inbred vs. hybrid rice) as sub-plots. Total plant P uptake and grain yield of rice declined in all treatments over time. Severe P-deficiency and significant rice yield losses began in treatments without P application after the second rice crop. Compared to inbred rice, hybrid rice increased grain yield (+18%), N uptake (+11%) and K uptake (+27%) but there was no significant difference in total plant P uptake. Recovery efficiencies of fertilizer-P averaged 31–32% in both cultivars. In treatments without P application, the P mass balance was negative (−6 to −8 kg P ha⁻¹ crop⁻¹) and phosphorus was drawn down in all inorganic P fractions, including resin, alkali- (NaHCO₃-Pi and NaOH-Pi) and acid-soluble P fractions (dilute HCl-P, concentrated HCl-P, residual-P). Only small amounts were removed from organic P fractions, 1–3 mg P kg⁻¹ year⁻¹ from NaHCO₃-Po and none from NaOH-Po. In treatments with fertilizer-P addition, the P mass balance was positive (+8 to 10 kg P ha⁻¹ crop⁻¹), soil P declined at a slower rate in inorganic P fractions and it increased (+51%) in the residual-P fraction. Hybrid rice generally caused greater depletion of inorganic soil P fractions than inbred rice, but there was no difference among cultivars in their effect on NaHCO₃-Po and NaOH-Po. Positive correlations (r = 0.63–0.81, P < 0.001) were observed between all inorganic P fractions (except residual-P) and total P uptake by rice. Our results suggest that rice plants draw P from a continuum of chemically extracted fractions that are assumed to have widely differing plant P availability. Regular P additions are required to maintain the effective soil P supply and differences between inbred and hybrid rice should be taken into account in P management strategies.     

Biologically available versus exchangeable magnesium in soil

Summary Equal weight of dry mycelium of the fungusAspergillus niger was found equivalent with equal magnesium uptake from synthetic nutrient (as standard series) and from solutions with soil as magnesium source. The quantities of magnesium remaining in the nutrient solutions after growth were also the same in cultures with or without addition of soil. It may be concluded that the method employed will give a correct picture of the ability of the fungus to release magnesium from the soil.During growth the fungus releases magnesium in excess of the maximum content of magnesium exchangeable with ammonium ions. This excess was found to be derived mainly from the clay fraction of the soil, although the silt fraction gives a considerable supplement. This is emphasized by the results from up to five repeated cultivations of the fungus in the same soil or its clay-/silt-fractions.Microbiologically available magnesium was determined after removal of the exchangeable fraction in 13 soils after three years of exhaustion by crop plants. The results showed a marked correlation (r=0.90) between the magnesium uptake by the fungus and the higher plant, and in addition the actual figures for magnesium uptake were on a comparable magnitude. Analysis of the soils after the third year of experiment showed that the fraction of magnesium available toAspergillus niger was not exhausted but only reduced to approximately one-half of the original content.     

铜污染旱地红壤的络合诱导植物修复作用

研究EDTA和低分子量有机酸对污染旱地红壤Cu形态变化及金属忍耐－富集型植物印度芥菜生长和Cu吸收的影响,以探讨Cu污染土壤的有机络合诱导植物吸取修复作用,结果表明,在芥菜营养生长旺盛期施用EDTA可显著提高土壤Cu的活性,土壤水浸提态Cu和交换态Cu均显著上升;这种活化效应随外加Cu浓度的上升和EDTA用量的增加而增大;柠檬酸和酸对土壤Cu的活化效应小,只对水浸提态Cu略有影响;EDTA可显著增加芥菜茎叶、根的Cu浓度和吸收量,等摩尔量柠檬酸和苹果酸对土壤铜形态变化和芥菜Cu吸收没有显著作用。     

Modeling long-term crop response to fertilizer and soil nitrogen

A simple nitrogen balance model to calculate long-term changes in soil organic nitrogen, nitrogen uptake by the crop and recovery of applied nitrogen, is presented. It functions with time intervals of one year or one growing season. In the model a labile and a stable pool of soil organic nitrogen are distinguished. Transfer coefficients for the various inputs of nitrogen are established that specify the fractions taken up by the crop, lost from the system, and incorporated in soil organic nitrogen. It is shown how input data, model parameters and initial pool sizes can be derived and how the model can be used for calculating long-term changes in total soil organic nitrogen and uptake by the crop. For nitrogen applied annually as fertilizer or organic material the time course of nitrogen uptake and recovery of applied nitrogen is calculated. To test the sensitivity of the model, calculations have been performed for different environmental conditions with higher or lower risks for losses. The model has also been applied to establish fertilizer recommendations for a certain target nitrogen uptake by the crop. Finally, for agricultural systems where periods of cropping alternate with peroids of green fallow the time course of nitrogen uptake by the crop is calculated.     

Microtensiometer technique for in situ measurement of soil matric potential and root water extraction from a sandy soil

The suitability of microtensiometers to measure the spatial variation of soil matric potential and its diurnal change was tested in a pot experiment with pearl millet (Pennisetum americanum [L.] Leeke) in a sandy soil as the soil dried out.The temporal and spatial resolution of this technique allowed precise measurement of soil matric potential and thus estimation of soil water extraction from different compartments as well as from the whole rooting zone. The technique also allowed the measurement of rehydration of plants at night and root water uptake rate per unit soil volume or per unit root length. The precision of determination of root water uptake depended greatly on the accuracy of the estimate of hydraulic conductivity, which was derived from a bare soil and might be different for a cropped soil owing to aggregation induced by the root system. A linear relationship between root length and water uptake was found (r²=0.82), irrespective of variation in soil water content between compartments and despite the variation in root age, xylem differentiation and suberin formation expected to exist between different compartments of the rooting zone. As the experiment was carried out in a range of soil matric potentials between –4 and –30 kPa, drought stress did not occur. Further information at lower soil matric potentials are required, to address questions such as the importance of soil resistance for water uptake, or which portion of the root system has to be stressed to induce hormonal signals to the shoot. The microtensiometer technique can be applied to soil matric potentials up to –80 kPa.     

The mobilisation and fate of soil and rock phosphate in the rhizosphere of ectomycorrhizal Pinus radiata seedlings in an Allophanic soil

A pot experiment was conducted to investigate the uptake of Zn from experimentally contaminated calcareous soil of low nutrient status by maize inoculated with the arbuscular mycorrhizal (AM) fungus Glomus caledonium. EDTA was applied to the soil to mobilize Zn and thus maximize plant Zn uptake. The highest plant dry matter (DM) yields were obtained with a moderate Zn addition level of 300 mg kg^?1. Plant growth was enhanced by mycorrhizal colonization when no Zn was added and under the highest Zn addition level of 600 mg kg^?1, while application of EDTA to the soil generally inhibited plant growth. EDTA application also increased plant Zn concentration, and Zn accumulation in the roots increased with increasing EDTA addition level. The effects of inoculation with G. caledonium on plant Zn uptake varied with Zn addition level. When no Zn was added, Zn translocation from roots to shoots was enhanced by mycorrhizal colonization. In contrast, when Zn was added to the soil, mycorrhizal colonization resulted in lower shoot Zn concentrations in mycorrhizal plants. The P nutrition of the maize was greatly affected by AM inoculation, with mycorrhizal plants showing higher P concentrations and P uptake. The results indicate that application of EDTA mobilized soil Zn, leading to increased Zn accumulation by the roots and subsequent plant toxicity and growth inhibition. Mycorrhizal colonization alleviated both Zn deficiency and Zn contamination, and also increased host plant growth by influencing mineral nutrition. However, neither EDTA application nor arbuscular mycorrhiza stimulated Zn translocation from roots to shoots or metal phytoextraction under the experimental conditions. The results are discussed in relation to the environmental risk associated with chelate-enhanced phytoextraction and the potential role of arbuscular mycorrhiza in soil remediation.     

Enrichment of high-affinity CO oxidizers in Maine forest soil

Carboxydotrophic activity in forest soils was enriched by incubation in a flowthrough system with elevated concentrations of headspace CO (40 to 400 ppm). CO uptake increased substantially over time, while the apparent K(m) ((app)K(m)) for uptake remained similar to that of unenriched soils (<10 to 20 ppm). Carboxydotrophic activity was transferred to and further enriched in sterile sand and forest soil. The (app)K(m)s for secondary and tertiary enrichments remained similar to values for unenriched soils. CO uptake by enriched soil and freshly collected forest soil was inhibited at headspace CO concentrations greater than about 1%. A novel isolate, COX1, obtained from the enrichments was inhibited similarly. However, in contrast to extant carboxydotrophs, COX1 consumed CO with an (app)K(m) of about 15 ppm, a value comparable to that of fresh soils. Phylogenetic analysis based on approximately 1,200 bp of its 16S rRNA gene sequence suggested that the isolate is an alpha-proteobacterium most closely related to the genera Pseudaminobacter, Aminobacter, and Chelatobacter (98.1 to 98.3% sequence identity).     

Changes in soil moisture drive soil methane uptake along a fire regeneration chronosequence in a eucalypt forest landscape

Disturbance associated with severe wildfires (WF) and WF simulating harvest operations can potentially alter soil methane (CH₄) oxidation in well‐aerated forest soils due to the effect on soil properties linked to diffusivity, methanotrophic activity or changes in methanotrophic bacterial community structure. However, changes in soil CH₄ flux related to such disturbances are still rarely studied even though WF frequency is predicted to increase as a consequence of global climate change. We measured in‐situ soil–atmosphere CH₄ exchange along a wet sclerophyll eucalypt forest regeneration chronosequence in Tasmania, Australia, where the time since the last severe fire or harvesting disturbance ranged from 9 to >200 years. On all sampling occasions, mean CH₄ uptake increased from most recently disturbed sites (9 year) to sites at stand ‘maturity’ (44 and 76 years). In stands >76 years since disturbance, we observed a decrease in soil CH₄ uptake. A similar age dependency of potential CH₄ oxidation for three soil layers (0.0–0.05, 0.05–0.10, 0.10–0.15 m) could be observed on incubated soils under controlled laboratory conditions. The differences in soil CH₄ uptake between forest stands of different age were predominantly driven by differences in soil moisture status, which affected the diffusion of atmospheric CH₄ into the soil. The observed soil moisture pattern was likely driven by changes in interception or evapotranspiration with forest age, which have been well described for similar eucalypt forest systems in south‐eastern Australia. Our results imply that there is a large amount of variability in CH₄ uptake at a landscape scale that can be attributed to stand age and soil moisture differences. An increase in severe WF frequency in response to climate change could potentially increase overall forest soil CH₄ sinks.     

Dynamics of plant metal uptake and metal changes in whole soil and soil particle fractions during repeated phytoextraction

Aims

Phytoextration of metal polluted soils using hyperaccumulators is a promising technology but requires long term successive cropping. This study investigated the dynamics of plant metal uptake and changes in soil metals over a long remediation time.

Methods

A soil slightly polluted with metals (S1) was mixed with highly polluted soil (S4) to give two intermediate pollution levels (S2, S3). The four resulting soils were repeatedly phyto-extracted using nine successive crops of Cd/Zn-hyperaccumulator Sedum plumbizincicola over a period of 4 years.

Results

Shoot Cd concentration decreased with harvest time in all soils but shoot Zn declined in S1 only. Similar shoot Zn concentrations were found in S2, S3 and S4 although these soils differed markedly in metal availability, and their available metals decreased during phytoextraction. A possible explanation is that plant active acquisition ability served to maintain plant metal uptake. Plant uptake resulted in the largest decrease in the acid-soluble metal fraction followed by reducible metals. Oxidisable and residual fractions were less available to plants. The coarse soil particle fractions made the major contribution to metal decline overall than the fine fractions.

Conclusion

Sedum plumbizincicola maintained long term metal uptake and the coarse soil particles played the most important role in phytoextraction.     

Direct uptake of soil nitrogen by mosses

Mosses are one of the most diverse and widespread groups of plants and often form the dominant vegetation in montane, boreal and arctic ecosystems. However, unlike higher plants, mosses lack developed root and vascular systems, which is thought to limit their access to soil nutrients. Here, we test the ability of two physiologically and taxonomically distinct moss species to take up soil- and wet deposition-derived nitrogen (N) in natural intact turfs using stable isotopic techniques (15N). Both species exhibited increased concentrations of shoot 15N when exposed to either soil- or wet deposition-derived 15N, demonstrating conclusively and for the first time, that mosses derive N from the soil. Given the broad physiological and taxonomic differences between these moss species, we suggest soil N uptake may be common among mosses, although further studies are required to test this prediction. Soil N uptake by moss species may allow them to compete for soil N in a wide range of ecosystems. Moreover, since many terrestrial ecosystems are N limited, soil N uptake by mosses may have implications for plant community structure and nutrient cycling. Finally, soil N uptake may place some moss species at greater risk from N pollution than previously appreciated.     

Increasing soil methane sink along a 120‐year afforestation chronosequence is driven by soil moisture

Upland soils are important sinks for atmospheric methane (CH₄), a process essentially driven by methanotrophic bacteria. Soil CH₄ uptake often depends on land use, with afforestation generally increasing the soil CH₄ sink. However, the mechanisms driving these changes are not well understood to date. We measured soil CH₄ and N₂O fluxes along an afforestation chronosequence with Norway spruce (Picea abies L.) established on an extensively grazed subalpine pasture. Our experimental design included forest stands with ages ranging from 25 to >120 years and included a factorial cattle urine addition treatment to test for the sensitivity of soil CH₄ uptake to N application. Mean CH₄ uptake significantly increased with stand age on all sampling dates. In contrast, CH₄ oxidation by sieved soils incubated in the laboratory did not show a similar age dependency. Soil CH₄ uptake was unrelated to soil N status (but cattle urine additions stimulated N₂O emission). Our data indicated that soil CH₄ uptake in older forest stands was driven by reduced soil water content, which resulted in a facilitated diffusion of atmospheric CH₄ into soils. The lower soil moisture likely resulted from increased interception and/or evapotranspiration in the older forest stands. This mechanism contrasts alternative explanations focusing on nitrogen dynamics or the composition of methanotrophic communities, although these factors also might be at play. Our findings further imply that the current dramatic increase in forested area increases CH₄ uptake in alpine regions.