The EUF-N contents of arable soils as an indicator of their yield potential

Summary Field experiments over two years were conducted on four fields with two respectively three soil types of different rooting depth to study the relationships between EUF-N fractions in the topsoil on the one hand and grain yield and N removal by different cereal crops on the other. The following results were obtained:A highly significant positive correlation was found to exist between N removal and EUF-N contents in the topsoil measured in the summer prior to the beginning of the experiment. In both experimental years a close correlation was observed between grain yields of cereals and EUF-N contents in the topsoil. The close relationship is due to EUF-N contents in the topsoil being closely correlated with the readily available water capacity of the rooted soil volume. These results indicate the adequacy of a EUF-N content as an index of the yield potential of a site which could be of practical significance in soil analysis.     

Isolation of a halobacterial phage with a fully cytosine-methylated genome

Summary A new bacteriophage from Halobacterium halobium has been isolated and partially characterized. It is not homologous to the phage H (Schnabel, et al. 1982) which infects the same bacterium, though it appeared spontaneously in a culture of H adapted to H. halobium NRL/JW. The size and morphology of N are comparable to that of other known halophages. The genome of N consists of linear double-stranded DNA, 56 kb in size, whose dCMP is totally replaced by 5-methyl-dCMP. This is the second case of a fully cytosine-methylated genome, the bacteriophage XP12 from Xanthomonas oryzae, being so far the only one reported. Like H, the N, genome seems to have terminal redundancy and circular permutation. N is the first halobacterial phage which survives prolonged exposure to low ionic strength environments. After 48 h incubation in distilled water a loss in infectivity of less than 50% is observed.     

Host factor requirements and some properties of ΦXtB

Summary Replication of XtB, a capsid mutant of bacteriophage X174, depends on the host functions directed by the E. coli genes dnaE, dnaF, dnaG, dnaZ, lig and rep. The cellular products of dnaA, dnaB, dnaC(D), dnaI, dnaP, polA, polB and xth genes are, however, dispensable for the viral growth. In these host factor requirements, XtB resembles phages K and St-1, rather than X174. Host ranges of XtB, St-1 and K overlap considerably, and growth temperature of the three phages is somewhat higher than that of X174. Furthermore, XtB is, like K, inactivated by antiserum against St-1. XtB may thus fill an evolutionary gap between the X174 group and the St-1 group.     

Ecology of Proteus flagellar phages

Summary Phages identical to X ₇ in host range and serological properties are liberated by several Proteus strains. Another Proteus flagellar phage, X ₈, differs from X ₇ antigenically and in host range.     

An improved method,using saturating light pulses,for the determination of photosystem I quantum yield via P700+-absorbance changes at 830 nm

An improved method is introduced for the determination of the quantum yield of photosystem I. The new method employs saturating light pulses with steep rise characteristics to distinguish, in a given physiological state, centers with an open acceptor side from centers with a reduced acceptor side. The latter do not contribute to PSI quantum yield (_I). Oxidation of P700 is measured by a rapid modulation technique using the absorbance change around 830 nm. The quantum yield _I is calculated from the amplitude of the rapid phase of absorbance change (A; 830 nm) upon application of a saturation pulse in a given state, divided by the maximal A (830 nm) which is induced by a saturation pulse with far-red background illumination. Using this technique, _I can be determined even under conditions of acceptor-side limitation, as for example in the course of a dark-light induction period or after elimination of CO₂ from the gas stream. Thus determined _I values display a close-to-linear relationship with those for the quantum yield of PSII (_II) calculated from chlorophyll fluorescence parameters. It is concluded that the proposed method may provide new information on the activity of the PSI acceptor side and thus help to separate the effects of acceptorside limitation from those of cyclic PSI, whenever a non-linear relationship between _II and the P700-reduction level is observed.Abbreviations and Symbols A absorbance change - _I quantum yield of photosystem I - _II quantum yield of photosystem II - PAR photosynthetically active radiation This work was supported by the Deutsche Forschungsgemeinschaft (SFB 176 Molekulare Grundlagen der Signalübertragung und des Stofftransportes in Membranen and SFB 251 Ökologie, Physiologie und Biochemie pflanzlicher Leistung unter Streß).     

The Instron technique as a measure of immediate-past wall extensibility

The relationship between the plastic-extensibility values (PEx) obtained in the Instron technique and the growth parameter, wall extensibility () has been evaluated for Avena sativa L. coleoptile cell walls. The possibility that PEx is proportional to the growth rate rather than to has been eliminated by showing that turgor-driven changes in the growth rate do not cause comparable changes in PEx. For Avena coleoptiles, PEx appears to be a measure of the average over the previous 60–90 min rather than a measure of the instantaneous of the growth equation. This is indicated by the fact that while PEx and the growth rate start to change simultaneously after addition of indole-3-acetic acid or KCN, the growth rate reaches a new, constant value 60–90 min before a new plateau value of PEx is obtained. Similar results are obrained with soybean (Glycine max L.) hypocotyl walls, indicating that the relationship between PEx and the parameter is a general one, although the period over which is averaged differs from tissue to tissue. In addition, it is shown that PEx can be measured more than once on the same section; a new potential for plastic extension is regenerated whenever the force vectors are changed even slightly. It is concluded that PEx is a measure of those domains in the wall where a wall-loosening event has occurred which has not been eliminated by further wall synthesis or other biochemical events.Abbreviations and symbols DP Instron plastic compliance - IAA indole-3-acetic acid - PEx Instron plastic extensibility - instantaneous wall extensibility     

Leaf anthocyanin content changes in Zea mays L. grown at low temperature: Significance for the relationship between the quantum yield of PS II and the apparent quantum yield of CO2 assimilation

The quantum yield of non-cyclic electron transport from PS II (PS II) and the apparent quantum yield of CO2 fixation (CO2) were measured in the maize genotype, R-CH HOPI, which shows a high leaf anthocyanin content when grown at a temperature slightly below 20 °C. Thus, the leaf anthocyanin content was thirty-five times higher in plants grown at 18 °C when compared to plants grown at 23 °C. The relationship between PS II and CO2 obtained at different CO2 partial pressure was linear for plants with both high and low leaf anthocyanin content. The PS II/CO2 ratio was about 16 in plants with high leaf anthocyanin content and about 10 in plants with low leaf anthocyanin content. The leaf light absorptance in the 400–700 nm region was higher in plants with higher leaf anthocyanin content. Since leaf absorptance between 400 and 600 nm and leaf anthocyanin content also resulted in a strict linear relationship, an indirect estimation of the absorbed light by leaf anthocyanins and thus at chloroplasts was derived. Using the correct estimation of the absorbed light at chloroplasts, to obtain CO2, differences in PS II/CO2 ratios between plants with different leaf anthocyanin content were eliminated. The modulation of leaf anthocyanin content by growth temperature is regarded as an effective strategy to modulate the light available at the chloroplasts.     

Mechanisms for controlling balance between light input and utilisation in the salt tolerant alga Dunaliella C9AA

The yield of photosynthetic O₂ evolution was measured in cultures of Dunaliella C9AA over a range of light intensities, and a range of low temperatures at constant light intensity. Changes in the rate of charge separation at Photosystem I (PS I) and Photosystem II (PS II) were estimated by the parameters _{PS I} and _{PS II} . _{PS I} is calculated on the basis of the proportion of centres in the correct redox state for charge separation to occur, as measured spectrophotometrically. _{PS II} is calculated using chlorophyll fluorescence to estimate the proportion of centres in the correct redox state, and also to estimate limitations in excitation delivery to reaction centres. With both increasing light intensity and decreasing temperature it was found that O₂ evolution decreased more than predicted by either _{PS I} or _{PS II}. The results are interpreted as evidence of non-assimilatory electron flow; either linear whole chain, or cyclic around each photosystem.Abbreviations F₀ dark level of chlorophyll fluorescence yield (PS II centres open) - F_m maximum level of chlorophyll fluorescence yield (PS II centres closed) - F_v variable fluorescence (F_m-F₀) - PS I Photosystem I - PS II Photosystem II - P₇₀₀ reaction centre chlorophyll(s) of PS I - q_N coefficient of non-photochemical quenching of chlorophyll fluorescence - q_P coefficient of photochemical quenching of fluorescence yield - q_E high-energy-state quenching coefficient - _{PS I} yield of PS I - _{PS II} yield of PS II - _S yield of photosynthetic O₂ evolution - _P intrinsic yield of open PS II centres     

Physiological relationship between the temperate phages lambda and phi80

Summary This work deals with the ability of phage 80 to provide defective mutants of with their missing functions. Functions Involved in Recombination. As shown by others, the Int mechanism of 80 cannot excise prophage . However, 80 efficiently excises recombinants from tandem dilysogens, using its Ter mechanism. Likewise, the nonspecific mechanism Red is interchangeable between 80 and . Maturation of DNA by 80. The Ter recombinants excised by 80 from tandem dilysogens are packaged into a 80 protein coat. This contrasts with the fact, already mentionned by Dove, that 80 is extremely inefficient for packaging phage superinfecting a -lysogen. The latter result is also found when the helper phage is a hybrid with the left arm of (80hy4 or 80hy41 — see Fig. 1). However, the maturation of the superinfecting is much more efficient if the 80hy used as a helper has the att-N region of (like 80hy1). Conversely a with the att-N region of 80 (hy6 — see Fig. 1) is packaged more efficiently by 80 or 80hy4 than by 80hy1. It is suggested that the maturation of chromosome superinfecting an immune cell requires a recombination with the helper phage. Vegetative Functions. Among the replicative functoons O and P, the latter only can be supplied by 80. That N mutants are efficiently helped by 80 does not tell that 80 provides the defective with an active N product; the chromosomes are simply packaged into a 80 coat. This shows that 80 is unable to switch on the late genes of . That neither 80 nor any of the 80hy tested can provide an active N product is shown in a more direct way by their complete failure to help N ^-r₁₄; this phage carries a polar mutation which makes the expression of genes O and P entirely N-dependant. The maturation of a N ^- by 80 contrasts with the fact that mutants affected in late genes (A, F or H) are not efficiently helped by 80. This suggests that the products coded by these genes are not interchangeable between 80 and , and that packaging of DNA into 80 coats is possible but inhibited when late proteins are present in the cell. Activation of the Late Genes. Among the im ₈₀ h ⁺ hybrids tested, only 80hy41 is able to switch on the late genes of a N defective mutant. This hybrid differs from the other hybrids studied here, by the fact that it has the Q-S-R region of (see Fig. 1). The results are consistant with the view that the product of Q gene is sufficient for activating the late genes of a DNA. N would thus control the expression of late genes only indirectly by controlling the expression of gene Q (Couturier & Dambly have independantly reached the same conclusion, 1970). Furthermore the failure of 80 and of the 80hy1 and 80hy4 to activate the late genes of would imply that these phages are unable to provide an Q product active on the chromosome Reciprocally, switches on the late genes of prophage 80hy41, but not of prophages 80hy1 and 80hy4. This suggests that the initiation of late genes expression takes place at a main specific site located in the Q-S-R region of the chromosome. The expression of the late genes would thus be sequential, and proceed through the left arm only when steaky ends cohere. Similar conclusions were reached independantly by Toussaint (1969) and by Herskowitz and Signer (1970).

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Ce travail a été réalisé dans le cadre du contrat d'association Euratom-U. L. B. 007-61-10 ABIB et avec l'aide du Fonds de la Recherche Fondamentale Collective.     

Identification of Photosynthetic Mutants of Arabidopsis by Automatic Screening for Altered Effective Quantum Yield of Photosystem 2

Quantification of chlorophyll (Chl) fluorescence is a versatile tool for analysing the photosynthetic performance of plants in a non-intrusive manner. A pulse-amplitude modulated fluorometer was combined with a CNC router for the automated measurement of the effective quantum yield of photosystem 2 (₂) of Arabidopsis thaliana plants. About 90 000 individual plants representing 7 500 lines derived from En-transposon and T-DNA mutagenised Arabidopsis populations were screened for mutants with altered ₂. Forty-eight recessive ₂ mutations were identified of which most exhibit also altered pigmentation and increased photosensitivity. For three ₂ mutants the corresponding mutated genes were identified that code all for chloroplast-located proteins. Comparison of the ₂ mutant screen with other screening methods based on the measurement of Chl fluorescence shows that the ₂ mutants identified are different to mutants identified by high Chl fluorescence. Some ₂ mutants, on the contrary, are common to mutants identified by screens based on non-photochemical quenching.     

Deuterium isotope effects and fractionation factors of hydrogen-bonded A:T base pairs of DNA

Deuterium isotope effects and fractionation factors of N1...H3–N3 hydrogen bonded Watson–Crick A:T base pairs of two DNA dodecamers are presented here. Specifically, two-bond deuterium isotope effects on the chemical shifts of ¹³C2 and ¹³C4, ²¹³C2 and ²¹³C4, and equilibrium deuterium/protium fractionation factors of H3, , were measured and seen to correlate with the chemical shift of the corresponding imino proton, _H3. Downfield-shifted imino protons associated with larger values of ²¹³C2 and ²¹³C4 and smaller values, which together suggested that the effective H3–N3 vibrational potentials were more anharmonic in the stronger hydrogen bonds of these DNA molecules. We anticipate that ²¹³C2, ²¹³C4 and values can be useful gauges of hydrogen bond strength of A:T base pairs.     

Light dependence of quantum yields of Photosystem II and CO2 fixation in C3 and C4 plants

The light dependence of quantum yields of Photosystem II (_II) and of CO₂ fixation were determined in C₃ and C₄ plants under atmospheric conditions where photorespiration was minimal. Calculations were made of the apparent quantum yield for CO₂ fixation by dividing the measured rate of photosynthesis by the absorbed light [A/I=_CO2 and of the true quantum yield by dividing the estimated true rate of photosynthesis by absorbed light [(A+R_l)/I_a=_CO2·], where R_L is the rate of respiration in the light. The dependence of the _II/_CO2 and _II/_CO2 ^* ratios on light intensity was then evaluated. In both C₃ and C₄ plants there was little change in the ratio of _II/_CO2 at light intensities equivalent to 10–100% of full sunlight, whereas there was a dramatic increase in the ratio at lower light intensities. Changes in the ratio of _II/_CO2 can occur because respiratory losses are not accounted for, due to changes in the partitioning of energy between photosystems or changes in the relationship between PS II activity and CO₂ fixation. The apparent decrease in efficiency of utilization of energy derived from PS II for CO₂ fixation under low light intensity may be due to respiratory loss of CO₂. Using dark respiration as an estimate of R_L, the calculated _II/_CO2 ^* ratio was nearly constant from full sunlight down to approx 5% of full sunlight, which suggests a strong linkage between the true rate of CO₂ fixation and PS II activity under varying light intensity. Measurements of photosynthesis rates and _II were made by illuminating upper versus lower leaf surfaces of representative C₃ and C₄ monocots and dicots. With the monocots, the rate of photosynthesis and the ratio of _II/_CO2 exhibited a very similar patterns with leaves illuminated from the adaxial versus the abaxial surface, which may be due to uniformity in anatomy and lack of differences in light acclimation between the two surfaces. With dicots, the abaxial surface had both lower rates of photosynthesis and lower _II values than the adaxial surface which may be due to differences in anatomy (spongy versus palisade mesophyll cells) and/or light acclimation between the two surfaces. However, in each species the response of _II/_CO2 to varying light intensity was similar between the two surfaces, indicating a comparable linkage between PS II activity and CO₂ fixation.Abbreviations A measured rate of CO₂ assimilation - A+R_L true rate of CO₂ assimilation; e - CO₂ estimate of electrons transported through PSII per CO₂ fixed by RuBP carboxylase - f fraction of light absorbed by Photosystem II - F'_m yield of PSII chlorophyll fluorescence due to a saturating flash of white light under steady-state photosynthesis - F_s variable yield of fluorescence under steady-state photosynthesis; PPFD-photosynthetic photon flux density - I_a absorbed PPFD - PS II Photosystem II - R_d rate of respiration in the dark - R_I rate of respiration in the light estimated from measurement of R_d or from analysis of quantum yields - apparent quantum yield of CO₂ assimilation under a given condition (A/absorbed PPFD) - true quantum yield of CO₂ assimilation under a given condition [(A+R_L)/(absorbed PPFD)] - quantum yield for photosynthetic O₂ evolution - electrons transported via PS II per quantum absorbed by PS II Supported by USDA Competitive Grant 90-37280-5706.     

On the relationship between chlorophyll fluorescence quenching and the quantum yield of electron transport in isolated thylakoids

The relationship between the empirical fluorescence index F/Fm and the quantum yield of linear electron flow, ^s, was investigated in isolated spinach thylakoids. Conditions were optimised for reliable determination of F/Fm and ^s with methyl viologen or ferricyanide as electron acceptors under coupled and uncoupled conditions. Ascorbate in combination with methyl viologen was found to stimulate light-induced O₂-uptake which is not reflected in F/Fm and interpreted to reflect superoxide reduction by ascorbate. In the absence of ascorbate, the plot of F/Fm vs. ^s was mostly linear, except for the range of high quantum yields, i.e. at rather low photon flux densities. With ferricyanide as acceptor, use of relatively low concentrations (0.1–0.3 mM) was essential for correct Fm-determinations, particularly under uncoupled conditions. Under coupled and uncoupled conditions the same basic relationship between F/Fm and ^s was observed, irrespective of ^s being decreased by increasing light intensity or by DCMU-addition. The plots obtained with methyl viologen and ferricyanide as acceptors were almost identical and similar to corresponding plots reported previously by other researchers for intact leaves. It is concluded that the index F/Fm can be used with isolated chloroplasts for characterisation of such types of electron flow which are difficult to assess otherwise, as e.g. O₂ dependent flux. The origin of the non-linear part of the relationship is discussed. An involvement of inactive PS II centers with separate units and inefficient Q_A-Q_B electron transfer is considered likely.Abbreviations AsA - ascorbate - DCMU - 3-(3,4-dichlorophenyl)-1,1-dimethylurea - MDA - monodehydroascorbate - MV - methyl viologen - PAR - photosynthetically active radiation - SOD - superoxide dismutase This paper is dedicated to David Walker who after 40 years in the field of photosynthesis is now retiring from his duties at Sheffield University.     

Energy migration in purple bacteria. The criterion for discrimination between migration- and trapping-limited photosynthetic units

A criterion has been evolved for distinguishing between migration- and trapping-limited photosynthetic units (PSUs). Its application to purple bacteria has proved their PSUs to be of trapping-limited type. It means that any improvements of the molecular structure of their PSUs cannot noticeably increase the overall rate constant of excitation delivery from antenna BChls to reaction centers (RCs).Abbreviations PSUs photosynthetic units - RCs reaction centers - Chl chlorophyll - BChl bacteriochlorophyll - R intermolecular distance, _e - quantum yields of the primary excitation trapping and wasteful losses respectively - _fl excitation and fluorescence lifetimes respectively     

Two useful dimensionless parameters that combine physiological, operational and bioreactor design parameters for improved control of dissolved oxygen

Two new dimensionless parameters ( and ) are proposed for calculating the proportional, integral, and derivative constants of a dissolved oxygen proportional integral-derivative (PID) feed-back control algorithm from knowledge of the growth rate, bioreactor design and operation variables. The values of and were determined for a broad range of Reynolds numbers (between 1000 to 40 000) during the exponential growth phase of two highly different processes: fermentations of recombinant Escherichia coli and cultures of human hematopoietic cells. The utility of and for use in dissolved oxygen self-tunning adaptive control algorithms is discussed.     

Quantifying Protein Folding Transition States with ΦT

A number of reaction coordinates have been proposed for reduced-dimensionalityrepresentations of a protein's folding free energy surface. We discuss in detail the entropic reaction coordinate _T = SS, recently introduced to quantify the conservation of mutations and the location of the folding transition state based on experimental temperature-tuning data. Numerical simulations illustrate the advantages as well as the limitations of _T. _T can be determined from experiment,computation, and analytical theory; _T can also be used to investigate structurally localized perturbations of the free energy surface. However, _T is only a relative reaction cordinate; furthermore, proteins undergo cold denaturation at sufficiently low temperatures, and care must be taken ininterpreting _T near the region where G/T = 0, particularly if the heat capacity change upon folding is small.     

Is There a Field-Theoretic Explanation For Precursor Biopolymers?

A Hu-Barkana-Gruzinov cold dark matter scalarfield may enter a weak isospin invariant derivative interactionthat causes the flow of right-handed electrons to align parallelto (). Hence, in the outer regions of galaxies where () islarge, as in galactic halos, the derivative interaction mayinduce a chirality-imbued quantum chemistry. Such a chirality-imbued chemistry would in turn be conducive to the formation ofabundant precursor biopolymers on interstellar dust grains,comets and meteors in galactic halo regions, with subsequentdelivery to planets in the inner galactic regions where and() are concomitantly near zero and left-right symmetricterrestrial quantum chemistry prevails.