Effect of Afforestation and Reforestation of Pastures on the Activity and Population Dynamics of Methanotrophic Bacteria

We investigated the effect of afforestation and reforestation of pastures on methane oxidation and the methanotrophic communities in soils from three different New Zealand sites. Methane oxidation was measured in soils from two pine (Pinus radiata) forests and one shrubland (mainly Kunzea ericoides var. ericoides) and three adjacent permanent pastures. The methane oxidation rate was consistently higher in the pine forest or shrubland soils than in the adjacent pasture soils. A combination of phospholipid fatty acid (PLFA) and stable isotope probing (SIP) analyses of these soils revealed that different methanotrophic communities were active in soils under the different vegetations. The C₁₈ PLFAs (signature of type II methanotrophs) predominated under pine and shrublands, and C₁₆ PLFAs (type I methanotrophs) predominated under pastures. Analysis of the methanotrophs by molecular methods revealed further differences in methanotrophic community structure under the different vegetation types. Cloning and sequencing and terminal-restriction fragment length polymorphism analysis of the particulate methane oxygenase gene (pmoA) from different samples confirmed the PLFA-SIP results that methanotrophic bacteria related to type II methanotrophs were dominant in pine forest and shrubland, and type I methanotrophs (related to Methylococcus capsulatus) were dominant in all pasture soils. We report that afforestation and reforestation of pastures caused changes in methane oxidation by altering the community structure of methanotrophic bacteria in these soils.     

Increasing soil methane sink along a 120‐year afforestation chronosequence is driven by soil moisture

Upland soils are important sinks for atmospheric methane (CH₄), a process essentially driven by methanotrophic bacteria. Soil CH₄ uptake often depends on land use, with afforestation generally increasing the soil CH₄ sink. However, the mechanisms driving these changes are not well understood to date. We measured soil CH₄ and N₂O fluxes along an afforestation chronosequence with Norway spruce (Picea abies L.) established on an extensively grazed subalpine pasture. Our experimental design included forest stands with ages ranging from 25 to >120 years and included a factorial cattle urine addition treatment to test for the sensitivity of soil CH₄ uptake to N application. Mean CH₄ uptake significantly increased with stand age on all sampling dates. In contrast, CH₄ oxidation by sieved soils incubated in the laboratory did not show a similar age dependency. Soil CH₄ uptake was unrelated to soil N status (but cattle urine additions stimulated N₂O emission). Our data indicated that soil CH₄ uptake in older forest stands was driven by reduced soil water content, which resulted in a facilitated diffusion of atmospheric CH₄ into soils. The lower soil moisture likely resulted from increased interception and/or evapotranspiration in the older forest stands. This mechanism contrasts alternative explanations focusing on nitrogen dynamics or the composition of methanotrophic communities, although these factors also might be at play. Our findings further imply that the current dramatic increase in forested area increases CH₄ uptake in alpine regions.     

Changes in soil moisture drive soil methane uptake along a fire regeneration chronosequence in a eucalypt forest landscape

Disturbance associated with severe wildfires (WF) and WF simulating harvest operations can potentially alter soil methane (CH₄) oxidation in well‐aerated forest soils due to the effect on soil properties linked to diffusivity, methanotrophic activity or changes in methanotrophic bacterial community structure. However, changes in soil CH₄ flux related to such disturbances are still rarely studied even though WF frequency is predicted to increase as a consequence of global climate change. We measured in‐situ soil–atmosphere CH₄ exchange along a wet sclerophyll eucalypt forest regeneration chronosequence in Tasmania, Australia, where the time since the last severe fire or harvesting disturbance ranged from 9 to >200 years. On all sampling occasions, mean CH₄ uptake increased from most recently disturbed sites (9 year) to sites at stand ‘maturity’ (44 and 76 years). In stands >76 years since disturbance, we observed a decrease in soil CH₄ uptake. A similar age dependency of potential CH₄ oxidation for three soil layers (0.0–0.05, 0.05–0.10, 0.10–0.15 m) could be observed on incubated soils under controlled laboratory conditions. The differences in soil CH₄ uptake between forest stands of different age were predominantly driven by differences in soil moisture status, which affected the diffusion of atmospheric CH₄ into the soil. The observed soil moisture pattern was likely driven by changes in interception or evapotranspiration with forest age, which have been well described for similar eucalypt forest systems in south‐eastern Australia. Our results imply that there is a large amount of variability in CH₄ uptake at a landscape scale that can be attributed to stand age and soil moisture differences. An increase in severe WF frequency in response to climate change could potentially increase overall forest soil CH₄ sinks.     

Molecular Analyses of Novel Methanotrophic Communities in Forest Soil That Oxidize Atmospheric Methane

Forest and other upland soils are important sinks for atmospheric CH₄, consuming 20 to 60 Tg of CH₄ per year. Consumption of atmospheric CH₄ by soil is a microbiological process. However, little is known about the methanotrophic bacterial community in forest soils. We measured vertical profiles of atmospheric CH₄ oxidation rates in a German forest soil and characterized the methanotrophic populations by PCR and denaturing gradient gel electrophoresis (DGGE) with primer sets targeting the pmoA gene, coding for the α subunit of the particulate methane monooxygenase, and the small-subunit rRNA gene (SSU rDNA) of all life. The forest soil was a sink for atmospheric CH₄ in situ and in vitro at all times. In winter, atmospheric CH₄ was oxidized in a well-defined subsurface soil layer (6 to 14 cm deep), whereas in summer, the complete soil core was active (0 cm to 26 cm deep). The content of total extractable DNA was about 10-fold higher in summer than in winter. It decreased with soil depth (0 to 28 cm deep) from about 40 to 1 μg DNA per g (dry weight) of soil. The PCR product concentration of SSU rDNA of all life was constant both in winter and in summer. However, the PCR product concentration of pmoA changed with depth and season. pmoA was detected only in soil layers with active CH₄ oxidation, i.e., 6 to 16 cm deep in winter and throughout the soil core in summer. The same methanotrophic populations were present in winter and summer. Layers with high CH₄ consumption rates also exhibited more bands of pmoA in DGGE, indicating that high CH₄ oxidation activity was positively correlated with the number of methanotrophic populations present. The pmoA sequences derived from excised DGGE bands were only distantly related to those of known methanotrophs, indicating the existence of unknown methanotrophs involved in atmospheric CH₄ consumption.     

Reforestation: A potential approach to mitigate excess atmospheric CH4 build‐up

Summary Methane (CH₄) is a very dangerous greenhouse gas, and its atmospheric concentration is rising due to natural and anthropogenic disturbances. Anthropogenic disturbances such as forest clearing, land‐use changes and farming practices all result in considerable increases in N inputs and alterations in soil properties, including the CH₄ sink potential of the soil. Forest soils contribute to the consumption of CH₄ due to the presence of methanotrophic bacteria. It is proposed that the restoration of degraded forest ecosystems or unused degraded land may significantly contribute to the recovery of methanotrophic activity in the soil and thereby the soil CH₄ sink potential.     

Effect of afforestation and reforestation of pastures on the activity and population dynamics of methanotrophic bacteria

We investigated the effect of afforestation and reforestation of pastures on methane oxidation and the methanotrophic communities in soils from three different New Zealand sites. Methane oxidation was measured in soils from two pine (Pinus radiata) forests and one shrubland (mainly Kunzea ericoides var. ericoides) and three adjacent permanent pastures. The methane oxidation rate was consistently higher in the pine forest or shrubland soils than in the adjacent pasture soils. A combination of phospholipid fatty acid (PLFA) and stable isotope probing (SIP) analyses of these soils revealed that different methanotrophic communities were active in soils under the different vegetations. The C18 PLFAs (signature of type II methanotrophs) predominated under pine and shrublands, and C16 PLFAs (type I methanotrophs) predominated under pastures. Analysis of the methanotrophs by molecular methods revealed further differences in methanotrophic community structure under the different vegetation types. Cloning and sequencing and terminal-restriction fragment length polymorphism analysis of the particulate methane oxygenase gene (pmoA) from different samples confirmed the PLFA-SIP results that methanotrophic bacteria related to type II methanotrophs were dominant in pine forest and shrubland, and type I methanotrophs (related to Methylococcus capsulatus) were dominant in all pasture soils. We report that afforestation and reforestation of pastures caused changes in methane oxidation by altering the community structure of methanotrophic bacteria in these soils.     

Diversity of methanotrophs in urea-fertilized tropical rice agroecosystem

Laboratory experiments were conducted to study the population size, diversity and methane oxidation potential of methanotrophs in tropical rice agroecosystem under the influence of N-fertilizer. Results indicate that the diversity of methane oxidizing bacteria (MOB) is altered in fertilizer treated soils compared to untreated control. Nevertheless, Type I MOB still dominated in the fertilized soils whereas the diversity of Type II methanotrophs decreases. Control soils have higher MOB population and CH₄ oxidation capacity than fertilized soils. Rhizospheric soil is more populated than non-rhizospheric soil in both unfertilized and fertilized conditions. Variation in K_m and V_max of methane oxidation in soils appears to be due to variation in methanotrophic community. Experimental results indicate that methanotrophic community differs both quantitatively and qualitatively in unfertilized and fertilized soils.     

内蒙古岗更诺尔湖泊退化情景下好氧甲烷氧化的微生物过程研究

【目的】内蒙古岗更诺尔湖退化为碱地、草地情景下,研究好氧甲烷氧化过程及其微生物群落的变化规律。【方法】针对湖泊沉积物及其退化后形成的碱地、草地土壤,在不同初始甲烷浓度下培养,研究其甲烷氧化速率,通过实时荧光定量PCR、高通量测序技术分析甲烷氧化菌的群落构成及其变化规律。【结果】湖泊退化过程中,沉积物和碱地的土壤理化性质、甲烷氧化速率变化规律基本一致,但与草地土壤有显著差异。在微生物属水平,甲烷氧化菌Methylococcus的丰度显著增加,在沉积物、碱地和草地中的丰度分别为19.2%、48.8%和78.3%,而Crenothrix的丰度明显降低,依次为54.7%、32.1%、和13.9%。进一步室内模拟不同初始浓度下甲烷氧化过程,发现沉积物中Crenothrix和Methylocaldum的增幅最大;碱地土壤中Methylococcus和Methylomonas的增幅远高于其他甲烷氧化菌;而在草地土壤中,Crenothrix增加高达7.81%,增幅达196倍。这些显著增加的微生物可能在不同浓度甲烷氧化过程中发挥了重要作用。【结论】湖泊退化过程中,甲烷氧化潜力降低。沉积物中的甲烷氧化菌发生了显著分异,Methylococcus逐渐成为碱地和草地的优势微生物,而Crenothrix则逐渐成为弱势类群。然而,草地土壤氧化高浓度甲烷过程中,数量上占弱势的Crenothrix迅速变为优势类群,可能发挥了重要作用。     

森林土壤甲烷吸收的主控因子及其对增氮的响应研究进展

森林土壤甲烷(CH4)吸收在生态系统碳、氮循环和碳平衡研究中具有重要作用。论述了森林土壤CH4的产生和消耗过程及其主控因子,有效氮不同的森林土壤CH4吸收对氮素输入的响应差异及其驱动机制,并且明确了现有研究的不足和未来研究的重点。研究表明:大气氮沉降输入倾向于抑制富氮森林土壤的CH4吸收,而对贫氮森林土壤CH4吸收具有显著的促进作用,其内在的氮素调控机制至今尚不明确。主要的原因是过去通过高剂量施氮试验所得出的理论难以准确地解释低水平氮沉降情景下森林土壤CH4吸收过程,有关森林土壤CH4吸收对大气氮沉降响应的微生物学机理也缺乏系统性研究。未来研究的重点是探讨森林土壤CH4物理扩散和净吸收过程对施氮类型、剂量的短期与长期响应,量化深层土壤CH4累积和消耗对表层土壤CH4吸收的贡献,揭示森林土壤CH4吸收对增氮响应的物理学与生物化学机制。另外,研究森林土壤甲烷氧化菌群落活性、结构对施氮类型和剂量的响应,阐明土壤CH4吸收与甲烷氧化菌群落组成的内在联系,有助于深入揭示森林土壤CH4吸收对增氮响应的微生物学机制。     

Microbial oxidation of methane,ammonium and carbon monoxide,and turnover of nitrous oxide and nitric oxide in soils

The effect of soil microbial processes on production and/or consumption of atmospheric trace gases was studied in four different soils which were preincubated in the presence of elevated concentrations of CH₄, NH ₄ ⁺ or CO, to simulate the growth of the resident populations of methanotrophic, nitrifying, or carboxydotrophic bacteria, respectively. Oxidation of CH₄, both at atmospheric (1.8 ppmv) and at elevated (3500 ppmv) CH₄ mixing ratios, was stimulated after preincubation with CH₄, but not with NH ₄ ⁺ or CO, indicating that CH₄ was oxidized by methanotrophic, but not by nitrifying or carboxydotrophic bacteria. However, the oxidation of CH₄ was partially inhibited by addition of NH ₄ ⁺ and CO. Analogously, oxidation of NH ₄ ⁺ was partially inhibited by addition of CH₄. Oxidation of CO at elevated mixing ratios (2300 ppmv) was stimulated after preincubation with CO, indicating oxidation by carboxydotrophs, but was also stimulated at a small extent after preincubation with CH₄, suggesting the involvement of methanotrophs. At atmospheric CO mixing ratios (0.13 ppmv), on the other hand, oxidation of CO was stimulated after preincubation with NH ₄ ⁺ , indicating that the activity was due to nitrifiers. NO uptake was stimulated in soils preincubated with CH₄, indicating the involvement of methanotrophs. However, production of N₂O was only stimulated, if CH₄ was added as a substrate. The results indicate that especially the methanotrophic and nitrifying populations in soil not only oxidize their specific substrates, but are also involved in the metabolism of other compounds.     

Soil environmental variables affecting the flux of methane from a range of forest, moorland and agricultural soils

Measurements of the net methane exchange over a range of forest, moorland, and agricultural soils in Scotland were made during the period April to June 1994 and 1995. Fluxes of CH₄ ranged from oxidation –12.3 to an emission of 6.8 ng m^–2 s^–1. The balance between CH₄ oxidation and emission depended on the physical conditions of the soil, primarily soil moisture. The largest oxidation rates were found in the mineral forest soils, and CH₄ emission was observed in several peat soils. The smallest oxidation rate was observed in an agricultural soil. The relationship between CH₄ flux and soil moisture observed in peats (Flux_{CH 4} = 0.023 × %H₂O (dry weight) – 7.44, p > 0.05) was such that CH₄ oxidation was observed at soil moistures less than 325%( ± 80%). CH₄ emission was found at soil moistures exceeding this value. A large range of CH₄ oxidation rates were observed over a small soil moisture range in the mineral soils. CH₄ oxidation in mineral soils was negatively correlated with soil bulk density (Flux_{CH 4} = –37.35 × bulk density (g cm^–3) + 48.83, p > 0.05). Increased nitrogen loading of the soil due to N fixation, atmospheric deposition of N, and fertilisation, were consistently associated with decreases in the soil sink for CH₄, typically in the range 50 to 80%, on a range of soil types and land uses.     

Methane oxidation rates in forest soils and their controlling variables: a review and a case study in Korea

Methane is one of the strongest of the greenhouse gases, being 30-fold more radiatively active than carbon dioxide on a molar basis. In addition, its atmospheric concentrations have increased by 1% per year since the Industrial Revolution. As such, the dynamics of methane is of great importance for the prediction of global climatic changes caused by increasing concentrations of greenhouse gases in the atmosphere. One of the most important biological sinks for methane is forest soils, where methanotrophic bacteria oxidize methane to carbon dioxide. Based on data mined from a review of the literature, we determined that the mean methane oxidation rate was 1.90 mg CH₄ m⁻² day⁻¹ and that the main variables controlling this rate were soil water content and inorganic nitrogen in the soils. In contrast, the effects of temperature and pH are minimal. In addition to reviewing the literature, we monitored methane oxidation rates in a temperate forest soil in Korea on a monthly basis for a year, using a static chamber method. The mean oxidation rate was 1.96 mg CH₄ m⁻² day⁻¹ and was positively correlated with nitrate concentration in the soil.     

Spatio-temporal variability and environmental controls of methane fluxes at the forest–tundra ecotone in the Fennoscandian mountains

We report on temporal and spatial variability in net methane (CH₄) fluxes measured during the thaw period of 1999 and 2000 at three study sites along a c. 8° latitudinal gradient in the Fennoscandian mountain range and across the mountain birch‐tundra ecotone. All of the sites studied here were underlain by well‐drained mesic soils. In addition, we conducted warming experiments in the field to simulate future climate change. Our results show significant CH₄ uptake at mesic sites spanning the forest‐tundra ecotone: on average 0.031 and 0.0065 mg CH₄ m^?2 h^?1 during the 1999 and 2000 thaw periods, respectively, in Abisko (Sweden), and 0.019 and 0.032 mg CH₄ m^?2 h^?1 during 2000 in Dovrefjell and Joatka (Norway), respectively. These values were both temporally and spatially highly variable, and multiple regression analysis of data from Abisko showed no consistent relationship with soil‐moisture status and temperature. Also, there was no consistent difference in CH₄ fluxes between forest and tundra plots; our data, therefore, provide no support for the hypothesis that conversion of tundra to mountain birch forest, or vice versa, would result in a systematic change in the magnitude or direction of net CH₄ fluxes in this region. Experimental warming treatments were associated with a 2.4 °C increase in soil temperatures (5 cm depth) in 1999 in Abisko, but no consistent soil warming was noted at any of the three field locations during 2000. In spite of this, there were significant treatment effects, principally early during the thaw period, with increased CH₄ uptake compared with control (ambient) plots. These results suggest that direct effects of air warming on vegetation processes (e.g. transpiration, root exudation and nutrient assimilation) can influence CH₄ fluxes even in predominantly methanotrophic environments. We conclude that net CH₄ oxidation is significant in these cold, mesic soils and could be strengthened in an environmental change scenario involving a combination of (i) an increase in the length of the thaw period and (ii) increased mean temperatures during this period in combination with decreased soil‐moisture content.     

Methanotrophic community structure and activity under warming and grazing of alpine meadow on the Tibetan Plateau

Knowledge about methanotrophs and their activities is important to understand the microbial mediation of the greenhouse gas CH₄ under climate change and human activities in terrestrial ecosystems. The effects of simulated warming and sheep grazing on methanotrophic abundance, community composition, and activity were studied in an alpine meadow soil on the Tibetan Plateau. There was high abundance of methanotrophs (1.2–3.4 × 10⁸ pmoA gene copies per gram of dry weight soil) assessed by real-time PCR, and warming significantly increased the abundance regardless of grazing. A total of 64 methanotrophic operational taxonomic units (OTUs) were obtained from 1,439 clone sequences, of these OTUs; 63 OTUs (98.4%) belonged to type I methanotrophs, and only one OTU was Methylocystis of type II methanotrophs. The methanotroph community composition and diversity were not apparently affected by the treatments. Warming and grazing significantly enhanced the potential CH₄ oxidation activity. There were significantly negative correlations between methanotrophic abundance and soil moisture and between methanotrophic abundance and NH₄–N content. The study suggests that type I methanotrophs, as the dominance, may play a key role in CH₄ oxidation, and the alpine meadow has great potential to consume more CH₄ under future warmer and grazing conditions on the Tibetan Plateau.     

Microbial and Environmental Controls of Methane Fluxes Along a Soil Moisture Gradient in a Pacific Coastal Temperate Rainforest

Most studies of greenhouse gas fluxes from forest soils in the coastal rainforest have considered carbon dioxide (CO₂), whereas methane (CH₄) has not received the same attention. Soil hydrology is a key driver of CH₄ dynamics in ecosystems, but the impact on the function and distribution of the underlying microbial communities involved in CH₄ cycling and the resultant net CH₄ exchange is not well understood at this scale. We studied the growing season variations of in situ CH₄ fluxes, microbial gene abundances of methanotrophs (CH₄ oxidizers) and methanogens (CH₄ producers), soil hydrology, and nutrient availability in three typical forest types across a soil moisture gradient. CH₄ displayed a spatial variability changing from a net uptake in the upland soils (3.9–46 µmol CH₄ m^?2 h^?1) to a net emission in the wetter soils (0–90 μmol CH₄ m^?2 h^?1). Seasonal variations of CH₄ fluxes were related to soil hydrology in both upland and wet soils. Thus, in the upland soils, uptake rates increased with the decreasing soil moisture, whereas CH₄ emission was inversely related to the water table depth in the wet soils. Spatial variability of CH₄ exchange was related to the abundance of genes involved in CH₄ oxidation and production, but there was no indication of a temporal link between microbial groups and CH₄ exchange. Our data show that the abundances of genes involved in CH₄ oxidation and production are strongly influenced by soil moisture and each other and grouped by the upland–wetland classification but not forest type.     

Changing land use reduces soil CH4 uptake by altering biomass and activity but not composition of high-affinity methanotrophs

Forest ecosystems assimilate more CO₂ from the atmosphere and store more carbon in woody biomass than most nonforest ecosystems, indicating strong potential for afforestation to serve as a carbon management tool. However, converting grasslands to forests could affect ecosystem–atmosphere exchanges of other greenhouse gases, such as nitrous oxide and methane (CH₄), effects that are rarely considered. Here, we show that afforestation on a well-aerated grassland in Siberia reduces soil CH₄ uptake by a factor of 3 after 35 years of tree growth. The decline in CH₄ oxidation was observed both in the field and in laboratory incubation studies under controlled environmental conditions, suggesting that not only physical but also biological factors are responsible for the observed effect. Using incubation experiments with ¹³CH₄ and tracking ¹³C incorporation into bacterial phospholipid fatty acid (PLFA), we found that, at low CH₄ concentrations, most of the ¹³C was incorporated into only two PLFAs, 18 : 1ω7 and 16 : 0. High CH₄ concentration increased total ¹³C incorporation and the number of PLFA peaks that became labeled, suggesting that the microbial assemblage oxidizing CH₄ shifts with ambient CH₄ concentration. Forests and grasslands exhibited similar labeling profiles for the high-affinity methanotrophs, suggesting that largely the same general groups of methanotrophs were active in both ecosystems. Both PLFA concentration and labeling patterns indicate a threefold decline in the biomass of active methanotrophs due to afforestation, but little change in the methanotroph community. Because the grassland consumed CH₄ at a rate five times higher than forest soils under laboratory conditions, we concluded that not only biomass but also cell-specific activity was higher in grassland than in afforested plots. While the decline in biomass of active methanotrophs can be explained by site preparation (plowing), inorganic N (especially NH₄⁺) could be responsible for the change in cell-specific activity. Overall, the negative effect of afforestation of upland grassland on soil CH₄ uptake can be largely explained by the reduction in biomass and to a lesser extent by reduced cell-specific activity of CH₄-oxidizing bacteria.     

Radioactive Fingerprinting of Microorganisms That Oxidize Atmospheric Methane in Different Soils

Microorganisms that oxidize atmospheric methane in soils were characterized by radioactive labelling with ¹⁴CH₄ followed by analysis of radiolabelled phospholipid ester-linked fatty acids (¹⁴C-PLFAs). The radioactive fingerprinting technique was used to compare active methanotrophs in soil samples from Greenland, Denmark, the United States, and Brazil. The ¹⁴C-PLFA fingerprints indicated that closely related methanotrophic bacteria were responsible for the oxidation of atmospheric methane in the soils. Significant amounts of labelled PLFAs produced by the unknown soil methanotrophs coeluted with a group of fatty acids that included i17:0, a17:0, and 17:1ω8c (up to 9.0% of the total ¹⁴C-PLFAs). These PLFAs are not known to be significant constituents of methanotrophic bacteria. The major PLFAs of the soil methanotrophs (73.5 to 89.0% of the total PLFAs) coeluted with 18:1 and 18:0 fatty acids (e.g., 18:1ω9, 18:1ω7, and 18:0). The ¹⁴C-PLFAs fingerprints of the soil methanotrophs that oxidized atmospheric methane did not change after long-term methane enrichment at 170 ppm CH₄. The ¹⁴C-PLFA fingerprints of the soil methanotrophs were different from the PLFA profiles of type I and type II methanotrophic bacteria described previously. Some similarity at the PLFA level was observed between the unknown soil methanotrophs and the PLFA phenotype of the type II methanotrophs. Methanotrophs in Arctic, temperate, and tropical regions assimilated between 20 and 54% of the atmospheric methane that was metabolized. The lowest relative assimilation (percent) was observed for methanotrophs in agricultural soil, whereas the highest assimilation was observed for methanotrophs in rain forest soil. The results suggest that methanotrophs with relatively high carbon conversion efficiencies and very similar PLFA compositions dominate atmospheric methane metabolism in different soils. The characteristics of the methane metabolism and the ¹⁴C-PLFA fingerprints excluded any significant role of autotrophic ammonia oxidizers in the metabolism of atmospheric methane.     

Land-Use Change and Biogeochemical Controls of Methane Fluxes in Soils of Eastern Amazonia

Tropical soils account for 10%–20% of the 15–35 Tg of atmospheric methane (CH₄) consumed annually by soils, although tropical deforestation could be changing the soil sink. The objectives of this study were (a) to quantify differences in soil CH₄ fluxes among primary forest, secondary forest, active pasture, and degraded pasture in eastern Amazonia; and (b) to investigate controlling mechanisms of CH₄ fluxes, including N availability, gas-phase transport, and soil respiration. At one ranch, Fazenda Vitória, annual uptake estimates (kg CH₄ha⁻¹ y⁻¹) based on monthly measurements were: primary forest, 2.1; secondary forest, 1.0; active pasture, 1.3; degraded pasture, 3.1. The lower annual uptake in the active pasture compared with the primary forest was due to CH₄ production during the wet season in the pasture soils, which is consistent with findings from other studies. In contrast, the degraded pasture was never a CH₄ source. Expressing uptake as a negative flux and emission as a positive flux, CH₄ fluxes were positively correlated with CO₂ fluxes, indicating that root and microbial respiration in the productive pastures, and to a lesser extent in the primary forest, contributed to the formation of anaerobic microsites where CH₄ was produced, whereas this productivity was absent in the degraded pasture. In all land uses, uptake rates of atmospheric CH₄ were greater in the dry season than in the wet season, indicating the importance of soil water content and gas transport on CH₄ fluxes. These clay soils had low annual uptake rates relative to reported rates on sandy soils, which also is consistent with gas transport within the soil being a limiting factor. Nitrogen availability indices did not correlate with CH₄ fluxes, indicating that inhibition of CH₄ oxidation was not an important mechanism explaining differences among land uses. At another ranch, Fazenda Agua Parada, no significant effect of pasture age was observed along a chronosequence of pasture ages. We conclude that land-use change can either increase or decrease the soil sink of CH₄, depending on the duration of wet and dry seasons, the effects of seasonal precipitation on gas-phase transport, and the phenology and relative productivity of the vegetation in each land use.     

Oxidation of methane in boreal forest soils: a comparison of seven measures

Methane oxidation rates were measured in boreal forest soils using seven techniques that provide a range of information on soil CH₄ oxidation. These include: (a) short-term static chamber experiments with a free-air (1.7 ppm CH₄) headspace, (b) estimating CH₄ oxidation rates from soil CH₄ distributions and (c)²²²Rn-calibrated flux measurements, (d) day-long static chamber experiments with free-air and amended (+20 to 2000 PPM CH₄) headspaces, (e) jar experiments on soil core sections using free-air and (f) amended (+500 ppm CH₄) headspaces, and (g) jar experiments on core sections involving tracer additions of¹⁴CH₄. Short-term unamended chamber measurements,²²²Rn-calibrated flux measurements, and soil CH₄ distributions show independently that the soils are capable of oxidizing atmospheric CH₄ at rates ranging to < 2 mg m^–2 d^–1. Jar experiments with free-air headspaces and soil CH₄ profiles show that CH₄ oxidation occurs to a soil depth of 60 cm and is maximum in the 10 to 20 cm zone. Jar experiments and chamber measurements with free-air headspaces show that CH₄ oxidation occurs at low (< 0.9 ppm) thresholds. The¹⁴CH₄-amended jar experiments show the distribution of end products of CH₄ oxidation; 60% is transformed to CO₂ and the remainder is incorporated in biomass. Chamber and jar experiments under amended atmospheres show that these soils have a high capacity for CH₄ oxidation and indicate potential CH₄ oxidation rates as high as 867 mg m^–2 d^–1. Methane oxidation in moist soils modulates CH₄ emission and can serve as a negative feedback on atmospheric CH₄ increases.     

Magnitude and biophysical regulators of methane emission and consumption in the Australian agricultural, forest, and submerged landscapes: a review

Increases in the concentrations of atmospheric greenhouse gases, carbon dioxide (CO₂), methane (CH₄), nitrous oxide (N₂O) due to human activities are associated with global climate change. CO₂ concentration in the atmosphere has increased by 33% (to 380 ppm) since 1750 ad, whilst CH₄ concentration has increased by 75% (to 1,750 ppb), and as the global warming potential (GWP) of CH₄ is 25 fold greater than CO₂ it represents about 20% of the global warming effect. The purpose of this review is to: (a) address recent findings regarding biophysical factors governing production and consumption of CH₄, (b) identify the current level of knowledge regarding the main sources and sinks of CH₄ in Australia, and (c) identify CH₄ mitigation options and their potential application in Australian ecosystems. Almost one-third of CH₄ emissions are from natural sources such as wetlands and lake sediments, which is poorly documented in Australia. For Australia, the major anthropogenic sources of CH₄ emissions include energy production from fossil fuels (~24%), enteric fermentation in the guts of ruminant animals (~59%), landfills, animal wastes and domestic sewage (~15%), and biomass burning (~5%), with minor contributions from manure management (1.7%), land use, land-use change and forestry (1.6%), and rice cultivation (0.2%). A significant sink exists for CH₄ (~6%) in aerobic soils, including agricultural and forestry soils, and potentially large areas of arid soils, however, due to limited information available in Australia, it is not accounted for in the Australian National Greenhouse Gas Inventory. CH₄ emission rates from submerged soils vary greatly, but mean values ≤10 mg m^?2 h^?1 are common. Landfill sites may emit CH₄ at one to three orders of magnitude greater than submerged soils. CH₄ consumption rates in non-flooded, aerobic agricultural, pastoral and forest soils also vary greatly, but mean values are restricted to ≤100 μg m^?2 h^?1, and generally greatest in forest soils and least in agricultural soils, and decrease from temperate to tropical regions. Mitigation options for soil CH₄ production primarily relate to enhancing soil oxygen diffusion through water management, land use change, minimised compaction and soil fertility management. Improved management of animal manure could include biogas capture for energy production or arable composting as opposed to open stockpiling or pond storage. Balanced fertiliser use may increase soil CH₄ uptake, reduce soil N₂O emissions whilst improving nutrient and water use efficiency, with a positive net greenhouse gas (CO₂-e) effect. Similarly, the conversion of agricultural land to pasture, and pastoral land to forestry should increase soil CH₄ sink. Conservation of native forests and afforestation of degraded agricultural land would effectively mitigate CH₄ emissions by maintaining and enhancing CH₄ consumption in these soils, but also by reducing N₂O emissions and increasing C sequestration. The overall impact of climate change on methanogenesis and methanotrophy is poorly understood in Australia, with a lack of data highlighting the need for long-term research and process understanding in this area. For policy addressing land-based greenhouse gas mitigation, all three major greenhouse gases (CO₂, CH₄ and N₂O) should be monitored simultaneously, combined with improved understanding at process-level.