Taxonomic treatments of Camellia (Theaceae) species with secretory structures based on integrated leaf characters

Multivariate analysis of leaf shape, anatomy, and Fourier-transform infrared (FTIR) data of 27 Camellia species with secretory structures (sects. Archecamellia, Stereocarpus, Furfuracea, Chrysantha), together with three species from related genera, Gordonia and Tutcheria (Theacea), was conducted to clarify some taxonomic problems. Our results show that crystals occurring in adaxial epidermal cells are firstly observed in Chrysantha species, and the secretory structures described are in fact cork warts. Furthermore, we introduce a form coefficient (F _c) to assess the shape of epidermal cells, since they are usually irregular and difficult to describe. Pearson correlation analysis indicates that F _c is useful to assess epidermal cell shape. Principal component analysis (PCA) of leaf shape indicates that two species from section Archecamellia and two species from section Stereocarpus are significantly different from those in section Furfuracea. Cluster analysis of FTIR data visualizes the degree of affinity among the 30 species examined here, which is consistent with the cluster analysis (CA) of anatomical data, as illustrated in the dendrogram. Therefore, our study indicates that integrated leaf characters based on leaf shape, anatomy, and FTIR data are useful in the taxonomic treatment of Camellia species with secretory structures. Taxonomic controversies among the Camellia species with secretory structures could thus be successfully addressed using only a few intact or small portions of leaves. Moreover, our results tend to support that Chrysantha species should not be merged into section Archecamellia, and that section Heterogenea should not be recognized in taxonomic treatments of Camellia species with secretory structures.     

Consistent and variable leaf anatomical characters in Carex (Cyperaceae)

The anatomy and morphology of leaves in Carex have the potential to be taxonomically useful. However, studies on the variability of leaf characteristics in the genus are sparse. Researchers therefore risk using leaf anatomical characters without the knowledge of whether they are consistent in a species. We examined 22 qualitative and seven quantitative leaf anatomy characters from transverse leaf sections to test their consistency across 11 Carex spp. The characters were clearly described and primarily microscopic. Some characters were found to exhibit high levels of intraspecific variation, whereas other characters exhibited high levels of consistency in a species, including the shape of the leaf section, the density of papillae and the size of epidermal cells. Caution must be applied when choosing leaf anatomy to delimit taxa because of the intraspecific variability found in some characters, but sufficient numbers of invariant characters exist to provide useful taxonomic separation. © 2013 The Linnean Society of London, Botanical Journal of the Linnean Society, 2013, 172 , 371–384.     

Leaf anatomy of Ficus subsection Urostigma (Moraceae)

Species of Ficus subsection Urostigma show much overlapping variation in vegetative morphology, which often precludes correct identification of the species. The aim of this study was to describe the leaf anatomical characters and their variation and to check their suitability for identification. Included were 41 samples belonging to 25 species of subsection Urostigma, four samples belonging to two species of section Leucogyne and one specimen of Ficus glaberrima subsp. siamensis of subsection Conosycea. Transverse sections of lamina, midrib and petiole and cuticular macerations were used, and the observed anatomical characters are described for each species. On the basis of a limited number of studied samples, leaf anatomy shows little variation within each species and each species has a unique combination of character states, facilitating identification. Ficus arnottiana shows some leaf anatomical characters that are quite different from those of other members of subsection Urostigma, including a multiple epidermis and enlarged lithocysts on both sides of the leaf. Both characters are generally considered as typical for Ficus subsection Conosycea. © 2014 The Linnean Society of London, Botanical Journal of the Linnean Society, 2014, 175 , 259–281.     

Comparative leaf anatomy, FTIR discrimination and biogeographical analysis of Camellia section Tuberculata (Theaceae) with a discussion of its taxonomic treatments

A comparative anatomical and FTIR study on the leaves of 18 disputed species of section Tuberculata (Camellia, Theaceae) combined with their biogeographical distribution have been conducted in order to investigate interspecific variations which are useful in species taxonomic treatment and systematic evolution. All Tuberculata species have bifacial and hypostomatic leaves, contain sclereids and crystals. Multivariate analysis of leaf FTIR data shows a visualization of the degree of affinity among the species in this section, which is consistent with the distribution of synonymous Tuberculata species indicated in the biogeographical maps. Our study indicates that the combination of characters based on leaf comparative anatomy, FTIR analysis and biogeographical distribution are useful in species revision. The results determine 11 species in section Tuberculata and provide the evolutionary trends in Tuberculata, which originated in three-river region of Guizhou province and spread to Guizhou, Guangxi, Yunnan, Sichuan, Chongqing, Hunan and probably Hubei provinces of China.     

A new species of Allium (Alliaceae) from Dalmatia,Croatia

Allium croaticum , a new species from the island of Vis in Central Dalmatia (Croatia) is described and illustrated. Its relationships with allied species belonging to the A. stamineum group (Allium section Codonoprasum) are discussed. It is a diploid species (2n = 16), colonizing calcareous screes and flowering in early summer. Its morphology, leaf anatomy, karyology, palynology, ecology and taxonomic position are examined. © 2008 The Linnean Society of London, Botanical Journal of the Linnean Society, 2008, 158 , 106–114.     

Taxonomic significance of leaf surface morphology in Aloe section Pictae (Xanthorrhoeaceae)

Leaf surface morphology was analysed in 32 species representing the maculate species complex (the poorly resolved section Pictae) in the genus Aloe (Xanthorrhoeaceae). Few comparative morphological data are available for the complex. Leaf surface and stomatal characters observed by scanning electron microscopy show taxonomically significant interspecific variation. Most species are characterized by irregularly outlined, four‐ to six‐sided epidermal cells, the periclinal walls of which are flat and embellished with micropapillae and the anticlinal walls of which are indicated by channels on the leaf surface. The outer stomatal pore is typically sunken or plane and surrounded by four lobes on the leaf surface that may overarch the epistomatal chamber. The guard cells have distinct outer and inner stomatal ledges. Two geographical groups, comprising southern and east African species, are distinguishable by their leaf surface morphology. These characters are diagnostic in A. ellenbeckii, A. prinslooi and A. suffulta and support changes in the delimitation of A. greatheadii, A. macrocarpa and A. swynnertonii. © 2009 The Linnean Society of London, Botanical Journal of the Linnean Society, 2009, 160 , 418–428.     

Camellia luteocerata sp. nov. and a new section of Camellia (Dalatia) from Vietnam

A new Vietnamese species of the genus Camellia L. (Theaceae, Theoidae) is described and illustrated as C. luteocerata Orel. This species occurs in the rainforests of Lam Dong Province, Vietnam. Morphological characteristics that distinguish it from related Camellia species are presented and discussed. Morphological evidence supports a taxonomic placement in a new section, which is described here as Camellia sect. Dalatia Orel, within C. subgen. Protocamellia (sensu Chang).     

Comparative vegetative anatomy and systematics of Laeliinae (Orchidaceae)

Laeliinae are one of the most prominent orchid subtribes, with c. 40 genera and nearly 1500 species, and contain a disparate group of taxa with widely varying morphological features. There does not appear to be a complex of characters to which one can refer in order to delineate the subtribe as a whole. Thus, it was thought that vegetative anatomy might provide clues to the monophyly of the group. The microscopic structure of the leaves, stems and roots of representatives of most of the genera was studied. It was concluded that the anatomy lacks overall uniformity and that vegetative characters alone are insufficient to assess the relationships amongst the genera. The only nearly consistent anatomical feature was the abaxial row of fibre bundles in the leaves. Thus, anatomically, as well as morphologically, Laeliinae are a mixed bag. © 2009 The Linnean Society of London, Botanical Journal of the Linnean Society, 2009, 160 , 21–41.     

Phylloclade anatomy in Phyllanthus section Choretropsis (Phyllanthaceae)

The phylloclade anatomy of nine Brazilian species of the genus Phyllanthus section Choretropsis was studied, and its systematic significance was analysed. The arrangement of epidermal cells varied according to the species, with the guard cells of the stomatal apparatus distributed randomly or with the longitudinal axis parallel to the branch. In both branch types, the stomata were distributed on the phylloclade surface, except in P. gladiatus which showed hypostomatic branches. In most of the species, phylloclades developed a vascular system surrounded by clusters of fibres and cortical parenchyma, which could differentiate into palisade‐like tissue and ground tissue like a true leaf blade. The distribution of the vascular system followed the cylindrical or flattened diameter shape of the branch. In subsection Choretropsis, the cylindrical branches of P. choretroides, contrary to other species, developed a second ring formed by clusters of fibres surrounded by large parenchymal cells. In subsection Applanata, the palisade‐like cells of P. flagelliformis phylloclades acquired an isodiametric shape. The highest level of specialization was observed in P. gladiatus, which developed phylloclades with a dorsiventral structure, a main vein, and small sets of lateral vascular bundles like a typical leaf blade. The tissue arrangement of different species showed a gradual pattern, which was correlated with the different branch morphology and plant architecture. Despite the transitional pattern, it was suggested that some of the phylloclades had an independent origin and convergent evolution in the Choretropsis section. The anatomy of different branch types was shown to be useful, either in isolation or in association with other morphological characters, to delimit the species and to further understand their relationships and phylogeny. © 2008 The Linnean Society of London, Botanical Journal of the Linnean Society, 2008, 157 , 91–102.     

Unravelling Diaporthe species associated with Camellia

The genus Diaporthe (syn. Phomopsis) comprises important pathogens, endophytes or saprobes with diverse host associations and worldwide distribution. Phomopsis theae is the first and hitherto the only recorded Diaporthe species on Camellia in China. The aim of this study was to investigate the Diaporthe species associated with symptomatic and asymptomatic tissues of Camellia spp. from several provinces in China. Eighty-three strains were isolated in the present study. Based on the multi-locus (ITS, HIS, TEF1, TUB) phylogenetic analyses and phenotypic characters, four novel species (D. apiculata Y.H. Gao & L. Cai, D. compacta Y.H. Gao & L. Cai, D. oraccinii Y.H. Gao & L. Cai, D. penetriteum Y.H. Gao & L. Cai), and three known species (D. discoidispora, D. hongkongensis, D. ueckerae) were identified. Five strains were assigned to D. amygdali species complex and 17 strains to D. eres species complex respectively, but they could not be further identified to species level using current multi-locus phylogenetic analysis and morphological characters. Of the identified species, D. compacta and D. discoidispora are only known as endophytes. Diaporthe hongkongensis is the dominant species on Camellia, accounting for 53.3% of the frequency of occurrence. Diaporthe lithocarpus is synonymized with D. hongkongensis; D. miriciae is synonymized with D. ueckerae. Our study revealed a high diversity of undescribed Diaporthe species on Camellia.     

Molecules,morphology, missing data and the phylogenetic position of a recently extinct madtom catfish (Actinopterygii: Ictaluridae)

Taxa missing large amounts of data pose challenges that may hinder the recovery of a well‐resolved, accurate phylogeny and leave questions surrounding their phylogenetic position. Systematists commonly have to contend with one or two species in a group for which there is little or no material available suitable for recovering molecular data. It is unclear whether these taxa can be better placed using analyses based on morphological data only, or should be included in broader analyses based on both morphological and molecular data. The extinct madtom catfish Noturus trautmani is known from few specimens for which molecular data are unavailable. We included this taxon in parsimony and Bayesian analyses of relationships of madtom catfishes based on a combination of morphological and molecular data. Results indicate that using a combination of morphological and molecular data does a better job at providing a phylogenetic placement for N. trautmani than morphology alone, even though it is missing all of its molecular characters. We provide a novel hypothesis of relationships among Noturus species and recommendations for classification within the group. © 2009 The Linnean Society of London, Zoological Journal of the Linnean Society, 2009, 155 , 60–75.     

Morphological and molecular description of new species of squat lobster (Crustacea: Decapoda: Galatheidae) from the Solomon and Fiji Islands (South‐West Pacific)

The family Galatheidae is among the most diverse families of anomuran decapod crustaceans, and the South‐West Pacific is a biodiversity hot spot for these squat lobsters. Attempts to clarify the taxonomic and evolutionary relationships of the Galatheidae on the basis of morphological and molecular data have revealed the existence of several cryptic species, differentiated only by subtle morphological characters. Despite these efforts, however, relationships among genera are poorly understood, and the family is in need of a detailed systematic review. In this study, we assess material collected in different surveys conducted in the Solomon Islands, as well as comparative material from the Fiji Islands, by examining both the morphology of the specimens and two mitochondrial markers (cytochrome oxidase subunit I, COI, and 16S rRNA). These two sources of data revealed the existence of eight new species of squat lobster, four of which were ascribed to the genus Munida, two to the genus Paramunida, one to the genus Plesionida, and the last species was ascribed to the genus Agononida. These eight species are described along with phylogenetic relationships at the genus level. Our findings support the taxonomic status of the new species, yet the phylogenetic relationships are not yet fully resolved. Further molecular analysis of a larger data set of species, and more conserved genes, will help clarify the systematics of this group. © 2009 The Linnean Society of London, Zoological Journal of the Linnean Society, 2009, 156 , 465–493.     

The Jambi gigantopterids and their place in gigantopterid classification

The gigantopterids are a pan‐palaeotropical Late Palaeozoic (to Early Mesozoic) plant group with unknown affiliations. Two gigantopterid species, both sole representatives of their respective genera, are known from the Early Permian Mengkarang Formation of Jambi (Sumatra, Indonesia). Through an emendation of the Jambi gigantopterids, based on the old and newly collected material, and a subsequent analysis of the leaf morphology of several gigantopterid genera, we conclude that the Jambi species are similar to the other gigantopterids, but do not appear to be related to them directly. We propose a possible scenario for the evolution of gigantopterid leaf morphology, based on marginal leaf growth, with implications for the validity of the gigantopterids as a natural group. © 2009 The Linnean Society of London, Botanical Journal of the Linnean Society, 2009, 161 , 302–328.     

Comparative Chloroplast Genomes of Camellia Species

Background

Camellia , comprising more than 200 species, is a valuable economic commodity due to its enormously popular commercial products: tea leaves, flowers, and high-quality edible oils. It is the largest and most important genus in the family Theaceae. However, phylogenetic resolution of the species has proven to be difficult. Consequently, the interspecies relationships of the genus Camellia are still hotly debated. Phylogenomics is an attractive avenue that can be used to reconstruct the tree of life, especially at low taxonomic levels.

Methodology/Principal Findings

Seven complete chloroplast (cp) genomes were sequenced from six species representing different subdivisions of the genus Camellia using Illumina sequencing technology. Four junctions between the single-copy segments and the inverted repeats were confirmed and genome assemblies were validated by PCR-based product sequencing using 123 pairs of primers covering preliminary cp genome assemblies. The length of the Camellia cp genome was found to be about 157kb, which contained 123 unique genes and 23 were duplicated in the IR regions. We determined that the complete Camellia cp genome was relatively well conserved, but contained enough genetic differences to provide useful phylogenetic information. Phylogenetic relationships were analyzed using seven complete cp genomes of six Camellia species. We also identified rapidly evolving regions of the cp genome that have the potential to be used for further species identification and phylogenetic resolution.

Conclusions/Significance

In this study, we wanted to determine if analyzing completely sequenced cp genomes could help settle these controversies of interspecies relationships in Camellia . The results demonstrate that cp genome data are beneficial in resolving species definition because they indicate that organelle-based “barcodes”, can be established for a species and then used to unmask interspecies phylogenetic relationships. It reveals that phylogenomics based on cp genomes is an effective approach for achieving phylogenetic resolution between Camellia species.     

石灰土和酸性土生境下金花茶组植物叶片钙形态差异

为探究不同生境下金花茶组植物的叶片钙形态特征，该研究以10种石灰土生境和4种酸性土生境的金花茶为对象，测定了其生境土壤的钙含量和pH值，以及该生境下金花茶组植物叶中的硝酸钙和氯化钙、水溶性有机酸钙、果胶酸钙、磷酸钙和碳酸钙、草酸钙、硅酸钙和总钙的含量。结果表明：(1)石灰土生境的土壤钙含量和土壤pH均极显著(P<0.01)高于酸性土。(2)在石灰土生境中，金花茶组植物的叶钙形态以草酸钙(41.17%)为主，而在酸性土生境中则以果胶酸钙(43.10%)为主，除硝酸钙和氯化钙、果胶酸钙外，石灰土金花茶的各叶钙形态和总钙含量均极显著(P<0.01)高于酸性土金花茶。(3)相关性分析结果显示，大部分叶钙形态含量与土壤pH和土壤钙含量呈极显著(P<0.01)正相关，表明土壤环境对金花茶组植物叶钙形态特征具有重要影响。(4)单因素方差分析结果显示，各叶钙形态含量在物种间存在极显著(P<0.01)差异，表明金花茶组植物在物种分化过程中叶钙形态特征具有多样性。(5)基于叶钙形态特征的聚类分析显示，14种金花茶可归为3大类。总体而言，不同生境背景下金花茶组植物的叶钙形态差异可能是...     

The infrageneric taxonomy of Chaerophyllum (Apiaceae) revisited: new evidence from nuclear ribosomal DNA ITS sequences and fruit anatomy

Evolutionary relationships among 65 Chaerophyllum spp. were inferred from nuclear ribosomal DNA internal transcribed spacer (ITS) sequence variation. Thirty‐one species, represented by 158 mericarp samples, were analysed for fruit anatomical character variation, employing phylogenetic and phenetic methods to explore their congruence with infrageneric divisions based on molecular data. Phylogenetic trees inferred from molecular data using maximum likelihood (ML) and Bayesian inference (BI) methods corroborated the division of the genus into four sections: Chaerophyllum, Dasypetalon, Physocaulis and Chrysocarpum. From among the newly sequenced species, the Greek endemic C. heldreichii was grouped with section Chaerophyllum, whereas the highly variable Asian C. reflexum–C. villosum complex formed an early‐branching paraphyletic assemblage in section Chrysocarpum. The recently described C. karsianum has an identical ITS sequence to C. bulbosum, whereas C. aksekiense was clearly separated from the morphologically similar C. macrospermum. Our study confirmed the postulated synonymy of several species on the basis of morphology, but also demonstrated distant relationships between some morphologically similar species. With the exception of the monotypic section Physocaulis, we were unable to find carpological traits matching sectional divisions. We hypothesize that fruit characters evolved rapidly as a result of diversification of members of the genus in different habitats. © 2015 The Linnean Society of London, Botanical Journal of the Linnean Society, 2015, 178 , 298–313.     

20种山茶科植物的叶表皮微形态研究

为解决一些山茶科(Theaceae)的分类学问题,该研究在光学显微镜下对山茶科2亚科6属共20种植物的13种叶表皮微形态特征进行了观察,并利用聚类分析和主成分分析对这些特征进行分析,为山茶科的科学分类提供参考资料。结果表明:(1)山茶科20种植物的13种叶表皮微形态特征能够区分种间差异和分类等级,显示了比较全面的分类价值。(2)基于微形态特征的聚类分析和主成分分析结果显示,20个种分为2个大类群以及10个分支,很好地区分了山茶亚科(Theoideae)与厚皮香亚科(Ternstroemoideae),并将大部分分类地位相近的物种归类到一起,较好地反映了物种之间的亲缘关系。(3)该研究结果支持将小黄花茶组(Sect.Luteoflora)作为独立的一个组;支持将重庆山茶(Camellia chungkingensis Chang)从瘤果茶组(Sect.Tuberculata Chang Tax.)中分离;支持将山茶亚科与厚皮香亚科划分为两个较大类群,认为将厚皮香亚科并入五列木科(Pentaphylacaceae)的观点还有待更多实验证据的支持。