光合磷酸化的研究——Ⅻ.细菌载色体的非循环光合磷酸化

研究兼性厌氧紫色非硫螺旋菌及严格厌氧紫色硫细菌的离体载色体的非循环光合磷酸化,结果指出: (1)在厌氧并用HOQNO抑制载色体循环光合磷酸化的情况下,以过量维生素丙及催化量DCPIP为电子供体时,维生素K_3,FMN,反丁烯二酸等化合物均可作为电子受体构成非循环光合磷酸化。(2)在有氧状态时,维生素丙及DCPIP为电子供体的非循环光合磷酸化能以分子氧为最终电子受体。外加任何电子受体,不再促进磷酸化活力。(3)紫色硫细菌的载色体尚能以H_2S为电子供体与维生素K_3构成非循环光合磷酸化。(4)在载色体中的氢化酶的催化下,分子氢可以通过DCPIP,在光下联接于维生素K_3或反丁烯二酸的还原。其所偶联的磷酸化,具有非循环类型的特性。基于上述结果,对非循环光合磷酸化在光合细菌中的生理意义作了简短的讨论。     

以N-甲基吡咯烷酮(NMP)为电子供体进行反硝化的可行性及实验研究

【目的】利用N-甲基吡咯烷酮(N-methylpyrrolidone, NMP)作为电子供体进行反硝化实验,以实现废水资源化。【方法】分别将NMP废水和葡萄糖作为电子供体加入到模拟的城市污水处理尾水中进行反硝化,比较2种电子供体去除硝酸盐的规律。同时考查NMP在反硝化过程中的氮素释放规律,并对所释放的氮素进行后续处理。最后再对它们作为电子供体时的反硝化污泥采用高通量测序,从微生物群落的角度分析NMP作为电子供体时其作用机理是否相同。【结果】当以NMP为电子供体时,硝酸盐氮的去除速率比葡萄糖为电子供体时要快67%。在8 h的反硝化结束后,剩余的硝酸盐氮、累积的亚硝酸盐氮和NMP本身所释放氨氮之和的总氮,与葡萄糖为电子供体时相近。【结论】NMP废水可以作为电子供体用于城镇污水处理厂的深度脱氮。对2种碳源所驯化的反硝化污泥样品进行高通量分析表明,NMP与葡萄糖作为电子供体用于反硝化反应时,相关的作用机理是不同的。该项研究结果对利用含氮杂环化合物作为电子供体进行反硝化具有重要的理论指导意义。     

光合细菌原初反应的理论研究

选择光合细菌的原初电子供体P₈₇₀为理论研究对象 ,通过理论计算发现 :( 1 )原初电子供体的双分子结构在能量上比单分子结构更有利 ;( 2 )电荷分离之后 ,原初电子供体的原有空间构型不再是稳定的构型 ,其构型会向能量和化学活性都更低的构型转变 .在光合细菌的P₈₇₀ 中 ,这种转变通过C₃ 位的乙酰基旋转使其氧原子与另 1个细菌叶绿素a分子的镁原子相互作用 ,导致P^+.₈₇₀的总能量和化学活性都明显降低 .认为原初电子供体的构型在原初反应过程中的这种转变对于防止原初反应过程中的电荷重组、维持光能的高效转化有重要意义 .提出了原初反应的新模型 ,并利用这一新机理对最近的动力学和定点突变研究结果给予了较合理的解释 .     

构建“小”的艺术——从分子开关到分子马达

生物体的复杂结构和功能为我们提供了启发和挑战,即如何在分子水平构建纳米结构,并控制它的功能。通过＂自下而上＂的路线,我们着重在以下方面进行了探索：组装对外界刺激具有响应性的纳米体系,其中关键是在分子和超分子水平控制它的动态过程。分子开关是受外界刺激控制的单元,并可作为分子存储和电子元件。本文介绍了一类受光控制的分子开关,由于光控的简单性和高效性,此类光分子开关有望在分子水平的信息存储领域展现重要的应用价值。此外,通过将另一类光分子开关螺吡喃与通道蛋白结合,成功实现了蛋白孔的光控开关,可以被称为＂分子阀门＂,对未来的可控药物释放提供了很好的模型。分子马达是对纳米科学的巨大挑战,并将是未来分子机器的核心组成部分。本文介绍了新型的光驱动分子马达,对外界能量的利用使马达能够进行循环的定向运动,并且对马达分子结构的设计,能够构建出速度更快的第二代光驱动分子马达。然后,通过化学方法能够将该马达固定在纳米颗粒以至宏观界面的表面上,马达仍然能够受光驱动而高效运行。最后,本文展示了分子马达的一些应用,例如,马达的运动能够引起与之结合的高分子体系、液晶,甚至宏观物体的变化。     

不同电子供体对2,4-二氯酚还原脱氯的影响

以葡萄糖、乙酸钠、Fe0、Fe0 葡萄糖、Fe0 乙酸钠作为电子供体,接种未驯化厌氧混合菌,考察2,4-二氯酚(2,4-DCP)的还原脱氯特性及Fe0作为电子供体的最佳作用条件与持续性特征.结果表明:与葡萄糖的作用相比,Fe0 葡萄糖可有效提高目标物脱氯效果;乙酸钠、Fe0及Fe0 乙酸钠均为有效电子供体,其中Fe0作为电子供体时目标物脱氯效果最佳,最佳作用条件为初始pH8.0,Fe0投加量2.0 g/L,4-CP为其主要脱氯中间产物;Fe0可持续供给2,4-DCP还原脱氯所需电子,而乙酸钠不断消耗后其脱氯效果与Fe0作为电子供体有明显差距.     

一种改进的荧光共振能量转移方法分析同质二聚体内蛋白质-蛋白质相互作用

荧光共振能量转移(fluorescence resonance energy transfer, FRET)技术日益广泛的应用于检测活细胞中分子内和分子间的相互作用. 由于FRET仅发生于相互作用的供体和受体,即供体-受体复合物之间,所以检测的FRET信号必须经标准化处理以去除供体受体比例和浓度的影响然后才能够进行FRET的比较研究. 由于供体和受体的比例相同,分子内FRET的检测较为简单;而分子间FRET的检测存在更多的不确定因素,导致现有的方法很难精确定量.根据1类特殊的分子间相互作用,同质二聚体的独特特征,推导出供体 受体复合物的含量,进而开发了1种同质二聚体分子间FRET的精确定量的方法,以1种同质二聚体,雌激素受体α(estrogen receptor alpha, ERα)为供体和受体对,通过和其它的方法比较,证实了该方法用于FRET检测可获得更可靠的结果.     

纳米生物学与纳米酶学：新兴交叉科学

纳米科学技术是20世纪80年代末期诞生并蓬勃发展的新兴科学技术,以多学科交叉融合为特色,为物理、化学、材料和生命科学等提供新的技术手段和研究视角.纳米材料的结构及表面物理化学性质直接决定了其与生物分子、细胞、组织、器官及个体的相互作用方式,并由此产生独特的生物效应——纳米生物效应.纳米生物学是从个体、细胞及分子水平深入研究纳米生物效应、阐明其精确机制的交叉科学,现已成为极具挑战性的热点前沿领域.中国科学家在纳米生物学领域已取得一系列令国际同行瞩目的重要进展,其中纳米酶(nanozyme)的开发及应用研究是极具代表性的原创发现之一.     

用铁蛋白合成纳米粒子的研究进展

铁蛋白是一种生物储铁蛋白 ,其储存铁的特性和储存铁在生物体内的特殊形态 ,通过相对温和、简便的生物、化学、物理过程 ,可合成多种具有特异的力、热、光、电、磁等特性的纳米粒子 ,并可用来构建纳米级的分子器件     

封面故事

<正>在分子层面的生物学和医学研究中,需要将生物分子相互作用转换为可以探测的物理信号,以研究其过程、数量和机制。光学生物传感,即应用光学探针传感生物学信号,是应用最为广泛的一类。随着纳米生物技术的应用,光学生物传感探针的结构更加     

冷冻电子断层成像技术及其在生物研究领域的应用

冷冻电子断层成像可以在纳米级尺度上研究那些结构不具有均一性的分子、病毒、细胞器以及它们之间组成的复合体的三维结构。在过去的十年中,电子显微镜硬件、冷冻制样设备和技术,以及自动化断层数据收集方法的进步使得本研究领域得到快速发展。本文对冷冻电子断层成像的方法,包括基本原理、样品制备、断层数据采集和图像处理、三维重构以及重建信息的理解和展示、近年来在生物样品领域的一些典型应用以及前景作一简单介绍。     

Preparation and characterization of catalase-positive particles ('microperoxisomes') from Harder's gland of the rat.

Catalase-positive particles (diameter 0.1–0.3 μm) from Harder's gland of the rat were prepared by differential centrifugation. It was demonstrated that these particles do not contain the oxidases thought to be characteristic of peroxisomal systems (i.e. urate oxidase, d-amino acid oxidase, and α-hydroxy acid oxidase). Cytochemical DAB reaction was employed to demonstrate the organelles in the gland tissue and in subcellular fractions by electron microscopy.     

Thermodynamic control of D-amino acid oxidase by benzoate binding

The redox properties of D-amino acid oxidase (D-amino-acid: O2 oxidoreductase (deaminating) EC1.4.3.3) have been measured at 18 degrees C in 20 mM sodium pyrophosphate, pH 8.5, and in 50 mM sodium phosphate, pH 7.0. Over the entire pH range, 2 eq are required per mol of FAD in D-amino acid oxidase for reduction to the anion dihydroquinone. The red anion semiquinone is thermodynamically stable as indicated by the separation of the electron potentials and the quantitative formation of the semiquinone species. The first electron potential is pH-independent at -0.098 +/- 0.004 V versus SHE while the second electron potential is pH-dependent exhibiting a 0.060 mV/pH unit slope. The redox behavior of D-amino acid oxidase is consistent with that observed for other oxidase enzymes. On the other hand, the behavior of the benzoate-bound enzyme under the same conditions is in marked contrast to the thermodynamics of free D-amino acid oxidase. Spectroelectrochemical experiments performed on inhibitor-bound (benzoate) D-amino acid oxidase show that benzoate binding regulates the redox properties of the enzyme, causing the energy levels of the benzoate-bound enzyme to be consistent with the two-electron transfer catalytic function of the enzyme. Our data are consistent with benzoate binding at the enzyme active site destroying the inductive effect of the positively charged arginine residue. Others have postulated that this positively charged group near the N(1)C(2) = O position of the flavin controls the enzyme properties. The data presented here are the clearest examples yet of enzyme regulation by substrate which may be a general characteristic of all flavoprotein oxidases.     

The mechanism of conversion of rat liver xanthine dehydrogenase from an NAD+-dependent form (type D) to an O2-dependent form (type O).

Rat liver xanthine dehydrogenase, type D, has been isolated directly from crude extracts as an antibody complex and its properties compared with those of two oxidase forms of the enzyme, heat-treated type O and trypsin-treated type O, also isolated as antibody complexes. The type D antibody complex displays electron acceptor specificities and electron paramagnetic resonance properties characteristic of an NAD⁺-dependent dehydrogenase whereas the trypsin-treated type O complex behaves as an O₂-utilizing oxidase. The heat-treated type O complex displays intermediate behavior. After electrophoresis in dodecyl sulfate-urea-acrylamide gels, type D and heated type O enzymes show single polypeptide bands, each of approximately 150,000 molecular weight. The trypsinized type O also shows one major band but with an approximate molecular weight of 130,000. Purified type D enzyme, when proteolytically treated, is converted to an oxidase with increased mobility on polyacrylamide gels. The 150,000 molecular weight subunit is cleaved into smaller subunits during proteolysis. Treatment with 5,5′-dithiobis-(2-nitrobenzoic acid) converts the type D enzyme, whether isolated as the purified enzyme or as the immune precipitate, to type O enzyme in a time-dependent manner. Titration of type D and the two type O antibody complexes with 5,5′-dithiobis-(2-nitrobenzoic acid) reveals that type D and heated type O each has approximately 28 reactive sulfhydryls, whereas the trypsinized type O has only 8 such groups. Many of the free sulfhydryls are vicinal and form disulfide bonds during the conversion to an oxidase by this reagent. Unproteolyzed preparations of type O rat liver enzyme and milk xanthine oxidase are converted to type D enzymes by treatment with dithiothreitol. The converted enzymes display electron acceptor specificities and epr properties characteristic of an NAD⁺-dependent dehydrogenase molecule.     

Studies on a possible molecular basis for the structure of mitochondrial cristae

We have investigated a possible molecular basis for mitochondrial cristae formation. Proteoliposomes containing electron transport proteins, cytochrome oxidase, or complex III in their proper orientation bind to pig heart mitoplasts but not pig heart mitochondria. Using Leydig tumor cells, we have confirmed earlier reports that chloramphenicol causes a diminution in cristae content and a change in its characteristic lamellar form. We show that the proteoliposomes containing cytochrome oxidase or complex III in the proper orientation bind to mitoplasts from Leydig tumor cells but do not bind as well to mitoplasts from chloramphenicol-treated Leydig tumor cells. These experiments provide a possible mechanism to explain cristae formation.     

Differential Mitochondrial Electron Transport through the Cyanide-Sensitive and Cyanide-Insensitive Pathways in Isonuclear Lines of Cytoplasmic Male Sterile, Male Fertile, and Restored Petunia

Three pairs of isonuclear lines of cytoplasmic male sterile (CMS) and fertile Petunia cells (Petunia hybrida [Hook] Vilm. and Petunia parodii L.S.M.) grown in suspension culture were examined for sensitivity to inhibitors of respiratory electron transport at time-points after transfer into fresh media. Cells from CMS lines differed from cells of fertile lines in their utilization of the cyanide-insensitive oxidase pathway. Under our culture regime, after approximately 3 days of culture cells from the CMS lines exhibited much lower cyanide-insensitive, salicylhydroxamic acid-sensitive respiration than cells from the fertile lines. This respiratory difference was shown to be specific to the mitochondrial alternative oxidase pathway by using other characteristic inhibitors of mitochondrial electron transport in experiments with isolated mitochondria. Immature anthers from CMS plants also showed lower alternative oxidase activity relative to anthers from male fertile plants, but no such difference was detected in leaf tissue, ovary or perianth tissue, or anthers collected just prior to anthesis. A cell line from a fertile plant carrying a nuclear fertility restorer gene and the CMS cytoplasm exhibited increased activity of the alternative pathway compared with the CMS lines.     

Electron transfer process in cytochrome oxidase after pulse radiolysis

The reduction of bovine heart cytochrome oxidase by the 1-methylnicotinamide (MNA) radical was investigated by the use of pulse radiolysis. With the decay of the MNA radical, the absorption at 445 and 605 nm, a characteristic to ferrous heme a of the oxidase, increased. The kinetic difference spectrum obtained was similar to that of the fully reduced minus the fully oxidized form of the oxidase, and was not different from that obtained in the reaction of the MNA radical with the mixed valence CO complex of the oxidase, where heme a3 is the CO-bound reduced form with heme a oxidized. This suggests that the absorption changes at 445 and 605 nm arise from the reduction of heme a, not heme a3. In order to elucidate the contribution of "visible" copper in this reaction, the absorption of the oxidase in the near-infrared region was measured. A decrease of the 830 nm band due to the reduction of visible copper was detected with a half-life of 5 microseconds. This absorption change obeyed pseudo-first order kinetics and its rate constant increased with the concentration of the oxidase. This suggests that the absorption change at 830 nm is followed by a bimolecular reaction of the MNA radical with visible copper of the oxidase. After the first phase of the reduction, the return of the 830 nm band corresponding to oxidation of the copper was observed with a half-life of 100 microseconds. Concomitantly, the absorption at 605 and 445 nm due to the reduction of heme a increased. The rates of oxidation of the copper were identical to those of the reduction of heme a and independent of the oxidase concentration. This suggests that the MNA radical reacts with visible copper of the oxidase with a second order rate constant of 1.5 X 10(9) m-1 s-1 and subsequently the electron flows to heme a by intramolecular electron migration with a first order rate constant of 1.8 X 10(4) s-1. An activation energy of the intramolecular electron transfer was calculated to be 2.8 kcal/mol in the range 4-33 degrees C.     

A correlative ultrastructural and enzymatic study of cotyledonary microbodies following germination of fat-storing seeds

Summary Sunflower, cucumber, and tomato cotyledons, which contain microbodies in both the early lipid-degrading and the later photosynthetic stages of post-germinative growth, were processed for electron microscopy according to conventional procedures and examined 1, 4 and 7 days after germination. Homogenates of sunflower cotyledons were assayed for enzymes characteristic of glyoxysomes and leaf peroxisomes (both of which are defined morphologically as microbodies) at stages corresponding to the fixations for electron microscopy. The particulate nature of these enzymes was demonstrated by differential and equilibrium density centrifugation, making it possible to relate them to the microbodies seen in situ.One day after germination, the microbodies are present as small organelles among large numbers of protein and lipid storage bodies; the cell homogenate contains catalase but no detectable isocitrate lyase (characteristic of glyoxysomes) or glycolic acid oxidase (characteristic of leaf peroxisomes). 4 days after germination, numerous microbodies (glyoxysomes) are in extensive and frequent contact with lipid bodies. The microbodies often have cytoplasmic invaginations. At this stage the cells are rapidly converting lipids to carbohydrates, and the homogenate has high isocitrate lyase activity. 7 days after germination, microbodies (peroxisomes) are appressed to chloroplasts and frequently squeezed between them in the green photosynthetic cells. The homogenate at this stage has substantial glycolic acid oxidase activity but a reduced level of isocitrate lyase. It is yet to be determined whether the peroxisomes present at day 7 are derived from preexisting glyoxysomes or arise as a separate population of organelles.     

2,6-Dichlorophenolindophenol is a competitive inhibitor for xanthine oxidase and is therefore not usable as an electron acceptor in the fluorometric assay.

Xanthine oxidase has been recognized as an important source of oxygen free radicals in ischemia-reperfusion injury. In order to study this enzyme in biological tissues, the conversion of pterin (2-amino-4-hydroxypteridine) to isoxanthopterin provides the basis for a very sensitive fluorometric assay. Xanthine oxidase is typically assayed in the presence of pterin only, while an electron acceptor which replaces NAD+ is used to determine the combined xanthine dehydrogenase plus xanthine oxidase activity. 2,6-Dichlorophenol-indophenol has been used as an electron acceptor in this assay. However, it was found in this study that it acts as an effective competitive inhibitor for xanthine oxidase. We concluded that methylene blue is the electron acceptor of choice in the fluorometric assays for xanthine oxidase.     

Photoreactivation of the cytochrome oxidase complex with cyanide: the reaction of heme a3 photoreduction.

Electron transfer activity of isolated cytochrome oxidase inhibited by low concentrations of cyanide by 93-95% was shown to rise no less than three times under exposure to visible light. Irradiation with visible light was found to increase the rate of reduction of cytochrome oxidase heme groups in the presence of sodium dithionite. Based on these results, it is suggested that the modification of the catalytic and spectral characteristic of the cytochrome oxidase-cyanide complex is due to the photostimulation of the intramolecular electron transport at the interheme (heme a heme a3) transfer stage, i.e., is caused by photoreduction of the enzyme's heme a3-CN complex.     

Light inhibition of respiration is due to a dual function of the cytochrome b6-f complex and the plastocyanin/cytochrome c-553 pool in Aphanocapsa

Studies of the respiratory electron transport pathway in the blue-green alga, Aphanocapsa, demonstrated the presence of cytochrome oxidase and a cytochrome complex. The use of antimycin A showed only the occurrence of a plastidal type of cytochrome complex (the cytochrome b6-f complex), which is insensitive to this inhibitor. Determination of the extent of photooxidation of cytochromes c-553 and f-556 under conditions of high and low cytochrome oxidase activities indicated an electron flow through both cytochromes to cytochrome oxidase. Direct evidence for a common segment of photosynthetic and respiratory electron transport from plastoquinone via the cytochrome b6-f complex to the soluble plastocyanin/cytochrome c-553 pool, as well as a competition between cytochrome oxidase and Photosystem I for reductants in this pool in the light, was obtained by measurements of electron transport with suitable electron donors in this alga.