小麦-簇毛麦6VS/6AL易位系可转化人工染色体(TAC)文库的构建

可转化人工染色体(Transformation\|competent Artificial Chromosome,TAC)是具有克隆和转移大片段基因能力的新型载体,是植物基因克隆和转化的有效工具。为了克隆小麦抗白粉病基因和其它基因,本研究用TAC载体pYLTAC17构建了带有抗白粉病基因Pm21的小麦簇毛麦6VS/6AL易位系的基因组DNA文库。该文库包含210万个克隆,平均插入片段35kb,库容相当于普通小麦基因组的49倍。本文库以约1000个克隆组成1个混合池的方式保存在22块96孔平板,可用PCR方法进行文库的筛选。     

α-乙酰乳酸脱羧酶的基因克隆及在大肠杆菌和酿酒酵母中的表达

以ｐＵＣ１９质粒为载体,以Ｅ．ｃｏｌｉ ＪＭ１０９为受体,构建了含α－乙酰乳酸脱羧酶（α－ＡＬＤＣ）基因的地衣芽孢杆菌Ｂａｃｉｌｌｕｓ ｌｉｃｈｅｎｉｆｏｒｍｉｓ ＡＳ１０１０６的基因文库,得到４８００个重组转化子中均含有４～１０ｋｂ的外源插入ＤＮＡ片段,从基因文库中筛选到６个阳性克隆,对其中１个克隆的α－乙酰乳酸脱羧酶基因片段进行亚克隆分析表明,该α－乙酰乳酸脱羧酶基因位于１．６ｋｂ的ＢａｍＨⅠ     

水稻抗稻瘟病基因Pi-2(t)物理图谱的构建

应用ＢＡＣ文库,采用基于分子标记的染色体着陆（ｍａｒｋｅｒ－ｂａｓｅｄ ｃｈｒｏｍｏｓｏｍｅ ｌａｎｄｉｎｇ）和染色体步查（ｃｈｒｏｍｏｓｏｍｅ ｗａｌｋｉｎｇ）等手段,建立了包含有裟抗稻瘟病基因Ｐｉ－２（ｔ）的物理图谱,该物理图谱由２２个ＢＡＣ克隆组成,遗传跨度８ｃＭ,而物理距离为９２５ｋｂ,该物理图谱的构建不仅为进一步分离和克隆该基因打下了基础,同时也可为分子标记辅助选择育种选择抗稻瘟病新材料     

粟PsbA基因5’未端非编码区的结构特征

本文对粟（Ｓｅｔｃｒｉａｉｔａｉｌｉｃａ，俗称：谷子）叶绿体基因ｐｓｂＡ上２２ｋｂ的ＥｃｉＲＩ片段进行了克隆。该基因５’－未端非编码区就位于这个片段上。序列分析显示这个编码区存在着与原核生物基因类似的启动子结构：其“－１０”区序列为ＴＡＴＡＣＴ，与原核生物的仅相差一个核苷酸；“－３５”区序列为ＴＴＧＡＣＡ，与原核生物的完全相同。另一方面，在“－１０”和“－３５”区之间还存在着一个类似真核生物核基因启动子结构的“ＴＡＴＡＴＡ”保守序列。这表明粟ｐｓｂＡ基因的启动子既具有原核基因的特征、又具有真核基因的特征。粟ｐｓｂＡ基因的ｍＲＮＡ前导序多列长８７ｂｐ，与高粱的完全一致。可以推测：禾本科Ｃ３和Ｃ４植物中，ｐｓｂＡ基因ｍＲＮＡ前导序列区的差异可能具有某种普遍性。计算机分析结果显示，６种植物的ｐｓｂＡ基因ｍＲＮＡ前导序列区内均能形成小的茎环结构，而且这段“ＣＴＡＴＴＴＴ”额外序列恰好位于茎环结构中，造成了６种植物间茎环大小的差异。可能，这个小的二级结构对ｐｓｂＡ基因的表达调控有一定的影响。     

干旱诱导性启动子驱动的海藻糖—6—磷酸合酶基因载体的构建及转？…

通过ＰＣＲ程序克隆拟南芥（Ａｒａｂｉｄｏｐｓｉｓ ｔｈａｌｉａｎａ（Ｌ．）Ｈｅｙｎｈ．）的干旱诱导性启动子Ｐｒｄ２９Ａ及来自酿酒酵母（Ｓａｃｃｈａｒｏｍｙｃｅｓ ｃｅｒｅｖｉｓｉａｅ Ｈａｎｓｅｎ）的海藻糖－６－磷酸合酶基因（ＴＰＳ）,并将它们组成可在植物中表达的载体ＲＴ。通过根癌土壤杆菌（Ａｇｒｏａｃｔｅｒｉｕｍ ｔｕｎｅｆａｃｉｅｎｓ（Ｓｍｉｔｈ ｅｔ Ｔｏｗｎｓｅｎｄ）Ｃｏｎｎ）ＬＢＡ４４０     

丙肝病毒融合抗原基因NS3-C定点整合入衣藻叶绿体基因组的研究

用ＰＣＲ 方法从丙型肝炎病毒（ＨＣＶ） ｃＤＮＡ 文库中克隆了两段ＤＮＡ 片段,即ＨＣＶ 基因组非结构ＮＳ３区抗原基因（约０．７ ｋｂ）和核心抗原Ｃ区抗原基因（约０．６ ｋｂ）的ｃＤＮＡ 片段。在两段ｃＤＮＡ 间加入连接肽Ｓｅｒ－ Ｐｒｏ－ Ｇｌｙ－ Ｓｅｒ 的密码子序列,构建成融合抗原基因ＮＳ３－ Ｃ。将该融合基因与衣藻叶绿体基因ａｔｐＡ 的启动子和ｒｂｃＬ 基因的３′末端连接,得到丙肝病毒融合抗原基因ＮＳ３－ Ｃ表达盒,再将该表达盒与选择标记基因ａａｄＡ 表达盒和衣藻叶绿体基因组同源片段连接,构建成衣藻叶绿体转化载体ｐＳＳ６。基因枪法转化衣藻叶绿体,经壮观霉素筛选获得转化再生的单藻落,对转基因衣藻的ＰＣＲ 和Ｓｏｕｔｈｅｒｎ 杂交分析表明,融合抗原基因ＮＳ３－ Ｃ已整合到衣藻叶绿体基因组中。     

粘虫核型多角体病毒凋亡抑制基因的定位,序列和启动子结构

以ＡｃＮＰＶ凋亡抑制基因ｐ３５为探针,与ＬｓＮＰＶＤＮＡ的限制性片段和ＬｓＮＰＶＤＮＡＥｃｏＲＶ片段杂交,发现ＥｃｏＲＶ５．５ｋｂ片段有强烈的杂交信号。将此片段亚克隆后,测定了１２４４ｂｐ序列,发现一个完整的ＯＲＦ,推导的３０２个氨基酸与ＡｃＮＰＶｐ３５蛋白有７０．４％的氨基酸同源性,证明所测ＯＲＦ为ＬｓＮＰＶ的ｐ３５基因。结构分析发现其５′端有早期基因启动子元件ＧＣ、ＡＣＧＴ和ＴＡＴＡｂｏｘ。有２２ｂｐ的顺向重复序列,包括由两个重叠的ＴＡＴＡｂｏｘ和上下游两个ＡＣＧＴｍｏｔｉｆ组成的两套启动子元件,这些结构特征与ＡｃＮＰＶ的凋亡抑制基因十分相似。     

水稻重复序列RRD3在转基因植物中的启动子功能

来源于水稻（Ｏｒｙｚａ ｓａｔｉｖａ Ｌ．）的一个８２０ｂｐ多拷贝重复序列ＲＲＤ３,含有植物启动子ＴＡＴＡ－ｂｏｘ、ＣＡＡＴ－ｂｏｘ等特征保守基元。用ＲＲＤ３取代Ｔｉ载体ｐＢ１１２１中的ＣａｍＶ ３５Ｓ启动子,通过植物转化鉴定ＲＲＤ３的启动子功能。组织化学分析表明,根癌土壤杆菌（Ａｇｒｏｂａｃｔｅｒｉｕｍ ｔｕｍｅｆａｃｉｅｎｓ（Ｓｍｉｔｈ ｅｔ Ｔｏｗｎｓｅｎｄ） Ｃｏｎｎ）ＬＢＡ４４０４转化后     

水稻cDNA c73片段在大肠杆菌中的表达及其产物的纯化

曾以水稻蜡质基因５’调控区内一段３１ｂｐ片段为探针,用酵母单杂交法从水稻ｃＤＮＡ文库中筛选出若干个其编码的蛋白可能与此３１ｂｐ片段结合的ｃＤＮＡ克隆,现将其中的ｐＣ７３克隆中的插入片段ｃ７３连接到含Ｈｉｓ６的表达载体ｐＥＴ２８－ｃ（＋）上,在大肠杆菌ＢＬ２１（ＤＥ３）中进行诱导表达,并用Ｎｉ－ＮＴＡ树脂纯化得到预期的融合表达产物。在合适的诱导表达条件下,融合表达产物主要以可溶形式存在于大肠杆菌细胞     

大肠杆菌\%otsA\%基因的克隆和表达

用ＰＣＲ方法扩增了１．５ｋｂ的ｏｔｓＡ基因片段,将该片段连接到多拷贝克隆载体后转化ｏｔｓＢＡ缺失和ｏｔｓＡ缺陷的大肠杆菌菌株,使转化株重新获得ｏｔｓＡ基因功能。生长曲线表明转化株在高渗培养基中生长良好,薄层层析法（ＴＬＣ）检测海藻糖实验说明转化株细胞诱导后合成海藻糖,ｏｔｓＡ基因的克隆和表达为赋予转基因植物抗高渗、耐干旱能力提供了实验依据和材料。     

基于TAC载体的水稻转化系统的建立

将含有大约50kb水稻基因组片段的TAC17克隆(NK15)通过电击转化到农杆菌LBA4404中,经多次继代培养,该克隆在农杆菌中是稳定的。用常规的农杆菌介导方法将该克隆转化粳稻品种农垦58S成熟胚的愈伤组织,对T0代进行PCR和Southern杂交分析表明,TAC17所携带的50kb外源DNA片段已完整地整合到水稻基因组上,整合方式多数为单位点插入,整合位点是随机的。经T1代分析表明,外源基因可以稳定地遗传,而且进一步确定外源大片段的整合方式为为单位点插入。     

以可转化人工染色体(TAC)载体为基础的百脉根基因组文库的构建及筛选

可转化人工染色体(transformation-competentartificial chromosome,TAC)载体是具有克隆和转移大片段DNA特征的新型载体,是植物基因克隆和转化的有效工具.该研究把它用于豆科植物百脉根(Lotus japonicus)基因组文库的构建.此文库由1.8×105个克隆组成,平均插入片段大小为15kb左右,约覆盖百脉根基因组6倍.文库保存在12块96孔板中,每个孔中约含150个不同的重组克隆.用与花发育相关的同源基因Ljcen1片段为探针,筛选得到6个阳性克隆,酶切后验证这些阳性克隆,结果表明这些克隆含有同一个基因片段.此基因组文库可直接用于植物转化,为百脉根功能基因组的研究打下基础.     

The Arabidopsis TAC Position Viewer: a high‐resolution map of transformation‐competent artificial chromosome (TAC) clones aligned with the Arabidopsis thaliana Columbia‐0 genome

We present a high‐resolution map of genomic transformation‐competent artificial chromosome (TAC) clones extending over all Arabidopsis thaliana (Arabidopsis) chromosomes. The Arabidopsis genomic TAC clones have been valuable genetic tools. Previously, we constructed an Arabidopsis genomic TAC library consisting of more than 10 000 TAC clones harboring large genomic DNA fragments extending over the whole Arabidopsis genome. Here, we determined 13 577 end sequences from 6987 Arabidopsis TAC clones and mapped 5937 TAC clones to precise locations, covering approximately 90% of the Arabidopsis chromosomes. We present the large‐scale data set of TAC clones with high‐resolution mapping information as a Java application tool, the Arabidopsis TAC Position Viewer, which provides ready‐to‐go transformable genomic DNA clones corresponding to certain loci on Arabidopsis chromosomes. The TAC clone resources will accelerate genomic DNA cloning, positional walking, complementation of mutants and DNA transformation for heterologous gene expression.     

用克隆池PCR法筛选小麦-簇毛麦易位系6VS/6AL基因组TAC文库获得抗病基因候选克隆

用根据抗病基因保守区设计的一对简并性引物,从小麦－簇毛麦易位系6VS／6AL cDNA中PCR扩增获得一个具有抗病基因核苷酸结合位点（Nucleotide binding site,NBS）结构特点的DNA片段克隆N7。从小麦－簇毛麦易位系6VS／6AL基因组TAC（Transformation-competent artificial chromosome,TAC）文库的22块96孔板提取所有2112个克隆池（每个池含约1000个克隆）的质粒,再根据N7的核苷酸序列设计一对特异引物,用克隆池PCR（pooled PCR)法经分级筛选从文库中获得一个阳性克隆。以N7为探针,通过Southern杂交证实了该TAC克隆为真正含有抗病候选基因的克隆。研究结果表明克隆池PCR法对克隆数目巨大的基因组文库的筛选很有效。     

Construction and characterization of a transformation-competent artificial chromosome (TAC) library ofZizania latifolia (Griseb.)

The tribe Oryzeae consists of 12 genera and 71 species with a world distribution.Zizania latifolia (Griseb.) Turcz. ex Stapf is included in this tribe and possesses numerous traits valuable for rice breeding, such as disease and insect resistance, cold and flood tolerance, and high grain quality. The genetics and breeding ofZ. latifolia are still in their infancy. To facilitate genomic studies ofZizania, a genomic DNA library was constructed using a transformation-competent artificial chromosome (TAC) vector system. The TAC library contains 91, 584 TAC clones with an average insert size of approximately 45 kb, covering six haploidZizania genome equivalents. Very low signals after hybridization with chloroplast and mitochondrial genes indicate that the TAC library is predominantly composed of nuclear DNA. The TAC clones were stable inE. coli for 100 generations. Clones containing thedihydrodipicolinate synthase (DHPS) gene were screened by pooled PCR. The positive clones can be used forZ. latifolia DHPS gene cloning and functional analysis. The library will be useful in studies of genome structure, gene cloning and evolution of rice.     

Construction and characterization of the transformation-competent artificial chromosome (TAC) libraries of Leymus multicaulis

Transformation-competent artificial chromosome system is able to clone and transfer genes efficiently in plants.In order to clone genes highly tolerant to barley yellow dwarf virus(BYDV),Aphids,drought and salt from Leymus multicaulis,the two TAC genomic libraries I and II were constructed in vector pYLTAC17 and pYLTAC747H/sacB,which contain about 165000 and 236000 recombinant clones sepa-rately.The genome coverage of the two libraries was totally estimated to be about 3―5 haploid genome equivalents,as size selection of genomic DNA fragments was approximately from 9 to 300 kb.Clones of the genomic libraries were collected as bulked pools each containing 500 clones or so,stored in twelve 96-deep-well plates and then were gridding in triplicate onto a high-density colony hybridization filter with a 3×3 pattern using a GeneTAC?G3 arraying robot after being transferred manually into three 384-well plates.Meanwhile 2501 and 2890 clones of Library in pYLTAC17 and in pYLTAC747H/sacB were stored individually in fourteen 384-well plates and then were automatically gridding in duplicate onto a high-density colony hybridization filter with a 6×6 pattern after a replication of plates.Nineteen positive clones were detected by using the probe glutahione reductase gene of L.multicaulis.TAC libraries constructed here can be used to isolate genomic clones containing target genes,and to carry out genome walking for positional cloning.Once the target TAC clones were isolated,they could be immediately transferred into plant genomes with the Agrobacterium system.     

Development of a new transformation-competent artificial chromosome (TAC) vector and construction of tomato and rice TAC libraries

Recent research has shown that BIBAC (binary bacterial artificial chromosome) and TAC (transformation-competent artificial chromosome) vector systems are very useful tools for map-based cloning of agronomically important genes in plant species. We have developed a new TAC vector that is suitable for both dicot and monocot transformation. Using this new TAC vector, we constructed large-insert genomic libraries of tomato and rice. The tomato library contains 96,996 clones (28.3-38.5 kb insert size) and has 3.18 haploid genome equivalents. The rice TAC library has 32.7 kb average insert size and has 9.24 haploid genome equivalents. The quality of these two libraries was tested using PCR to verify genome coverage. Individual clones were characterized to confirm insert integrity by Southern analysis, end sequencing and genetic mapping. To investigate the potential application of these TAC libraries in map-based cloning, TAC constructs containing a 45 kb fragment were introduced into the rice genome via Agrobacterium-mediated transformation. Molecular analysis indicates that the 45 kb fragment was successfully transferred into the rice genome. Although rearrangements of the introduced DNA were detected, 50% of regenerated plants contained at least one intact copy of the 45 kb clone and associated vector sequences. These libraries provide us with a valuable resource to rapidly isolate important genes in tomato and rice.     

可转化人工染色体(TAC)文库载体DNA的制备

对可转化人工染色体(TAC)pYLTAC747NH/sacB文库载体DNA的制备条件进行了较系统的模索和研究.结果表明,该文库载体经碱裂解法提取、QIAGEN Plasmid Mini kit纯化后,可获得较纯净的载体DNA.对其闭环载体DNA分别用不同酶量的Hinid Ⅲ酶切处理,经琼脂糖凝胶电泳检测得出其最佳Hind Ⅲ完全酶切条件为2 U Hind Ⅲ/μg闭环载体DNA、37℃酶切30 min;分别用0.5 MBU和1 MBU HK脱磷酶/μg对其线性载体DNA进行脱磷处理,经电泳和载体自连产物电转化检测表明其适宜的完全脱磷条件为1 MBU HK脱磷酶/μg线性载体DNA,30℃脱磷1 h;将所制备的线性载体DNA与λ DNA/Hind Ⅲ酶切片段进行连接,连接产物转化频率较高,其电转化大肠杆菌DH10B感受态细胞频率可达到9.6×10s.     

野生一粒小麦BAC文库的构建和鉴定

以细菌人工染色体pECBAC1为载体 ,构建了野生一粒小麦 (TriticumboeoticumBoiss)的基因组BAC文库。该文库共包含约 17万个克隆 ,平均插入片段长度为 10 4kb ,按野生一粒小麦基因组为 5 6 0 0Mb计算 ,文库覆盖了约 3倍的该物种基因组。用大麦叶绿体psbA基因和玉米线粒体atp6基因作混合探针 ,检测发现该文库中含细胞器基因组同源序列的克隆数小于 1%。该文库的建成 ,为小麦基因的克隆及基因组学研究提供了技术平台     

野生一粒小麦BAC文库的构建和鉴定

以细菌人工染色体pECBAC1为载体,构建了野生一粒小麦(Triticum boeoticum B oiss)的基因组BAC文库.该文库共包含约17万个克隆,平均插入片段长度为104 kb,按野生一粒小麦基因组为5 600 Mb计算,文库覆盖了约3倍的该物种基因组.用大麦叶绿体psb A基因和玉米线粒体atp6基因作混合探针,检测发现该文库中含细胞器基因组同源序列的克隆数小于1% .该文库的建成,为小麦基因的克隆及基因组学研究提供了技术平台.