BENTHIC DIATOM AUTECOLOGY AND INFERENCE MODEL DEVELOPMENT FROM THE CANADIAN HIGH ARCTIC ARCHIPELAGO1

Diatom assemblages were analyzed from 64 lakes and ponds from Alert, Ellesmere Island and Mould Bay, Prince Patrick Island in the Canadian High Arctic Archipelago. Diverse water chemistry conditions and diatom communities were present in these sites. Small benthic taxa typically dominated diatom communities; however, assemblages were markedly different between Alert and Mould Bay sites in response to disparate water chemistry characteristics in the two regions. The most abundant taxa belonged to the genera Navicula, Cymbella, Achnanthes, Nitzschia, and Pinnularia. Canonical correspondence analysis indicated that pH, specific conductivity, dissolved organic carbon, and total phosphorus were the most important limnological variables in determining species composition. Diatom inference models were developed for pH, specific conductivity, and dissolved organic carbon using weighted averaging and weighted averaging partial least squares techniques; these had root mean square error of prediction/r²_boot values of 0.40/0.77, 0.28/0.70, and 0.24/0.55, respectively. These models are applicable to sites with large ranges of taxonomic and limnological variation and will allow the reconstruction of past changes of climate‐related limnological parameters from biostratigraphic records in future paleolimnological studies.     

Epilithic diatoms as indicators in tropical African rivers (Lake Victoria catchment)

We investigated epilithic diatoms in rivers draining to the Nyanza Bay in Lake Victoria (Kenya) with the aim of determining environmental gradients in the assemblages and testing the usefulness of diatom metrics from temperate regions. Spatial and temporal variations of assemblages were studied in 12 sites of three rivers. Kibos, Nyando, and Kisat rivers contained 224 diatom taxa collected on seven sampling occasions over 4 years. Species richness showed a marginal decrease downstream and was the lowest at sites with high conductivity and ammonia–nitrogen levels. Two-Way Indicator Species Analysis and Canonical Correspondence Analysis revealed two major groups of river sites. Conductivity, alkalinity, turbidity, dissolved oxygen, and silicate were the most important variables influencing species distribution. Ecological diatom metrics of temperate regions and the Specific Pollution sensitivity Index showed good relationships with environmental variables. Both diatom assemblages and averaged indicator values were strong in predicting sites of ecological deterioration and in differentiating an upstream site of better quality (drinking water supply of Kisumu), thereby confirming epilithic diatoms as suitable water quality indicators in equatorial rivers. The use of metrics initially designed for temperate rivers, however, appears less valuable in good quality tropical rivers because potential indicators are not considered.     

Developing and Testing Diatom Indicators for Wetlands in the Casco Bay Watershed, Maine, USA

Diatom indicators of wetland condition were developed and tested by assessing human disturbance, water chemistry, and species composition of benthic, epiphytic, and planktonic diatoms from 20 wetlands sampled for 2 years. One sample from each site was randomly selected to form a development data set, while the rest were used as the test data set. Human disturbance indicated substantial differences among wetlands in hydrologic modification, impervious surface, and potential for non-point source contamination. These landscape alterations were related to increases in pH, non-nutrient ions, and nutrients and decreases in dissolved organic carbon and water color. Pre-existing diatom indicators, calculated with autecological information from lakes and aquatic habitats, correlated highly to relevant water chemistry and human disturbance scores. Weighted average models (WAM) of Cl⁻, conductivity, pH, and alkalinity derived with the Maine development data set correlated to relevant water chemistry and human disturbance of the test wetlands. Diatom assemblage attributes that correlated with human disturbance were selected to combine into a multimetric index of biotic condition (IBC). IBCs and WAMs from benthic and epiphytic diatoms were usually more precisely related to relevant environmental factors than planktonic diatoms. These results showed that human disturbance alkalized wetlands, enriched them with nutrients, and diatom assemblages responded to these changes. Indicator development protocols for streams can be readily adapted for use in wetlands.     

Assessment of mine drainage remediated streams using diatom assemblages and biofilm enzyme activities

A legacy of pre-regulation coal mining in many areas has been acid mine drainage (metal-rich, low pH water). Today, numerous remediation strategies may be implemented, but there is little data on efficacy in restoring biological condition. Two alkaline doser projects in Ohio were assessed using diatom assemblages, and biofilm extracellular enzyme activities (EEA). In one stream, water quality steadily increased downstream of the doser; pH increased from 3.8 to 7.2 and Fe decreased from 107 to 0.42 mg l^?1. Likewise, the periphyton biomass (chl a 7.15–12.77 mg m^?2) increased and periphyton index scores (4–27) improved. As well, EEA data showed greater activity for phosphorus, nitrogen, and one carbon acquisition enzyme. For the other stream, the conductivity remained high (>720 μS cm^?1) and pH and alkalinity decreased downstream. Biological data, including EEA, varied along the stream length with higher numbers in the middle reach, such as chlorophyll a (0.56 to 87.75 to 2.77 mg m^?2), and index scores (7 to 29 to 11). The first remediation site showed positive results in chemistry, biological community and measures of ecosystem function. The second stream was highly variable in these parameters suggesting further AMD inputs are hampering recovery.     

Long-term changes of diatoms and chemistry in headwater streams polluted by atmospheric deposition of sulphur and nitrogen compounds

1. Samples for the analysis of attached diatoms and surface water chemistry were taken at thirty-five stations in sixteen soft-water streams in the Netherlands during autumn 1990. Most were located in pine forest and heathland catchments, fed by deep groundwater (median residence time 87 years), with no direct influence of agricultural or urban drainage water. 2. The chemical data from sixteen stations were compared with data collected in 1974 and 1981. There were no significant increases in pH (6.3 in 1974, 6–4 in 1990) or in sulphate (200 mmol m^?3 in 1974, 229 mmol m^?3 in 1990). Over the same period nitrate increased significantly from 17 to 158 mmol m^?3, while alkalinity decreased significantly from 355 to 251 meq m^?3. 3. The most important correlates with the distribution of diatoms, as revealed by canonical correspondence analysis, were pH, nitrate, cross-sectional area of the stream and the Ca/(Ca + Cl) ratio. 4. Diatom assemblages of upstream stations indicated more acid conditions than those of downstream stations. Also there was considerable variation in the diatom assemblages of different habitats, 5. A diatom-pH transfer function was developed using the weighted-averaging method. The function was applied to comparable pairs of samples which were collected in 1974 and 1990 at ten stations. There was a significant decrease in the median diatom-inferred pH from 6.78 in 1974 to 6.55 in 1990. 6. The diatom assemblages are diverse and contain a high proportion of filamentous diatoms, particularly Aulacoseira crenulata and A. alpigena, which are rare in Western Europe. This is a response to the low current velocity (median 5 cm^?1) and the relatively constant deep groundwater discharge.     

PERIPHYTIC DIATOM ASSEMBLAGES FROM ULTRA‐OLIGOTROPHIC AND UV TRANSPARENT LAKES AND PONDS ON VICTORIA ISLAND AND COMPARISONS WITH OTHER DIATOM SURVEYS IN THE CANADIAN ARCTIC1

Periphytic diatoms are potentially powerful indicators of environmental change in climatically‐sensitive high latitude regions. However, only a few studies have examined their taxonomic and ecological characteristics. We identified and enumerated diatom assemblages from sediment, rock, and moss habitats in 34 ultra‐oligotrophic and highly transparent lakes and ponds on Victoria Island, Arctic Canada. The similar limnological characteristics of the sites allowed us to examine the influence of habitat, independent of water chemistry, on the diatom assemblages. As is typical in shallow arctic water bodies, benthic taxa, including species of Achnanthes, Caloneis, Cymbella, Navicula, and Nitzschia, were most widely represented. Minor gradients in our measured environmental variables did not significantly explain any variance in diatom species, but there were marked differences in diatom assemblages among sites. Pond ephemerality seems to explain some diatom variation, because aerophilic taxa such as Achnanthes kryophila Petersen and A. marginulata Grunow were dominant in shallow sites that had undergone appreciable reductions in volume. We identified several taxa that exhibited strong habitat preferences to sediment, moss, or rock substrates and also found significant differences (P < 0.01) in diatom composition among the three habitats. In comparisons with three similar diatom surveys extending over 1200 km of latitude, we determined that surface sediment assemblages differed significantly (P < 0.001) among all regions examined. Diatom species diversity was inversely related to latitude, a result likely explained by differences in the lengths of growing seasons. These data contribute important ecological information on diatom assemblages in arctic regions and will aid in the interpretation of environmental changes in biomonitoring and paleolimnological studies.     

Applicability of a generic index for diatom assemblages to monitor pollution in the tropical River Tsanwun, Taiwan

A generic index (GI) utilizing epilithic diatom assemblages as abioindicator of water pollution in subtropical rivers in Taiwan was applied toastudy of a tropical river. Seven sites on the River Tsanwun were sampledseasonally from August 1995 to June 1998. Although there is a marked differencein water chemistry between tropical and subtropical rivers in Taiwan, thedominant genera of their diatom assemblages are quite similar. The six generaused for the calculation of GI in the subtropical rivers were also the maincomponents of diatom assemblages in the River Tsanwun. The calculated valuesdisplayed a close correlation with water quality, evaluated on the basis ofphysical and chemical variables. A strong correlation was found between this GIand other diatom-based indices of water quality.     

Impact of Urban Pollution from the Hanoi Area on Benthic Diatom Communities Collected from the Red, Nhue and Tolich Rivers (Vietnam)

The effects of urban pollution from Hanoi city on the benthic diatom communities of the Nhue–Tolich river system were studied during the 2003 dry season. Benthic diatoms were allowed to grow on glass slides suspended in the water flow for 4 weeks. To reveal the relationship between water quality and diatom communities, Canonical correspondence analysis (CCA) was used on data concerning relative abundances of diatom species and environmental variables. Two diatom indices, IPS and DAIpo, were applied to evaluate water quality in the three rivers. A total of 291 diatom taxa were found in the Red, Nhue and Tolich Rivers. These were mainly cosmopolitan taxa, with some tropical, subtropical and endemic taxa. The most abundant taxa at the Red site were Aulacoseira granulata, Achnanthidium minutissimum, Encyonema minutum, Navicula recens and other halophilous taxa such as Nitzschia kurzii, Seminavis strigosa, Entomoneis paludosa, Bacillaria paradoxa. Diatom assemblages at the Tolich site consisted mainly of Nitzschia umbonata, Nitzschia palea and Eolimna minima. Diatom density ranged from 660 to 30,000 cells/cm². Environmental variables and diatom assemblage composition at all sites were significantly correlated. Two diatom indices gave similar results and indicate the Tolich River with the lowest values as a highly polluted site.     

171 Light-Induced Growth of Winter Phytoplankton Collected from the Benthic Boundary Layer in Coastal Oregon Waters

The objective of this study was to examine the influences of the adjacent river and surrounding landuse on wetland diatom distributional patterns. Diatoms were identified in surface sediment samples from 35 riverine-impounded wetlands within the Willamette Valley, OR. A total of 221 species were identified and no single species dominated the assemblage at all sites. Diatom richness was high throughout the area (median 71, range 66–75). The Araphidineae:Centrales index, a measure of periphytic to planktonic species ratio, was lowest at sites within the river's annual floodplain zone. A low A:C index is to be expected at wetlands that receive inputs of river planktonic species through regular flooding by adjacent large rivers. Surrounding landuse can confound the influence of riverine flooding on wetland diatom assemblages by influencing water quality. Relative abundance of the two most common species, Aulacoseira crenulata and Fragilaria capusina related negatively to % agricultural landuse surrounding the wetland. These results indicate that riverine wetland diatom assemblages may be influenced by flooding from adjacent rivers and surrounding landuse and therefore wetland sediment diatoms might serve as useful indicators of both historical environmental changes in nearby large rivers and surrounding watersheds.     

FACTORS INFLUENCING DIATOM DISTRIBUTIONS IN CIRCUMPOLAR TREELINE LAKES OF NORTHERN RUSSIA

Diatom assemblages and limnological data were analyzed from 74 lakes spanning arctic treeline in three geographical regions of northern Russia: near the mouth of the Pechora River, on the Taimyr Peninsula, and near the mouth of the Lena River. Analysis of similarities indicated that diatom assemblages in tundra and forest lakes were significantly different from each other in all regions, with tundra lakes generally associated with higher abundances of small benthic Fragilaria Lyngbye taxa. Canonical correspondence analysis identified variables related to ion concentrations (e.g. Na ⁺ , dissolved inorganic carbon), lake depth, silica concentrations, and surface water temperatures as factors that explained significant amounts of variation in the diatom assemblages. Across treeline, the generally higher surface water temperatures of the forested lakes consistently accounted for a significant proportion of the diatom distribution patterns. Major ion concentrations also explained significant amounts of variation in the diatom assemblages across treeline for all three regions; however, regional trends were most likely influenced by local factors (i.e. ocean proximity or anthropogenic activities). The importance of climatic gradients across treeline (e.g. temperature) diatom distributions provides additional evidence that diatoms may be useful as paleoclimatic indicators. However, combination of the three calibration sets revealed that local water chemistry determinants (e.g. lithology, marine influence) overrode the influence of climatic gradients in explaining diatom distributions, suggesting that regional differences must be minimized for successful combination of geographically separate calibration sets.     

Diatoms as a proxy in reconstructing the Holocene environmental changes in the south-western Baltic Sea: the lower Rega River Valley sedimentary record

This study focuses on diatom assemblages occurring in cores of Late-glacial and Holocene deposits retrieved from the mouth of the lower Rega River valley, of the southern coast of the Baltic Sea. Sediment samples from four cores were the subject of the present study. Diatom-inferred environmental characteristics, e.g., water level; water salinity (conductivity), trophic status and pH, within each core are presented. Diatom assemblage zones (DAZ) were distinguished, based on differences in the distribution of particular ecological groups. Each DAZ appears to be related to environmental changes during the deposition of a given sediment interval. The Late-glacial (Allerød) sediments originated in a shallow lake with increasing concentrations of solutes and nutrients. The Holocene record begins in the early Atlantic Chronozone and the diatoms point to weakly brackish-water sediments deposited in a shallow water environment. During the period of 8,500–5,800 cal year BP sedimentation took place in a shallow embayment and/or lagoon. From ca. 5,800 cal year BP onwards sedimentation took place in a peat bog environment alternating with Aeolian deposition. Changes in diatom community structure imply a close relationship with the climate-controlled eustatic rise of the ocean level and its consequence Littorina transgression. As with other southern Baltic Sea localities, brackish-water diatoms appear in the sediments, signaling the onset of marine transgression somewhat earlier than previously accepted. Differences and similarities in diatom assemblages and the palaeogeographic development of nearby regions within the Baltic Sea basin and lagoons (coastal areas) from different geographic regions, are also discussed.     

Evaluating diatom community composition in the absence of marked limnological gradients in the high Arctic: a surface sediment calibration set from Cornwallis Island (Nunavut,Canada)

Fossil diatom assemblages preserved within the sedimentary record in Arctic lakes provide the potential to reconstruct past changes in important limnological variables. During the summers of 1992 and 1993, we examined previously unstudied freshwater ecosystems on Cornwallis Island, Arctic Canada, with the specific objectives of (1) documenting the limnology and modern diatom assemblages from this region, and (2) determining which environmental variables most influence diatom species distributions. The Cornwallis Island study sites displayed the least amount of variance in measured water chemistry variables in comparison to nearly all of our labs’ previous freshwater surveys in the Arctic. The small limnological gradients precluded the development of a statistically robust diatom inference model, but perhaps more importantly, allowed us to explore variations in diatom composition in the absence of marked variations in water chemistry. Diatom species turnover was minimal, with the most common diatom taxa being Achnanthidium minutissima, Nitzschia perminuta, N. frustulum, with lesser percent abundances of Chaemaepinnularia soehrensis, Navicula chiarae, Psammothidium marginulata, and A. kryophila. A small number of study sites differed from the majority with respect to water chemistry (e.g., coastal sites with high specific conductivities) and habitat availability (e.g., ephemeral ponds with extensive moss habitats), and these sites had markedly different diatom assemblages. These data reinforce previous observations that water chemistry and other climate-related factors are the primary environmental controls influencing diatom distributions at high latitudes. Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

170 Wetland Diatom Assemblages as Indicators of Flooding Influence and Surrounding Landuse in the Willamette Valley,OR

The objective of this study was to examine the influences of the adjacent river and surrounding landuse on wetland diatom distributional patterns. Diatoms were identified in surface sediment samples from 35 riverine‐impounded wetlands within the Willamette Valley, OR. A total of 221 species were identified and no single species dominated the assemblage at all sites. Diatom richness was high throughout the area (median 71, range 66–75). The Araphidineae:Centrales index, a measure of periphytic to planktonic species ratio, was lowest at sites within the river's annual floodplain zone. A low A:C index is to be expected at wetlands that receive inputs of river planktonic species through regular flooding by adjacent large rivers. Surrounding landuse can confound the influence of riverine flooding on wetland diatom assemblages by influencing water quality. Relative abundance of the two most common species, Aulacoseira crenulata and Fragilaria capusina related negatively to % agricultural landuse surrounding the wetland. These results indicate that riverine wetland diatom assemblages may be influenced by flooding from adjacent rivers and surrounding landuse and therefore wetland sediment diatoms might serve as useful indicators of both historical environmental changes in nearby large rivers and surrounding watersheds.     

Benthic diatoms as indicators of long-term changes in a watershed receiving passive treatment for acid mine drainage

Between 1995 and 2003, 15 reclamation projects using passive treatment systems were installed in a 70-km² watershed to reduce acid mine drainage (AMD) impacts from coal mining. Six stream sites were sampled for water chemistry and benthic diatoms on 15 dates from 1996 to 2005; 1 unimpacted reference stream, 4 downstream of treatment systems, and 1 AMD-impacted site with no treatment. Our objective was to determine if diatom communities have responded to restoration by comparing temporal trends at sites downstream of treatment to concurrent trends at untreated and reference sites. Water chemistry at the sites corresponded spatially to AMD sources within the watershed. All sites below treatment had a significant increase in pH. Diatom communities provided several lines of evidence that treatment had lessen AMD impacts over the 10 year study: (1) the percentage of circumneutral taxa significantly increased at 3 of the 4 sites below treatment; (2) the percentage of circumnuetral taxa averaged for all sites below treatment increased significantly; and (3) temporal changes in community composition were significantly directional for 3 of 4 treated sites, becoming progressively more similar to reference communities. This study emphasizes the importance of long-term data sets for assessing recovery of streams following large-scale restoration.     

Diatom, chrysophyte and protozoan distributions along a latitudinal transect in Fennoscandia

Diatoms, chrysophyte scales and cysts, and the siliceous plates of thecoamoebae were studied from the surface sediments of 20 freshwater habitats in Fennoscandia The study sites are distributed along a latitudinal transect extending from southern Finland to northern Norway, spanning boreal forest through arctic tundra vegetational zones Diatom assemblages were usually dominated by acidophilic, periphytic members of the genera Achnanthe, Fragilaria and Navicula Marked shifts in diatom assemblage composition were recorded along the latitudinal transect, whereas scaled chrysophytes were rare in all study sites Meanwhile, siliceous protozoa were common, but did not exhibit any noticeable trends in assemblage composition with changing latitude A comparison of the Fennoscandian diatom assemblages with those recorded from freshwater sites near Yellowknife (central Northwest Territories, Canada) revealed similar trends in diatom assemblage composition with changing ecoclimatic zones in both regions Moreover, canonical correspondence analysis showed that diatom assemblages in cold, dilute tundra sites were effectively separated from sites with forested catchments from both the Fennoscandian and Canadian transects The general similarity between the two regions suggests that autecological data and the resulting environmental transfer functions based on diatom assemblages may eventually be joined from North American and European regions     

PERIPHYTIC DIATOM ASSEMBLAGES FROM HIGH ARCTIC PONDS1

Epiphytic, epilithic, and surface sediment diatom assemblages were identified and enumerated from 35 study ponds on CapeHerschel (78°37″N, 74°42″W), east-central Ellesmere Island, Canada. All the sites are shallow (maximum depth <2 m), clear, oligotrophic, and freshwater. The ponds freeze completely for 10 months of the year. Major ion concentrations are relatively similar among the 35 sites, although environmental gradients exist. Over 130 diatom taxa from 28 genera were identified in the periphyton samples. Marked differences in species composition were evident among the ponds. Moreover, many of the diatoms exhibited varying degrees of microhabitat specificity. Variance partitioning by canonical correspondence analysis showed that 26% of the total variance exhibited by diatom species composition could be accounted for by the measured environmental variables (i.e. 10.2% by habitat and 15.8% by water chemistry). Pondwater alkalinity best explained the distribution of taxa, and weighted averaging regression and calibration were used to develop a transfer function to infer pondwater alkalinity from the diatom assemblages. Other important environmental variables included [Na⁺] for the epilithic and [SiO₂] for the epiphytic assemblages.     

Multivariate analysis of diatoms and water chemistry in Bolivian saline lakes

Diatom assemblages are described from surface sediments in thirteen salt lakes located in the southern Bolivian Altiplano. Factor analysis of correspondences and cluster analysis are used to classify the diatom assemblages. New methods are proposed to establish the qualitative and quantitative relationships between diatom floras and ecological parameters. Diatom assemblages are linked more to the ionic elements than to the salinity, pH, depth, temperature or elevation. Environmental variables are divided into three modalities which allow considerations of many different variables not under the same units.     

RELATIONSHIPS OF SEDIMENTED DIATOM SPECIES (BACILLARIOPHYCEAE) TO ENVIRONMENTAL GRADIENTS IN DILUTE NORTHERN NEW ENGLAND LAKES1

Limnological gradients of small, oligotrophic, and low conductance lakes in northern New England were defined by principal components analysis; relationships of sedimented diatom species to the gradients were investigated by correlation analysis. Diatom distributions were most strongly related to the gradient of pH and alkalinity and the covarying variables, conductance, Mg, Ca, total Al, and exchangeable Al. Weaker relationships to lake morphology, dissolved organic carbon and water color, altitude and marine aerosol inputs, and the distinctive water chemistry of some New Hampshire lakes were also present. Results for 16 taxa of importance in our studies of lake acidity are given in detail and are compared to results from other regions of eastern North America. Planktonic taxa were absent below pH 5.5, with the exception of the long form of Asterionella ralfsii var. americana Korn. The two forms of this taxon differed ecologically: the long form (>45μm) had an abundance weighted mean (AWM) pH 4.90 and occurred mostly in lakes that were deep relative to transparency; the short form (<45μm)had an AWM pH and occurred on lakes that were shallow relative to transparency. The ecological advantage of a “splitter” approach to diatom taxonomy was demonstrated by examination of other taxa as well, including Tabellaria flocculosa (Roth) Kütz. These results have important implications for paleolimnological interpretations.     

Benthic macroinvertebrate communities in five rivers of the Coastal Hudson Bay Lowland

As a precursor to developing a biomonitoring program for rivers of the Coastal Hudson Bay Lowland, this study characterized and compared the benthic macroinvertebrate communities and water chemistry in 5 remote, previously undescribed, rivers near Fort Severn, Ontario, Canada. The pH of river water ranged from 8.1 to 8.7, total phosphorus from 11 to 26 μg L^?1, dissolved organic carbon from 8 to 12 mg L^?1, and chloride from 56 to 153 mg L^?1. A total of 57 benthic macroinvertebrate taxa were represented, and the 10 most numerically dominant were the Chironominae (26 % of collected individuals), Orthocladiinae (16 %), oligochaetous clitellata (9 %), Hyalellidae (7 %), Hydropsychidae (6 %), Gammaridae (5 %), Elmidae (5 %), Sphaeriidae/Pisidiidae (4 %), Nemata (3 %), and Tanypodinae (3 %). Rivers’ positions in ordinations of chemical and biological datasets were similar, suggesting that water chemistry has a role in structuring riverine benthic communities in the study region. Correlations between water-chemistry or habitat predictors and site-scores in the ordination of benthic macroinvertebrate taxa counts suggested that biological community structure was most associated with river-water pH, nutrient concentrations (e.g., total phosphorus, nitrogenous compounds, dissolved organic carbon, calcium, and silicate), the relative abundance of submerged macrophytes, conductivity (i.e., the concentrations of chloride and various other dissolved ions), and several geomorphological variables (e.g., bank-full river width, current speed, and the size of the dominant inorganic particles in the pavement layer of the streambed). Interest in mineral extraction and other resource-based exploration in Ontario’s Far North is increasing. This study represents a start on baseline characterization for ecological monitoring and cumulative effects assessment that should proceed along with northern development.     

Distribution of Epilithic Diatoms in Response to Environmental Conditions in an Urban Tropical Stream, Central Kenya

Use of diatoms in monitoring water quality is well acknowledged in developed countries, but only recently has the assessment started gaining importance in developing countries. Diatoms can be obtained from natural and artificial substrates. Appreciating the differences and similarities of diatom assemblages on both substrates may contribute to a better understanding and standardization particularly during monitoring of water quality. During this study we assessed diatom assemblages, biodiversity and trophic indices in relation to water quality along the Nairobi River. Fifteen sites were sampled in September 2000 during the dry season. Diatoms were collected from natural substrates (stones, pebbles) and artificial substrates (100% acrylic wool). On artificial and natural substrates, a total of 190 and 151 taxa were found, respectively, the majority of these taxa (80%) have cosmopolitan distribution and are also widespread throughout tropical African. Species composition changed downstream, five taxa dominated upper and mid stream sites whereas lower stream sites were dominated by one or two taxa. Species richness, diversity, dominance and evenness were positively correlated with NO₃, O₂ and altitude but decreased markedly downstream with a simultaneous increase in total dissolved solids, alkalinity, chemical oxygen demand and PO₄. Ordination and classification (CANOCO and TWINSPAN) showed that diatom assemblages in the Nairobi River responded strongly to water quality changes with respect to concentrations of NO₃, NO₂, total dissolved solids and temperature. Taxa common at less impacted upstream sites included Gomphonema gracilis, Anomoeoneis brachysira and Fragilaria biceps; while common taxa at midstream sites with agricultural catchments were Gomphonema parvulum, Navicula cryptocephala, N. schroeteri, N. bryophila, N. halophila, Nitzschia linearis var. linearis and Cymbella silesica. Achnanthes minutissima var. saprophila, Gomphonema angustum, Navicula subminuscula, N. arvensis, Nitzschia palea and N. umbonata were most common at urban sites, which were polluted by residential and industrial effluents. Trophic diatom indices suggested that water quality was poor at most sites in the Nairobi River. Most sites along the river had low Generic Diatom Index values, GDI (<12) and high Trophic Diatom Index values, TDI 73–78 (median = 76) and 75–84 (median = 77) for artificial and natural substrates, respectively. This study showed that diatoms' response on natural and artificial substrates were similar and reflected environmental conditions correctly.