基于多组织稳定同位素比值的热带大西洋4种鲨鱼营养生态位分化

不同代谢速率组织间的碳、氮稳定同位素比值(δ¹³C和δ¹⁵N)可以反映生物不同时间尺度的摄食信息,对探讨物种间摄食、栖息地利用和营养生态位的变化具有重要的指示作用。本研究以在大西洋热带海域兼捕的大青鲨、长鳍鲭鲨、拟锥齿鲨和尖吻鲭鲨为对象,通过测定其肌肉、肝脏和血液的δ¹³C和δ¹⁵N值,探讨4种鲨鱼营养生态位分化。结果表明: 与长鳍鲭鲨相比,尖吻鲭鲨、拟锥齿鲨和大青鲨的δ¹⁵N值相似且相对较高;大青鲨与其他鲨鱼存在摄食隔离,表现出独特的营养生态位;尖吻鲭鲨营养生态位宽幅最大,摄食食物种类和(或)栖息环境类型更多样化,其与拟锥齿鲨的营养生态位重叠度最高,说明两种鲨鱼具有潜在的资源竞争关系。尖吻鲭鲨、拟锥齿鲨和大青鲨组织间的δ¹³C、δ¹⁵N差值与其叉长均无显著相关关系,说明3种鲨鱼近期内无明显摄食变化;而长鳍鲭鲨的肝脏、血液和肌肉组织的δ¹⁵N差值与叉长显著相关,说明长鳍鲭鲨在短期内存在摄食变化。肝脏和血液的δ¹³C、δ¹⁵N值的相似性反映了两种组织整合摄食时间周期相近,其较高的代谢速率可以反映相对短时间周期的摄食信息。     

同域分布中华鬣羚与中华斑羚时空生态位特征

为了解同域分布有蹄类在环境复杂的山地森林生境中以何种方式维持种间关系以实现稳定共存,基于物种分布模型与日活动模式分析了四川省岷山、邛崃、大相岭、小相岭和凉山五大山系同域分布中华鬣羚(Capricornis milneedwardsii)与中华斑羚(Naemorhedus griseus)的时空生态位特征。结果显示:(1)在四川省五大山系,中华鬣羚的适宜栖息地面积为28006.07 km²,占研究区总面积的26.18%,其中高适宜栖息地面积为10015.90 km²,中华斑羚的适宜栖息地面积为21073.32 km²,占研究区总面积的19.71%,其中高适宜栖息地面积为8396.22 km²;(2)中华鬣羚与中华斑羚在生境因子选择上相似性高、栖息地重叠面积大,其空间生态位重叠度指数D=0.776,I=0.949,其适宜栖息地的主要重叠区域位于岷山和邛崃山系;(3)中华鬣羚与中华斑羚的日活动节律重叠指数为0.812;(4)中华鬣羚与中华斑羚属于同域分布的资源利用型竞争物种,中华鬣羚的存在会显著影响中华斑羚的日活动节律(P=0.016);二者同域分布时都会增加其昼间活动强度,并增加活动高峰期的强度及持续时间。本研究初步分析了中华鬣羚与中华斑羚的时空生态位特征,揭示了二者在空间、时间生态位上种群共存及种间竞争的耦合关系。研究有利于深入理解同域分布动物时空生态位特征、近缘物种的共存机制及种间竞争关系,为有蹄类等珍稀野生动物种群及栖息地的保护提供科学参考。     

梭菌属分类研究进展:现状和展望

目前构成梭菌属的微生物在系统发育和表型特征上不一致。多相分类数据表明,梭菌属物种之间差异大。大量基于16S rRNA 基因的系统发育研究表明,梭菌属应被限定为梭菌属类群I,作为狭义梭菌属(Clostridium sensu stricto)。尽管有这方面认识,梭菌属新物种仍持续增加,这些新物种并不能与梭菌属类群I 和标准种丁酸梭菌(C. butryicum)形成一致分支,引发梭菌属分类上的混乱。本文明确了梭菌属物种的范围,即只包括模式种和梭菌属类群I。此外,4 个物种念珠状真杆菌(Eubacterium moniliforme)、旋舞真杆菌(Eubacterium tarantellae)、最大八叠球菌(Sarcina maxima)和胃八叠球菌(Sarcina ventriculi)应被调至梭菌属,分别命名为念珠状梭菌(Clostridium moniliforme)、旋舞梭菌(Clostridium tarantellae)、最大梭菌(Clostridium maximum)和胃梭菌(Clostridium ventriculi)。一个新属哈撒韦氏菌属(Hathewaya)被提议成立,3 个梭菌属物种溶组织梭菌(Clostridium histolyticum)、泥渣梭菌(Clostridium limosum)和解朊梭菌(Clostridiumproteolyticum)重新归为溶组织哈撒韦氏菌(Hathewaya histolytica)、泥渣哈撒韦氏菌(Hathewaya limosa)和解朊哈撒韦氏菌(Hathewaya proteolytica),其中Hathewaya histolytica 为模式种。     

阿拉善荒漠区两种优势跳鼠种间营养生态位

营养生态位作为生态位理论的重要维度之一，不仅能够表现出物种的营养需求特征，而且可以反映物种在生态系统中的营养层级、功能地位以及物种间的营养关系。动物不同组织中的碳、氮稳定同位素比值可反映某一物种在不同时间段的食性信息，因而对探讨物种间摄食、栖息地资源利用和营养生态位的变化具有重要指示作用。以2017年在阿拉善荒漠实验区采用铗日法所捕获的三趾跳鼠（Dipus sagitta）和五趾跳鼠（Allactaga sibirica）为研究对象，测定其脱脂毛发与骨骼组织的δ¹³C和δ¹⁵N比值，分析探讨2种小型啮齿动物的营养级与营养生态位变化以及摄食策略与资源分配机制。结果表明：无论从长期时间尺度（一生）还是短期时间尺度（季节）分析，结果都一致表现出三趾跳鼠与五趾跳鼠种间营养生态位重叠面积（OA）值为0‰²，种间营养生态位发生分离；三趾跳鼠的营养级显著低于五趾跳鼠的营养级，但其营养生态位面积却大于五趾跳鼠；随着季节的变化，三趾跳鼠与五趾跳鼠的摄食范围和营养生态位面积均呈现出春季最大，夏季减小，秋季再增加的趋势。两种跳鼠的营养生态位变化与摄食策略符合生态位分化假说，二者通过种间营养生态位分化实现同域共存。     

热带珊瑚岛不同生活型植物叶片性状及其生态适应性意义

为探究热带珊瑚岛植物对高温、高光照、土壤贫瘠生境的适应性,对热带珊瑚岛不同生活型植物叶片功能性状及其生态适应策略差异进行研究。结果表明,不同生活型植物叶片全N、纤维素含量,C/N、水分利用效率和比叶面积存在显著差异;叶片功能性状间的显著相关性表明植物在资源分配和生长投资间存在权衡;不同物种在珊瑚岛生境中采取不同的生态策略,且呈现明显趋异性。在热带珊瑚岛植被恢复实践中,可优先选择的乔木树种为抗风桐(Pisonia grandis),灌木为银毛树(Tournefortia argentea),但同时要防范飞机草(Chromolaena odorata)、孪花蟛蜞菊(Wollastonia biflora)和南美蟛蜞菊(Sphagne- ticola trilobata)的扩张。     

青岛近海路氏双髻鲨群体遗传学分析

研究采集了青岛近海23尾路氏双髻鲨(Sphyrna lewini), 通过线粒体DNA控制区片段对其遗传多样性进行分析。研究结果显示: 在23个个体的控制区序列上存在13个变异位点, 未检测到插入/缺失位点; 检测到7个单倍型, 其中3个为个体共享单倍型(Hap1、Hap3和Hap5), 4个为个体独有单倍型; 青岛近海路氏双髻鲨呈现中等水平的单倍型多样度和较低的核苷酸多样度; 与已报道的日照、霞浦群体间的遗传分化指数F_st值分别为–0.0571和–0.0328, 表明青岛群体与其他两个群体间不存在显著差异。以Sphyrna zygaena为外群构建NJ系统树显示本研究中7个单倍型共分成两支, 分别与来自太平洋、印度洋的单倍型类群聚类。中国近海的路氏双髻鲨作为一个具有较低遗传多样性的濒危物种, 其资源保护更应该引起足够的重视。     

姜状三七根茎的皂苷类化学成分研究

为了解姜状三七(Panax zingiberensis)根茎的皂苷类化学成分,采用正相硅胶、反相硅胶和凝胶等色谱方法从其根茎的乙醇提取物中得到9个皂苷类化合物,根据理化性质和波谱数据,其结构分别鉴定为人参皂苷SL₁ (1)、人参皂苷Rh₁ (2)、三七皂苷R₈ (3)、竹节参皂苷IVa (4)、越南人参皂苷R₁₀ (5)、人参皂苷Rg₁ (6)、菠菜皂苷A 28-O-β-d-葡萄糖苷 (7)、齐墩果酸28-O-β-d-葡萄糖苷 (8)和姜状三七苷R₁ (9)。化合物1、3、5、7和8为首次从该植物中分离得到, 其中化合物5为奥克梯隆醇型皂苷,此类皂苷在该植物中未见报道。     

东太平洋中部中上层鲨鱼群落营养生态位分化

鲨鱼在大洋生态系统中占据着重要的生态地位,其作为顶级捕食者,通过下行效应直接影响生态系统的稳定.稳定同位素技术是目前研究摄食生态学强有力的手段之一,可利用碳氮稳定同位素在食物网中的特性分别指示鲨鱼的食物来源和营养级.本研究选取8种130尾采集自东太平洋中部的中上层鲨鱼,应用稳定同位素绘制其种群生态位图谱,比较不同种群间的生态地位及资源分配方式上的差异.结果表明:不同鲨鱼种群碳、氮稳定同位素比值存在显著差异;8种鲨鱼在东太平洋生态系统中的营养级为4.3~5.4,大青鲨、尖吻鲭鲨与其他6种鲨鱼存在摄食隔离,表现出独特的营养生态地位.这些结果充分证明大洋性中上层鲨鱼并非生态系统的冗余种,其营养生态位的独特性不会被其他捕食者简单地替代和弥补.     

浙江南部近海前肛鳗营养生态位变化研究——基于稳定同位素技术

基于2016年和2020年浙江南部近海收集的71尾前肛鳗样品,通过测定碳氮稳定同位素比值计算其营养生态位指标,对比分析前肛鳗不同发育过程、不同季节及不同年份营养生态位的差异,探究营养生态位的变动规律及对资源的利用情况。结果表明：（1）2016年和2020年前肛鳗平均δ¹³C值分别为（-15.19±0.31）‰、（-15.90±0.45）‰;平均δ¹⁵N值分别为（12.42±0.45）‰、（12.92±0.25）‰;（2）单因素方差分析表明,2016年前肛鳗不同发育过程δ¹³C值差异不显著（P>0.05）,δ¹⁵N值差异显著（P<0.05）,不同季节间δ¹³C值和δ¹⁵N值均存在显著差异（P<0.05）,而2020年前肛鳗不同发育过程δ¹³C值和δ¹⁵N值差异均不显著（P>0.05）,不同季节间δ¹³C值存在显著差异（P<0.05）,δ¹⁵N值差异不显著（P>0.05）;（3）从个体发育来看,2016年前肛鳗有向高营养级饵料生物摄食的趋势,而2020年前肛鳗摄食特化现象不明显,但均随个体发育过程生态位宽幅逐渐减小,表明个体发育过程营养生态位会出现资源竞争共存分化现象;（4）种群营养多样性指标结果显示前肛鳗在秋、冬两季食物来源较春、夏两季更广泛,春季营养多元化程度与秋季相似,夏季营养多元化程度与冬季相似,各季节间营养生态位重叠较小,存在明显的时间分化现象;（5）2020年前肛鳗种群营养结构多样性指标相比2016年均出现不同程度的降低,两年的SEAc未发生重叠现象。由于种内种间的竞争压力,研究发现前肛鳗在个体发育过程及不同时间段都出现了营养生态位分化现象,从而达到维持物种共存、保持食物网结构稳态的目的。     

西南地区6种魔芋属植物基于cpDNA序列的遗传多样性研究

研究野生作物资源的遗传变异及分化机制对种质资源的收集与改良具有重要意义。魔芋是我国西南地区的特色经济作物,但由于受到人为活动干扰,野生种群不断衰退。为评估西南地区魔芋属(Amorphophallus)野生群体的遗传多样性,探究代表性物种的系统发育地位,该研究利用3个叶绿体DNA(cpDNA)片段,分析了魔芋6个物种的遗传多样性,重建了种间系统发育关系。结果表明:(1)西南地区野生魔芋群体的遗传多样性普遍较低,虽然单倍型多样性(H_d)均值为0.428,但近一半群体只有1个单倍型,6个物种整体水平上的单倍型多样性在0.704到0.983之间。(2)在6个物种间检测到高水平的遗传分化,遗传分化系数(F_ST)值在0.481到0.967之间。(3)系统发育分析表明,选取的27个魔芋种主要聚成3个分支:非洲分支、东南亚分支和东亚大陆分支。疣柄魔芋(A. paeoniifolius)隶属于东南亚分支,而东亚大陆分支A包含花魔芋(A. konjac)和西盟魔芋(A. krausei),东亚大陆分支B由东亚魔芋(A. kiusianus)、滇魔芋(A. yunnanensis)和东京魔芋(A. tonkinensis)构成。生境隔离与人为干扰造成了西南地区野生魔芋群体较低的遗传多样性,魔芋属东亚大陆分支的分化可能与早期的快速扩张和生态适应有关。该研究为西南地区魔芋资源的合理保护、可持续利用和杂交育种提供了参考资料。     

Ventricle morphology in pelagic elasmobranch fishes

Ventricle weights of the warm-bodied great white shark, Atlantic shortfin mako, and the common thresher shark (the latter presumed to be warm-bodied) are similar to those of ectothermic blue sharks, sandbar sharks, dusky sharks, tiger sharks and scalloped hammerhead sharks. Ventricle muscularity, as estimated by the ratio of cortical to spongy layer thickness, is almost twice as great in the former three species than in the latter elasmobranchs. Measurements of ventricular volumes suggest that the ventricles of the great white, Atlantic shortfin mako and common thresher sharks are better adapted to respond to demands for increases in cardiac output via increased heartbeat frequency in comparison with ectothermic species of shark.     

New insights on the trophic ecology of blue (Prionace glauca) and shortfin mako sharks (Isurus oxyrinchus) from the oceanic eastern South Pacific

The blue shark (Prionace glauca) and the shortfin mako shark (Isurus oxyrinchus) are two large and highly migratory sharks distributed in most oceans. Although they are often caught in the south Pacific Ocean long-line fisheries, their trophic ecology is poorly understood. Stable isotopes with Bayesian mixing and dependence concentration models were performed to determine the diet and trophic differences between the two species in the South-eastern Pacific Ocean. According to the mixing models, fishes are the most important prey of these sharks. Dolphin calves and remains were found in the stomachs of both species, which represents a novel finding in trophic ecology of South Pacific sharks. Intra-specific differences were found in P. glauca, but not in specimens of I. oxyrinchus. The two sharks showed a high degree of diet overlap (73%), primarily over mackerel and dolphin carcasses. Our results indicate that blue and shortfin mako sharks have a generalist feeding strategy in the eastern Pacific Ocean, with a strong preference for teleost fishes and also for dolphin carcasses. Therefore, trophic studies are useful to understand energy flow through the food web, and the trophic position of key species.     

Diet composition,feeding niche partitioning and trophic organisation of large pelagic predatory fishes in the eastern Arabian Sea

Information on the ecology and feeding behaviour of the large oceanic predatory fishes is crucial for the ecosystem approaches to fisheries management models. Co-existing large pelagic predators in the open oceans may avoid competition for the limited forage by resource partitioning on spatial, temporal or trophic levels. To test this, we studied the prey species composition, diet overlap, trophic level, and trophic organisation of 12 large predatory fishes co-existing in the eastern Arabian Sea. Stomach contents of 1,518 specimens caught by exploratory longline operations in the Indian Exclusive Economic Zone during the years 2006–2009 were analysed. Finfishes were dominant prey of all species except blue marlin (Makaira nigricans) and yellowfin tuna (Thunnus albacares), which fed mainly on cephalopods, and long-snouted lancetfish (Alepisaurus ferox) and pelagic stingray (Pteroplatytrygon violacea), which fed mainly on crustaceans. Common dolphinfish (Coryphaena hippurus) and yellowfin tuna fed on a wider variety of prey than the other species, while the diets of lancetfish and black marlin (Istiompax indica) were narrowest. Pelagic stingray and great barracuda (Sphyraena barracuda) fed on species occupying epipelagic waters, whereas the contribution of mesopelagic prey was higher in the diets of swordfish (Xiphias gladius) and pelagic thresher (Alopias pelagicus). Trophic levels of these fishes ranged from 4.13 to 4.37. Diet overlap index revealed that some of the large pelagic predatory fishes share common prey species. Cluster analysis of the diets revealed four distinct trophic guilds namely ‘flyingfish feeders’ (common dolphinfish and great barracuda); ‘mesopelagic predators’ (pelagic thresher and swordfish); ‘crab feeders’ (lancetfish, pelagic stingray and silky shark) and ‘squid feeders’ (yellowfin tuna, Indo-Pacific sailfish (Istiophorus platypterus), skipjack tuna (Katsuwonus pelamis), black marlin and blue marlin). Large predatory fishes of the eastern Arabian Sea target different prey types, and limit their vertical extent and time of feeding to avoid competing for prey.     

The Species and Origin of Shark Fins in Taiwan’s Fishing Ports,Markets, and Customs Detention: A DNA Barcoding Analysis

The increasing consumption of shark products, along with the shark’s fishing vulnerabilities, has led to the decrease in certain shark populations. In this study we used a DNA barcoding method to identify the species of shark landings at fishing ports, shark fin products in retail stores, and shark fins detained by Taiwan customs. In total we identified 23, 24, and 14 species from 231 fishing landings, 316 fin products, and 113 detained shark fins, respectively. All the three sample sources were dominated by Prionace glauca, which accounted for more than 30% of the collected samples. Over 60% of the species identified in the fin products also appeared in the port landings, suggesting the domestic-dominance of shark fin products in Taiwan. However, international trade also contributes a certain proportion of the fin product markets, as four species identified from the shark fin products are not found in Taiwan’s waters, and some domestic-available species were also found in the customs-detained sample. In addition to the species identification, we also found geographical differentiation in the cox1 gene of the common thresher sharks (Alopias vulpinus), the pelagic thresher shark (A. pelagicus), the smooth hammerhead shark (Sphyrna zygaena), and the scalloped hammerhead shark (S. lewini). This result might allow fishing authorities to more effectively trace the origins as well as enforce the management and conservation of these sharks.     

Stomach content analysis of juvenile, scalloped hammerhead shark Sphyrna lewini captured off the coast of Mazatlán, Mexico

We quantified the diet of juvenile, scalloped hammerhead shark Sphyrna lewini in the area off Mazatlan, Sinaloa, Mexico, to understand their feeding ecology this shark. The prey species of Sphyrna lewini were identified and quantified from stomach content analysis. In addition, we determined the variations between genders. During two fishing seasons (2000–2001 and 2001–2002), we analyzed 232 stomachs, of which 85% contained food. The trophic spectrum was composed of three species of cephalopods, six of crustaceans and 19 species of fish from mainly pelagic and benthic habitats. According to the Index of Relative Importance (%IRI), the cephalopod Loliolopsis diomedeae with IRI = 18%, fish of the family Carangidae IRI = 25% and family Synodontidae IRI = 19% constituted the main prey in general. The trophic niche width was <0.4, which indicated that S. lewini juveniles in this area feed on a wide range of prey items, though they showed a preference for a few prey items.     

Comparative feeding ecology of shortfin mako, blue and thresher sharks in the California Current

This study describes the feeding ecology of three pelagic shark species in the California Current: shortfin mako (Isurus oxyrinchus); blue (Prionace glauca); and thresher (Alopias vulpinus) sharks. Stomach contents of sharks collected from 2002 to 2008 were identified to the lowest taxonomic level and analyzed using univariate and multivariate methods. Of 330 mako sharks sampled (53 to 248?cm fork length [FL]), 238 stomachs contained 42 prey taxa, with jumbo squid (Dosidicus gigas) and Pacific saury (Cololabis saira) representing the most important prey based on the geometric index of importance (GII). In addition, 158 blue sharks were sampled (76 to 248?cm FL) and 114 stomachs contained 38 prey taxa, with jumbo and Gonatus spp. squids representing the most important prey. Lastly, 225 thresher sharks were sampled (108 to 228?cm FL) and 157 stomachs contained 18 prey taxa with northern anchovy (Engraulis mordax) and Pacific sardine (Sardinops sagax) identified as the most important prey. Overall, mako sharks had the most diverse diet based upon Simpson??s diversity index (1/D) (8.43?±?1.16), feeding on many species of teleosts and cephalopods, followed by blue sharks (6.20?±?2.11) which consumed a wide range of prey (primarily cephalopods), while thresher sharks were most specialized (2.62?±?0.34), feeding primarily on coastal pelagic teleosts. Dietary overlap was lowest between blue and thresher sharks (S?rensen similarity index?=?0.321 and Simplified Morisita Horn index?=?0.006), and seasonal variability in diet was greatest for blue sharks (Simplified Morisita Horn index?=?0.260, Analysis of Similarity (ANOSIM) p?<?0.001). In addition, size class, and subregion were significant factors that affected diet of each species differently (ANOSIM p?<?0.001). Despite similarities in life history characteristics and spatial and temporal overlap in habitat, diets of these three common shark species are distinct in the California Current.     

Scale morphology and flexibility in the shortfin mako Isurus oxyrinchus and the blacktip shark Carcharhinus limbatus

We quantified placoid scale morphology and flexibility in the shortfin mako Isurus oxyrinchus and the blacktip shark Carcharhinus limbatus. The shortfin mako shark has shorter scales than the blacktip shark. The majority of the shortfin mako shark scales have three longitudinal riblets with narrow spacing and shallow grooves. In comparison, the blacktip shark scales have five to seven longitudinal riblets with wider spacing and deeper grooves. Manual manipulation of the scales at 16 regions on the body and fins revealed a range of scale flexibility, from regions of nonerectable scales such as on the leading edge of the fins to highly erectable scales along the flank of the shortfin mako shark body. The flank scales of the shortfin mako shark can be erected to a greater angle than the flank scales of the blacktip shark. The shortfin mako shark has a region of highly flexible scales on the lateral flank that can be erected to at least 50°. The scales of the two species are anchored in the stratum laxum of the dermis. The attachment fibers of the scales in both species appear to be almost exclusively collagen, with elastin fibers visible in the stratum laxum of both species. The most erectable scales of the shortfin mako shark have long crowns and relatively short bases that are wider than long. The combination of a long crown length to short base length facilitates pivoting of the scales. Erection of flank scales and resulting drag reduction is hypothesized to be passively driven by localized flow patterns over the skin. J. Morphol. 2012. © 2012 Wiley Periodicals, Inc.     

DNA barcoding of fresh seafood in Australian markets reveals misleading labelling and sale of endangered species

Flake and shark samples were purchased from outlets in several coastal Australian regions and genetically barcoded using the cytochrome oxidase subunit 1 (CO1) gene to investigate labelling reliability and species-specific sources of ambiguously labelled fillets. Of the 41 shark fillet samples obtained, 23 yielded high-quality CO1 sequences, out of which 57% (n = 13) were labelled ambiguously (misleading) and 35% (n = 8) incorrectly. In contrast, barramundi fillets, which are widely available and sought after in Australian markets, were shown to be accurately labelled. Species identified from shark samples, including the shortfin mako (n = 3) and the scalloped hammerhead (n = 1), are assessed by the IUCN as endangered and critically endangered, respectively, with several others classified as vulnerable and near threatened.     

Application of multiplex PCR approaches for shark molecular identification: feasibility and applications for fisheries management and conservation in the Eastern Tropical Pacific

Here we describe the application of new and existing multiplex PCR methodologies for shark species molecular identification. Four multiplex systems (group ID, thresher sharks, hammerhead sharks and miscellaneous shark) were employed with primers previously described and some designed in this study, which allow for species identification after running PCR products through an agarose gel. This system was implemented for samples (bodies and fins) collected from unidentified sharks landed in the port of Buenaventura and from confiscated tissues obtained from illegal fishing around the Malpelo Island Marine Protected Area, Pacific Coast of Colombia. This method has allowed reliable identification, to date, of 407 samples to the genus and/or species levels, most of them (380) identified as the pelagic thresher shark (Alopias pelagicus). Another seven samples were identified as scalloped hammerhead sharks (Sphyrna lewini). This is an easy-to-implement and reliable identification method that could even be used locally to monitor shark captures in the main fishing ports of developed and developing countries.