Genetic Variation and Population Differentiation in Natural Populations of Cryptomeria japonica

Abstract Sugi (Cryptomeria japonica D. Don) is a valuable tree species in Japan. The present natural distribution is limited to small scattered areas in temperate moist regions, and most of these areas are surrounded by vast artificial plantations. We studied natural populations of C. japonica in an effort to determine the amount and distribution of genetic diversity using 12 allozyme markers. The amount of genetic variation within the species is high (H_T=0.196) but most is found within populations with little among populations (G_ST=0.034) despite their isolated distribution. This pattern of genetic diversity is inferred to be the consequence of the following: (1) the distribution of this species in the past was wider and more continuous than it is now; (2) a high rate of gene flow occurs, perhaps including gene flow between natural populations and plantations; and (3) the long lifespan. However, the distribution of allele frequencies at the 6Pg-1 in northern populations on the side near the Sea of Japan is clearly different from those in other populations. This observation is inferred to result from founding events.     

Co-occurrence of the cirolanid isopodEurydice nipponica Bruce & Jones and the ghost shrimpCallianasa japonica Ortmann on an intertidal sand flat

On a moderately protected intertidal sand flat in west Kyushu, Japan, most of the population of the cirolanid isopodEurydice nipponica Bruce & Jones (89%–100%) was found in the zones occupied by the thalassinidean ghost shrimpCallianassa japonica Ortmann in July, August and December 1980.C. japonica later extensively expanded its habitat, and in July 1984, when almost the whole sand flat had been densely populated byC. japonica, the range of the distribution ofE. nipponica was the same as that ofC. japonica with a density about 10 times greater than in July 1980. The occurrence ofE. nipponica has previously been recorded from several exposed sandy beaches as well as their adjacent subtidal areas of well oxygenated sands along the coast of Kyushu, but not on more protected shores like the present sand flat. It is suggested thatC. japonica, through its bioturbating activities, produces sediment characteristics approximating those of the exposed sandy beaches which are the preferred habitat ofE. nipponica. It is supposed thatE. nipponica is a facultative commensal ofC. japonica. In a field experiment to excludeC. japonica and to detect its positive influence onE. nipponica, the densities ofE. nipponica were found to be lower in the experimental plots than in the intact plots. Statistically, however, the difference was only weakly significant, and the possible reasons for this are discussed.     

Predicted potential distribution of Sydowia japonica in Japan

Sydowia japonica, a dothidealean fungus, is a parasite that is specific to the male strobili of Japanese cedar. The fungus is a candidate for the control of Japanese cedar pollen dispersal, which is a cause of pollinosis. To evaluate S. japonica for bioherbicidal applications, it is necessary to characterise its potential distribution and environmental niche. Here, we predicted the distribution of S. japonica in Japan using field surveys and a maximum entropy model, and identified the environmental variables that influence its distribution. We identified S. japonica from a total of 87 localities in Japan through field surveys. Based on presence data and associated environmental variables, our model predicted that S. japonica is widely distributed in Japan, but concentrated in the Hokuriku and Kinki areas along the Sea of Japan. The model also predicted that the most important environmental variables influencing fungal distribution were sunshine duration in the winter and precipitation in the summer. This new information will contribute to the development of bioherbicidal applications for S. japonica.     

Distribution pattern and competition of insects breeding on Camellia japonica flower

The distribution pattern and competition of insects exploiting Camellia japonica flowers were studied in Tokyo, central Japan, to understand how their distributions are determined. Dasiops sp. of Lonchaeidae (Diptera) exploited flower buds and showed random distribution, whereas Drosophila unipectinata, D. oshimai and D. lutescens of Drosophilidae (Diptera) and Epuraea commutata of Nitidulidae (Coleoptera) exploited fully opened, late and fallen flowers and showed aggregated distribution. From the distribution pattern, it is assumed that Dasiops sp. has clutches of single egg whereas drosophilid and nitidulid species have clutches of more than one egg. In resource supplementary experiments, body size of drosophilid flies increased if resources were supplemented, although their survival is assumed to be unaffected. However, their body size did not decrease with increase of larval density in resource patches. It is therefore unclear whether resource competition occurs among drosophilid flies in Camellia flowers in nature. From the present and previous studies, it is assumed that aggregation (or production of clutches of more than one egg) is related to the use of fermenting or decayed resources; aggregation might increase larval survival and/or performance under the presence of molds or microorganisms.     

Taxonomy and geographical distribution of Dugesia japonica and D. ryukyuensis in the Far East

Dugesia japonica Ichikawa et Kawakatsu, 1964, is a common and polymorphic species of freshwater planarian distributed widely in the Far East. In 1976 the geographic populations were separated into 2 subspecies (D.j.japonica and D.j. ryukyuensis). The taxonomy of this species is reconsidered once again from the morphological, anatomical, histological, and karyological viewpoints. From the result of these studies, D.j. ryukyuensis is elevated to the rank of species: D. ryukyuensis Kawakatsu, 1976. D. japonica (n = 8, 2x = 16, 3x = 24) differs from D. ryukyuensis (n = 7, 2x = 14, 3x = 21) in having an asymmetrical penis papilla without a well-developed valve surrounding its basal part, and a well-developed vagina (distribution: the Japanese Islands, Taiwan, the Korean Peninsula, China, and Primorskiy, Northeast Siberia, in Russia). D. ryukyuensis is characterized by an asymmetrical penis papilla with a well-developed valve surrounding its basal part, and a less-developed vagina (distribution: the Southwest Islands of Japan).     

Growth and annual production of the brown alga Laminaria religiosa introduced into the Uwa Sea in southern Japan

Recently, aquaculture of Laminaria japonica has expanded to the southern coast of Japan and to China along the East China Sea. The southerly distribution of L. religiosa, compared to that of L. japonica, indicated that the aquaculture of L. religiosa along the southern coasts of Japan might be feasible. Thus, we examined the growth, biomass and productivity of L. religiosa cultivated in the Uwa Sea, in southwestern Japan over a period of two years. The seawater temperature ranged from 12.9 to 27.4°C in 2003/2004 and from 12.2 to 28.3°C in 2004/2005. In 2003/2004, the maximum mean density, maximum mean length, and maximum mean wet weight of L. religiosa was 7.8 ± 5.0 ind. m⁻¹ (mean ± SD), 14.8 ± 4.6 cm, and 1.2 ± 0.8 g wet wt., respectively. In 2004/2005, no germination was confirmed through the study period. The maximum biomass and annual production in 2003/2004 were estimated to be 6.9 ± 5.2 g wet wt. m⁻¹ and 8.9 g wet wt. m⁻¹ year⁻¹, respectively. The present study revealed that L. religiosa cultivated in the Uwa Sea were much smaller compared with those of Hokkaido Island, where the alga is naturally found. For the growth of L. religiosa, a relatively long period of seawater temperatures below 13.5°C is required. In the study area, seawater temperatures were below 13.5°C only 11 days in 2003, and 12 days in 2004. As a result, it is thought that expanding the cultivation of L. religiosa to southern areas including the Uwa Sea will be difficult.     

Spatial distribution of Eurya japonica in an old-growth evergreen broad-leaved forest,SW Japan

Abstract. The spatial distribution of Eurya japonica, an evergreen understorey species, was studied on a 4-ha permanent plot in an old-growth, temperate, evergreen broad-leaved forest in southwestern Japan. The pattern of spatial dispersion varied with size class, the environmental heterogeneity produced by tree-fall gaps and microtopography and the scale of observation. Seedlings (0.05 to < 0.5 m high) had the most clumped distributions, followed by saplings (0.5 to 1.3 m high) and adults (> 1.3 m). Individuals were more clumped at the smallest grid size, 1.56m × 1.56 m, and became less clumped as grid size increased for all size classes. On grids of less than 6.25 m × 6.25 m, no spatial correlations were found between seedlings and larger size classes; positive spatial correlations were found between saplings and adults at this scale. Abundant seedlings appeared in tree-fall gaps formed by uprooted trees, but seedlings were frequent on ridge tops and upper slopes. Saplings and adults also occurred on upper slopes, but their spatial distribution had little relation to current tree-fall gaps. The spatial distribution of E. japonica individuals was largely attributed to the distribution of tree-fall gaps and the differential responses to microtopographic variation by individuals at different size classes.     

Prevalence of Antibodies to Borrelia Spirochetes among Wild Small Rodents in Central and Western Japan

Field rodents serve as a reservoir for Lyme disease spirochetes. To evaluate the antibody responses of rodents against different Borrelia species in relation to fauna of vector ticks feeding on them, we examined 272 sera of wild rodents, Apodemus speciosus, A. argenteus, and Eothenomys smithii, obtained in 27 locations in central and western Japan from 1981 to 1994. As to prevalences by rodent species using immunoperoxidase test, A. speciosus, A. argenteus and E. smithii showed 29.4%, 11.6% and 30.8% reactivity to Borrelia japonica, 10.7%, 7.2% and 3.8% to B. afzelii, 0.6%, 1.4% and 0% to B. garinii, and 14.7%, 7.2% and 11.5% to an unknown Borrelia species designated as It type, respectively. Each antibody to B. japonica, B. afzelii and B. sp. It type was detected widely both in central and western Japan, but the antibody to B. garinii was scarcely detectable in any area and rodent species examined. Apodemus mice in high mountain altitudes tend to have antibody to B. afzelii or B. japonica, and those in lower altitudes tend to have B. japonica or B. sp. It type. All 13 Apodemus mice from which B. japonica or B. sp. It type were isolated showed higher titers of antibodies to each homologous Borrelia species. The present results indicate that these antibody prevalences among rodents may be associated with dominant Ixodes ovatus and sporadic I. persulcatus on the mainland of Japan, and that Apodemus mice may not be an efficient reservoir for B. garinii. Such a serosurvey is a useful measure to evaluate the natural distribution of the pathogen.     

Sika deer presence affects the host–parasite interface of a Japanese land leech

Since the 1990s, increasing populations of a blood feeding land leech (Haemadipsa japonica) have become a serious issue in several Japanese prefectures, and it may be caused by the increases in sika deer (Cervus nippon) populations seen over the last quarter of the century. Therefore, this study aimed to reveal the host animal species of H. japonica using iDNA (vertebrate DNA isolated from invertebrates) and to test the hypothesis that the increasingly widespread distribution of sika deer results in increased H. japonica populations through changes to the host–parasite interface. We amplified mitochondrial DNA 16S ribosome RNA fragments from iDNA isolated from the blood clots of H. japonica collected across Japan. We identified 17 host animal species, including four orders of Mammalia (Carnivora, Artiodactyla, Rodentia, and Lagomorpha) and two orders of Amphibia (Caudata and Anura). The sika deer was the dominant host species of H. japonica. Additionally, the host animal species composition of H. japonica differed according to the presence or absence of sika deer. In the sites where sika deer were not found, Anura (frog) species were the most commonly identified hosts of H. japonica. These results suggest that the increases in H. japonica populations might have occurred via a change in host preference to sika deer. This change might be driven by the increases in sika deer populations and subsequent increase in the frequency that H. japonica uses the sika deer as easy prey, as well as by sika deer providing more reproductive energy per blood meal than blood meal from frog species. The present study suggests that a more widespread distribution of sika deer resulted in an increase in H. japonica through a change in the host–parasite interface. Therefore, management that focuses on decreasing sika deer populations would likely be an effective method for the reduction of H. japonica populations.     

Cicada parasitic moths from China (Lepidoptera: Epipyropidae): morphology,identity, biology,and biogeography

Species of the family Epipyropidae are infrequently collected due to their ectoparasitic lifestyle and have therefore received little study. Based on our morphological and molecular analyses, all specimens found parasitizing different species of cicadas in China belong to one species, Epipomponia nawai (Dyar). The species Epipomponia oncotympana Yang (nom. invalid.) was found to be identical with E. nawai. The morphology of the egg, larva, pupa, and adult of E. nawai is described, including the ultrastructure of the egg and larva. Seven types of sensilla and their distribution pattern on the antennae of both females and males of E. nawai are examined using scanning electron microscopy, resulting in a better understanding of sexual dimorphism in this species. Population differentiation and phylogenetic relationships amongst populations of E. nawai occurring in China, the Korean Peninsula, and Japan are analysed. The intraspecific genetic distances suggest a low genetic differentiation which is also consistent with the minor morphological variations. The biogeographic analysis reveals that the Qinling Mountain Range, which is geographically the border of the subtropical and temperate zones, is presumably one of the most important geographic barriers to the gene flow of E. nawai. Our molecular phylogenetic analysis based on the COI gene of E. nawai indicates that frequent gene flow might have occurred in the China mainland, Taiwan and Japan islands, and possibly also the Ryukyu Islands after the Quaternary ice ages. In addition, the biology and behaviour of both larvae and adults of E. nawai were also observed, and results indicate the possibility of bisexual reproduction in this moth. Our results increase the understanding of the morphology, diversity, distribution, and biology of this unusual moth, and should aid future studies on patterns of population differentiation, biogeography, and reproductive behaviour in other epipyropids.     

Comparison of climatic effects on radial growth of evergreen broad-leaved trees at their northern distribution limit and co-dominating deciduous broad-leaved trees and evergreen conifers

Using dendrochronological techniques, this study examined whether tree-ring width of two evergreen broad-leaved species (Cleyera japonica, Eurya japonica) at their inland northern distribution limit in central Japan is more limited by low temperature compared with two co-dominating deciduous broad-leaved species (Fagus japonica, Magnolia hypoleuca) and two evergreen conifer species (Chamaecyparis obtusa, Abies firma), whose distribution limits are further north. The two deciduous broad-leaved species and the two evergreen conifers are tall tree species. Evergreen broad-leaved Cleyera japonica is a sub-canopy species and Eurya japonica is a small tree species. The tree-ring widths of four of the six species (except for Eurya japonica and Magnolia hypoleuca) correlated positively with the March temperature just before the start of the growth period. For deciduous broad-leaved Magnolia hypoleuca, the tree-ring width was correlated positively and negatively with July temperature and precipitation, respectively. However, the other deciduous broad-leaved Fagus japonica showed no such relationships. For the evergreen broad-leaved Cleyera japonica and evergreen conifers Chamaecyparis obtusa and Abies firma, tree-ring widths correlated positively with winter temperatures, probably because evergreen species can assimilate during warm winters. The tree-ring width of Cleyera japonica also correlated positively with temperatures of many months of the growth period. By contrast, the tree-ring width of the other evergreen broad-leaved Eurya japonica showed no positive correlation with the temperature in any month. Most Eurya japonica trees were suppressed by tall trees, which might disguise any climate effect. Thus, there were species differences in response to climate for each life form, and the tree-ring width of Cleyera japonica at the northern distribution limit was more limited by low temperatures compared with co-dominating species. It is suggested that growth of Cleyera japonica is increased by global warming at the latitudinal ecotone.     

Distribution and molecular characterization of distinct Asian populations of Bemisia tabaci (Hemiptera: Aleyrodidae) in Japan

Bemisia tabaci (Gennadius) is considered to be the most economically important pest insect worldwide. The invasive variant, the Q biotype of B. tabaci was first identified in 2004, and has caused significant crop yield losses in Japan. The distribution and molecular characterization of the different biotypes of B. tabaci in Japan have been little investigated. In this study, B. tabaci populations were sampled from the Japanese Archipelago, the Amami Archipelago and the Ryukyu Islands between 2004 and 2008, and the nucleotide sequences of their mitochondrial cytochrome oxidase I genes were determined. Bayesian phylogenetic relationship analysis provided the first molecular evidence that the indigenous Japanese populations could be separated into four distinct genetic groups. One major native population from the Japanese Archipelago, given the genetic group name Lonicera japonica, was separated into an independent group, distinct from the other genetic groups. The second major population, the Nauru biotype in the Asia II genetic group, was identified in the Amami Archipelago and the Ryukyu Islands. Two distinct minor genetic groups, the Asia I and the China, were also identified. One invasive B‐related population belonging to the Mediterranean/Asia Minor/Africa genetic group has been identified in Honshu. All lineages generated by the phylogenetic analyses were supported by high posterior probabilities. These distinct indigenous B. tabaci populations developed in Japan under geographical and/or biological isolation, prior to recent invasions of the B and Q biotypes.     

Geographic variation in oviposition preference for male and female host plants in a geometrid moth: implications for evolution of host choice

Several dioecious plant species exhibit sexual dimorphisms in defensive traits. However, the effects of sexual dimorphism on defense against herbivores remain poorly understood. Eurya japonica (Thunb.) (Theaceae) is a dioecious shrub that shows sexual dimorphism in the chemical defense of flower buds. Female calyces contain higher concentrations of total phenolics and condensed tannins than do male calyces. Male flower buds are edible for a florivore moth, Chloroclystis excisa (Butler) (Lepidoptera: Geometridae), whereas the female flower buds are lethal to the moth larvae. The moths prefer to oviposit on male over female E. japonica flower buds. As the moths also occur in areas lacking E. japonica, we tested whether the oviposition preference for E. japonica flower sex differed between moths sympatric and allopatric with E. japonica. The moths sympatric with E. japonica showed a stronger preference for male E. japonica than the moths allopatric with E. japonica. Our phylogeographic study using mitochondrial cytochrome oxidase subunit I gene sequences revealed little genetic differentiation between moth populations sympatric and allopatric with E. japonica. These results suggest that the adaptive oviposition preference for flower sex of E. japonica has evolved rapidly in C. excisa.     

Habitat niche specialization in an understory species in a warm temperate forest

Relationships between microhabitat variables; understory light conditions in summer and winter, altitude, slope inclination and topographic categories (valley, ridge, and slope) and the distribution of Aucuba japonica Thunb. (Cornaceae), a common understory shrub species in Japan were examined using non-contagious 66, 20 × 20 m² quadrats. The Morishita’s I _δ suggested that A. japonica distributions were strongly heterogeneous among the quadrats. Therefore positive spatial autocorrelation of A. japonica at a within-quadrat level (≤20 m) was obvious. Moran’s I statistics showed a significant positive spatial autocorrelation in A. japonica abundance within the distance shorter than 60 m. But the partial Mantel tests suggested that the mass effect from neighboring quadrats would little explain A. japonica abundance in a quadrat. The partial Mantel tests also clearly showed that A. japonica distributions were strongly structured by topography and understory light conditions. Using Monte Carlo randomization tests, we found that A. japonica was aggregately distributed in quadrats in valley which were covered by deciduous canopies. Better understory light conditions in winter together with valley edaphic conditions may increase the abundance of A. japonica there. It is concluded that habitat niche specialization is important in structuring distribution of A. japonica in this forest community.     

中国禾本科植物一新记录种——日本小丽草

报道中国禾本科(Gramineae)小丽草属一新记录种——日本小丽草(Coelachne japonica Hack.),该种原记载特产于日本本州和九州,现在浙江省苍南县莒溪和泰顺县黄桥发现有该种分布。同时,还描述了该种形态特征与生境,提供活植物照片和凭证标本,重新修订浙江有分布的小丽草属植物。     

山豆根叶片光合特性对光强和干旱的响应

山豆根(Euchresta japonica)为我国II级重点保护野生植物。该研究通过设置不同遮阴网的层数和采用不同浓度的聚乙二醇溶液浇灌,探讨了山豆根光合特性对光强和干旱的响应。结果表明, 山豆根叶片的饱和光强为683.06~907.07mmol/(m²·s); 单层遮阴处理叶片的最大电子传递速率和最大净光合速率整体高于双层遮阴处理,其中单层遮阴且未进行干旱处理的叶片最大电子传递速率和最大净光合速率最高,分别为55.36和6.73mmol/(m²·s);相同遮阴条件下,叶片的最大净光合速率及其对应的饱和光强均随干旱程度增加整体呈下降趋势;单层遮阴条件下的蒸腾速率和水分利用效率均整体高于双层遮阴条件下的。不同处理下叶片光系统II的实际光化学效率、光化学猝灭系数以及非光化学猝灭系数等整体上均无显著差异(P>0.05)。山豆根属半阳生植物,其叶片利用弱光能力较强,植株具有较强的耐干旱能力。因此,建议在开展野外回归、迁地保护、人工栽培等工作时,进行适当遮阴处理并保持充足的土壤含水量。     

Comparison of ecophysiological responses to heavy snow in two varieties ofAucuba japonica with different areas of distribution

Aucuba japonica varieties are common evergreen understory shrubs in Japan.Aucuba japonica var.borealis is distributed on the Sea of Japan side of Honshu and Hokkaido where heavy snow cover lasts for more than 3 months in winter.Aucuba japonica var.japonica is distributed in areas with shallow or no snow on the Pacific Ocean side of Honshu and Shikoku. The ecophysiological characteristics of var.borealis were compared with those of var.japonica to examine the effects of heavy and long-term snow cover on the life cycle of var.borealis. Shoots of both varieties were shaded in crushed ice for 110 days, but their photosynthetic activities, chlorophyll contents and the chlorophylla/b ratio was not affected. The leaves of var.borealis were no less frost tolerant than those of var.japonica. In spite of the difference in environmental factors, both varieties had similar characteristics in seasonal changes of photosynthesis, respiration and chlorophylla/b ratio. These results suggest that var.japonica could survive in areas with heavy snow where it does not normally occur. Leaf net production (LNP) was estimated based on the microclimatic data and seasonal photosynthetic and respiration rates. The difference in the annual LNP between the two varieties was equivalent to the difference in the LNP during the snow season. One of the major effects of snow cover is to interrupt and reduce the production period of var.borealis.     

Taxonomic studies of nectrioid fungi in Japan. III. The genus <Emphasis Type="Italic">Cosmospora</Emphasis>

Seven species of the genus Cosmospora collected in Japan are reported in this article. Among them, Cosmospora japonica is described as a new species. Cosmospora henanensis, C. rishbethii, and C. triqua, all of which are known only from their type localities, are added to the Japanese mycobiota. The other species, C. chaetopsinaecatenulatae, C. diminuta, and C. peponum, are new records for Japan. Additional distribution records are given for Cosmospora species hitherto known in Japan.     

Comparison of the life cycles of two mayfly species between upper and lower parts of the same stream

The life cycles of the burrowing mayflies, Ephemera strigata Eaton and E. japonica McLach‐lan were studied comparatively between upper part and lower part of a small tributary of the Yoshino River. E. strigata was more common than E. japonica in the studies areas. E. japonica was found only in the upper part and in tiny tributaries of the stream. E. strigata was univoltine in the lower and in the upper parts of the stream. However, the population falls into two groups, one of which emerges in early May and the other in summer. Water temperature seems to be one of the factors affecting the variable life cycle of E. strigata. E. japonica is univoltine. Emergence of this species was observed from June to August.