First and second millennium a.d. agriculture in Rwanda: archaeobotanical finds and radiocarbon dates from seven sites

This article presents the results from a programme of bulk soil sampling and flotation of first and second millennium a.d. early farming, ‘Iron Age’, archaeological sites in Rwanda conducted in 2006–2007 alongside a new set of associated radiocarbon dates, which contribute toward the development of a chronology of plant use for the region. This research has identified the earliest examples of pearl millet (Pennisetum glaucum), finger millet (Eleusine coracana) and sorghum (Sorghum bicolor) in Great Lakes Africa and thus this article also discusses the significance of these finds within the later archaeology of the region and presents a brief synthesis of the direct archaeological evidence for finger millet in sub-Saharan Africa.     

ARCHAEOBOTANICAL STUDIES OF ELEUSINE CORACANA SSP. CORACANA (FINGER MILLET)

Two controversial archaeological specimens of finger millet, Eleusine coracana ssp. coracana (L.) Gaertn., were examined by light and scanning electron microscopy. Identification of the material was based on morphological and anatomical comparison with laboratory carbonized grains of modern Eleusine. Seed morphology of the Indian archaeological collection did not conform with those of domesticated or wild species of Eleusine. The other archaeological collection examined is from Ethiopia. It is estimated to date back to the third millennium B.C. These well preserved inflorescence fragments were positively identified as finger millet. If the suggested date is correct, they represent the oldest archaeological record for the crop, as well as the oldest agricultural record for Africa south of the Sahara. These findings support biosystematic evidence for an East African origin of finger millet which leaves India as a secondary center of diversity.     

Farmers’ Management of Finger Millet (Eleusine coracana L.) diversity in Tigray, Ethiopia and Implications for on-Farm Conservation

Tigray (region) is one of the major finger millet growing regions in Ethiopia and an important site from an archeobotanical point of view. Three zones of Tigray (east, central and west) were identified as representative sites in the region and a total of 14 districts/ ‘Woreda’ were surveyed. Thirty-seven landraces/farmers’ varieties of finger millet were identified/recorded. Farmers in Tigray undertake pre and post harvest selection in finger millet and sometimes they also select seeds from storage based on a number of attributes. Farmers maintain diversity as a way to ensure harvest security or stability of production, to promote diversity of diet and income sources, minimize crop failure risk, reduce insect and disease incidences and ensure efficient use of labour. The traditional management of finger millet in the entire study area is generally found to be demand driven, showing the existence of potential sites for on-farm conservation. The high morphological diversity (H =0.76 ± 0.09) found in the gene bank collections of Tigrayan origin also reveals the importance of linking ex situ with in situ conservation activities. Furthermore, the enhancement and conservation significance of the crop is discussed.     

SYSTEMATICS AND EVOLUTION OF ELEUSINE CORACANA (GRAMINEAE)

Finger millet (Eleusine coracana (L.) Gaertn. subsp. coracana) is cultivated in eastern and southern Africa and in southern Asia. The closest wild relative of finger millet is E. coracana subsp. africana (Kennedy-O'Byrne) Hilu & de Wet. Wild finger millet (subsp. africana) is native to Africa but was introduced as a weed to the warmer parts of Asia and America. Derivatives of hybrids between subsp. coracana and subsp. africana are companion weeds of the crop in Africa. Cultivated finger millets are divided into five races on the basis of inflorescence morphology. Race coracana is widely distributed across the range of finger millet cultivation. It is present in the archaeological record of early African agriculture that may date back 5,000 years. Racial evolution took place in Africa. Races vulgaris, elongata, plana, and compacta evolved from race coracana, and were introduced into India some 3,000 years ago. Little independent racial evolution took place in India.     

Agrobacterium-mediated transformation of finger millet (Eleusine coracana (L.) Gaertn.) using shoot apex explants

A new Agrobacterium-mediated transformation system was developed for finger millet using shoot apex explants. The Agrobacterium strain LBA4404 harboring binary vector pCAMBIA1301, which contained hygromycin phosphotransferase (hptII) as selectable marker gene and β-glucuronidase (GUS) as reporter gene, was used for optimization of transformation conditions. Two finger millet genotypes, GPU 45 and CO 14, were used in this study. The optimal conditions for the Agrobacterium-mediated transformation of finger millet were found to be the co-cultivation of explants obtained on the 16th day after callus induction (DACI), exposure of explants for 30 min to agrobacterial inoculum and 3 days of co-cultivation on filter paper placed on medium supplemented with 100 μM acetosyringone (AS). Addition of 100 μM l-cysteine in the selection medium enhanced the frequency of transformation and transgenic plant recovery. Both finger millet genotypes were transformed by Agrobacterium. A frequency of 19% transient expression with 3.8% stable transformation was achieved in genotype GPU 45 using optimal conditions. Five stably transformed plants were fully characterized by Southern blot analysis. A segregation analysis was also performed in four R₁ progenies, which showed normal Mendelian pattern of transgene segregation. The inheritance of transgenes in R₁ progenies was also confirmed by Southern blot analysis. This is the first report on Agrobacterium-mediated transformation of finger millet. This study underpins the introduction of numerous agronomically important genes into the genome of finger millet in the future.     

Fermentation of a composite finger millet-dairy beverage

Fermented composite beverages of finger millet and milk are popular, nutritious, traditional foods in many parts of Zimbabwe. With the aim of commercial production, we determined what type of microbial cultures can be used to ferment a composite finger millet and skimmed milk powder gruel and the optimum conditions for its production. Composites containing between 0 and 100% finger millet gruel by volume were inoculated and incubated at various temperatures. The desired pH of 4.5 or less was obtained with incubation at 30 to 45 °C (but not at lower temperatures) with lower pH values being obtained as the temperature increased. YC380 (a yoghurt type bacterial starter culture) produced a pH of 4.5 or less only when skim milk was also present; V2 (another yoghurt type bacterial starter culture) did so at all levels of finger millet gruel and JC (a mixed strain culture developed to ferment cereals) only when finger millet gruel was present. A clear relationship between incubation temperature and syneresis could not be established but syneresis decreased significantly (p < 0.05) with increasing proportions of finger millet gruel. A thick product with a set consistency was obtained with YC380 at an incubation temperature of 45 °C and a storage temperature of 7 °C regardless of proportion of finger millet gruel. V2 produced a thick product with a set consistency at an incubation temperature of 45 °C, and storage temperature of 7 °C and when the proportions of finger millet gruel were between 0 and 50%. It appears that yoghurt type bacterial cultures can be successfully used to produce a composite fermented beverage from finger millet and skim milk, but cultures developed for fermentation of cereals are not suitable.     

新石器时代关中地区人类生业模式演变的生物考古学证据

农业的起源与发展,改变了人类食物资源的获取方式。作为史前文化发展的中心,关中地区史前人类生业模式演变规律与影响因素的探索,将为北方地区农业的起源、发展与传播,文化交流对农业发展的影响,人类对环境变迁的适应等热点问题研究提供重要依据。本文对关中地区史前不同文化、不同遗址人与动物骨骼的稳定同位素以及动植物遗存进行了综合分析。结果显示,受文化的发展与交流、区域地理环境的差异、气候的演变等因素影响,关中地区史前先民生业模式呈现时空差异。老官台文化先民的生业模式中旱作农业与狩猎采集并重。仰韶文化早期,旱作农业成为先民生业模式的主体,但不同区域发展水平不同;另外,家畜饲养的发展速度要滞后于农作物。仰韶文化中、晚期至龙山文化早期,水稻与小麦先后传入,形成以粟、黍旱作农业为主,兼营水稻、大豆等的多元化农业结构;水稻对仰韶文化中期先民的食谱产生影响,而同时期家畜饲养主要依赖于粟黍类农作物。龙山文化,黍、粟农业比重下降,水稻含量相对增加,并对先民与家畜的食谱产生影响;肉食获取方式以饲养活动为主,渔猎活动为辅。     

Experimental approaches to understanding variation in grain size in Panicum miliaceum (broomcorn millet) and its relevance for interpreting archaeobotanical assemblages

The dimensions of archaeobotanical grains identified as Panicum miliaceum (broomcorn millet) vary greatly in size. This is illustrated by the remains from the archaeological site of Zanovskoe in eastern Ukraine (5th–1st centuries cal. b.c.). We carried out experimental work on broomcorn millet plants and grains, aiming at a comprehensive understanding of factors that may have contributed to variation in the grain size of broomcorn millet in archaeobotanical assemblages. We analyzed the dependence of grain size variation on selected environmental and taphonomic factors. Our results indicate that immaturity is more likely than environmental stress to account for small grain size in broomcorn millet plants. Depending on charring temperature and time, immature broomcorn millet grains can withstand charring and are potentially preserved in archaeological assemblages. Depending on maturity level, such grains vary in size and shape. These results are potentially important for accurate identification of archaeobotanical specimens.     

Comparative analyses reveal high levels of conserved colinearity between the finger millet and rice genomes

Finger millet is an allotetraploid (2n = 4x = 36) grass that belongs to the Chloridoideae subfamily. A comparative analysis has been carried out to determine the relationship of the finger millet genome with that of rice. Six of the nine finger millet homoeologous groups corresponded to a single rice chromosome each. Each of the remaining three finger millet groups were orthologous to two rice chromosomes, and in all the three cases one rice chromosome was inserted into the centromeric region of a second rice chromosome to give the finger millet chromosomal configuration. All observed rearrangements were, among the grasses, unique to finger millet and, possibly, the Chloridoideae subfamily. Gene orders between rice and finger millet were highly conserved, with rearrangements being limited largely to single marker transpositions and small putative inversions encompassing at most three markers. Only some 10% of markers mapped to non-syntenic positions in rice and finger millet and the majority of these were located in the distal 14% of chromosome arms, supporting a possible correlation between recombination and sequence evolution as has previously been observed in wheat. A comparison of the organization of finger millet, Panicoideae and Pooideae genomes relative to rice allowed us to infer putative ancestral chromosome configurations in the grasses. Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Ancient plant DNA in archaeobotany

Plant diaspores, tissues and wood are preserved in natural and anthropogenic sediments. Also, over the past centuries, plants have been collected in herbaria. These plant remains carry macroscopic and molecular information, making them a rich source for reconstructing past plant use, agriculture, diet or vegetation—they are thus proxies for past economies, ecology, migrations or trade. This article focuses on the application of ancient DNA analyses from plants excavated at Holocene archaeological sites. A short methodological section is added to illustrate possibilities and limitations of ancient DNA research in plants.     

Plant tempering of Predynastic pisé at Adaïma in Upper Egypt: building material and taphonomy

Macroscopic plant remains found in pisé material (clay or mud used in building), used as lining in pits at the Upper Egyptian Predynastic site of Adaïma were investigated. Comparison with assemblages from the sediment fills of these pits and with assemblages from other contexts in the same site demonstrated the taphonomical importance of pisé as a building material for the formation of the sites archaeological sediment. In particular, the influence of the pisé plant temper on the composition of plant assemblages in the sediment fills of the pits was brought to the fore. The choice of specific plant materials for their use as temper in pisé or mud bricks is shown, in particular that of barley (Hordeum vulgare) threshing remains. The importance of cereal processing by-products as construction material is also assessed in a wider economic context and compared with later Egyptian mud brick plant contents.     

Mass Inhumation and the Execution of Witches in the American Southwest

Recent analyses of prehistoric multiple inhumations in Anasazi sites in the American Southwest have argued that cannibalism best explains evidence of defleshing, cutting, and bone breakage. The validity of this explanation is questioned in a review of ethnohistoric and ethnographic literature on Pueblo witchcraft and witch execution. A model based on Puebloan procedures for witch destruction is offered which accounts for osteological patterning in the archaeological record as well as contextual and artifactual evidence not considered previously.     

Pre- and perinatal brain development and enculturation

Ample evidence from various quarters indicates that the perceptual-cognitive competence of the pre- and perinatal human being is significantly greater than was once thought. Some of the evidence of this emerging picture of early competence is reviewed, and its importance both as evidence of the biogenetic structural concept of “neurognosis” and for a theory of enculturation is discussed. The literature of pre- and perinatal psychology, especially that of developmental neuropsychology, psychobiology, and social psychophysiology, is incorporated, and some of the implications of these data for a theory of enculturation are suggested. This paper was presented at the annual meeting of the American Anthropological Association, Washington, D.C., November 1989. Charles D. Laughlin, Professor of Anthropology at Carleton University, Ottawa, Canada, has done ethnographic fieldwork among the So of northeastern Uganda and among Tibetan lamas in Nepal and India. He completed postdoctoral studies in neurophysiology at the Institute of Neurological Sciences, University of Pennsylvania. He is editor of both theNeuroanthropology Network Newsletter and thePre- and Peri-Natal Psychology Journal.     

Simple sequence repeat (SSR) analysis in relation to calcium transport and signaling genes reveals transferability among grasses and a conserved behavior within finger millet genotypes

Being an excellent source of calcium, finger millet crop has nutraceutical importance. Mineral accumulation, being a polygenic trait, becomes essential to target potential candidate genes directly or indirectly involved in the regulation of calcium transport and signaling in cereals and might have influence on grain calcium accumulation. In view of this, genic microsatellite markers were developed from the coding and non-coding sequences of calcium signaling and transport genes viz. calcium transporters (channels; ATPases and antiporters), calcium-binding proteins and calcium-regulated protein kinases available in rice and sorghum. In total, 146 genic "simple sequence repeat" (SSR) primers were designed and evaluated for cross-transferability across a panel of nine grass species including finger millet. The average transferability of genic SSR markers from sorghum to other grasses was highest (73.2 %) followed by rice (63.4 %) with an overall average of 68.3 % which establishes the importance of these major crops as a useful resource of genomic information for minor crops. The transfer rate of SSR markers was also correlated with the phylogenetic relationship (or genetic relatedness) of the species. Primers with successful amplification in finger millet were further used to screen for polymorphism across a set of high and low calcium containing genotypes. The results reveal a conserved behavior across the finger millet genotypes indicating that the mineral transport and the storage machinery largely remain conserved in plants and even SSR variations in them remain suppressed during the course of evolution. Single nucleotide polymorphism and differential expression patterns of candidate genes, therefore, might be a plausible reason to explain variations in grain calcium contents among finger millet genotypes.     

Plant Remains From Waterlogged Sites In The Arawe Islands, West New Britain Province, Papua New Guinea: Implications For The History Of Plant Use And Domestication

Plant remains in the Arawe Islands were found preserved in waterlogged beach sediments. Remnants of edible fruit and wild nuts were found together with Lapita pottery, stone artifacts, and other evidence of human settlement. Previous discoveries of fruit and nut remains in Lapita pottery sites have been interpreted as evidence for an arboricultural complex based on a variety of tree species. Here we report direct evidence for plant use, but are unable to recognise any particular system of plant cultivation or harvest. All the genera and species recognised in the Arawe plant remains are known to enter modern beach drift by natural processes, from wild and cultivated sources. The archaeological assemblages pose intriguing problems for interpreting the history of plant use and domestication.     

The interplay of ethnographic and archaeological knowledge in the study of past human subsistence in the tropics

Much of what is currently known or believed about how humans procured and produced food in the past stems from ethnographic and historical evidence of the subsistence practices of foragers and farmers. It is often difficult or impossible to relate archaeological evidence directly to the ethnohistorical record, although these two very different sources of data potentially complement each other. The potential of such complementarity is now being enhanced by the use of novel techniques, such as parenchyma, phytolith, and starch-grain analysis, for identifying fragmentary and amorphous organic remains retrieved from archaeological deposits, and by the use of the AMS (accelerator mass spectrometric) radiocarbon method to date very small samples, such as single seeds. More conventional ethnoarchaeological methods, by which field evidence of subsistence-related structures is compared with information derived from ethnographic and historical accounts, also continue to yield valuable insights into past food procurement and production. In this essay, the reciprocal relationship between archaeobotanical and ethnohistorical data is exemplified by examining (a) recent applications of novel analytical techniques in investigations of the antiquity of root and tuber cultivation in the American, African, and Southeast Asian tropics, and (b) the use of more conventional methods in the study of past forager subsistence in tropical northeastern Australia.     

Deconstructing the concept of Subneolithic farming in the southeastern Baltic

The paper presents a critical review of the zooarchaeological, macrobotanical, palynological and archaeological data from Lithuania and their previous interpretations, which formerly served as the basis for the concept of development of pre-Neolithic or Subneolithic low intensity farming and/or livestock breeding in the eastern Baltic region. Moreover, it presents the first direct AMS dates from the crop remains and domestic animal bones discovered in Lithuanian Subneolithic and Neolithic settlements. An investigation proved that most of, or possibly all, the early farming “evidence” came from the wrong identification of the plant and animal species and incorrect dating of crop remains and domestic animal bones. The errors of dating were caused by the fresh water reservoir effect being ignored when dating the bulk lacustrine sediment samples, by the failure to evaluate the impact of the palimpsest and bioturbation phenomena on the formation of an archaeological layer, and by insufficient attention to stratigraphy and spatial documentation of the finds during very extensive archaeological excavations in the second half of the 20th century. To date, no credible evidence is available in Lithuania that domestic animals had been kept and crops grown before the Neolithic Globular Amphora and Corded Ware cultures in 3200/2700 cal bc. However, this does not mean such evidence may not appear in the future, provided direct AMS dating of animal and crop residues from Subneolithic contexts continues, and systematic macrobotanical studies finally start not only in the lake settlement and fishing sites, but also in higher altitude areas.     

Vegetation dynamics in western Uganda during the last 1000 years: climate change or human induced environmental degradation?

A multi-proxy analysis of microfossils from sedimentary records, together with evidence from historical and archaeological data, has provided evidence of vegetation dynamics and human environment interactions in western Uganda for the last 1000 years. Pollen, fungal spores and phytoliths extracted from sediment cores obtained from a papyrus swamp at Munsa archaeological site indicate a relatively wet and forested environment in western Uganda prior to ca 1000 yr bp (cal 977–1159 ad ). A subsequent decline in forest vegetation occurred from ca 920 yr bp (cal 1027–1207 ad ). However, the deforestation period occurred during a wet period as registered in the River Nile water records, suggesting a human induced deforestation at Munsa rather than reduced precipitation. Increased numbers of herbivores, presumably domesticated cattle, postdeforestation are evidenced by the presence of dung fungal spores and broad accord with the archaeological evidence for initial occupation of the site at Munsa and the establishment of a mixed economy based on crops, cattle and iron working between 1000 and 1200 ad . From ca 200 yr bp (cal 1647–1952 ad ), forest recovery occurred at Munsa site and appears to reflect abandonment of the site, as suggested by archaeological evidence, possibly following a period of prolonged drought and famine between 1600 and 1800 ad , as recounted in the oral rich traditions of western Uganda and also reflected by low water levels of River Nile.     

Population Structure and Diversity in Finger Millet (Eleusine coracana) Germplasm

A genotypic analysis of 79 finger millet accessions (E. coracana subsp. coracana) from 11 African and five Asian countries, plus 14 wild E. coracana subsp. africana lines collected in Uganda and Kenya was conducted with 45 SSR markers distributed across the finger millet genome. Phylogenetic and population structure analyses showed that the E. coracana germplasm formed three largely distinct subpopulations, representing subsp. africana, subsp. coracana originating from Africa and subsp. coracana originating from Asia. A few lines showed admixture between the African and Asian cultivated germplasm pools and were the result of either targeted or accidental intercrossing. Evidence of gene flow was also seen between the African wild and cultivated subpopulations, indicating that hybridizations among subspecies occur naturally where both species are sympatric. The genotyping, combined with phylogenetic and population structure analyses proved to be very powerful in predicting the origin of breeding materials. The genotypic study was complemented by a phenotypic evaluation. The wild and cultivated accessions differed by a range of domestication-related characters, such as tiller number, plant height, peduncle length, seed color and grain yield. Significant differences in plant architecture and yield were also identified between the Asian and African subpopulations. The observed population structure within cultivated finger millet is consistent with the theory that, after the introduction of finger millet from Africa into India via the trade routes some 3000 years ago, the two germplasm pools remained largely isolated until recent times. The significantly lower diversity present within the Asian subpopulation also suggests that it arose from a relatively small number of founder plants.     

A unique course in anthropology

The course in forensic anthropology presented at Florida State University is designed to train criminal investigators in the application of physical anthropological and archaeological techniques to the investigation of buried bodies. Modification of archaeological field techniques by experimentation using artificial graves allows the recovery of fragile and easy to overlook evidence and ensures the recovery of all possible material for analysis by the physical anthropologist. An introduction to physical anthropology enables the criminal investigator to effectively communicate his needs and understand the type of information required for adequate identification of remains by a physical anthropologist.