Using interpubic distance for sexing manakins in the field

ABSTRACT Field methods for determining the sex of birds are often limited due to morphometric overlap between sexes, intermediate plumages, seasonality, and reliance on subjective age classification. Interpubic distance, characterized in birds as the distance between the distal ends of the pubic bones, has not been formally tested as a method for determining the sex of birds, despite references among parrot breeders and the frequent use of analogous measurements in mammals. We developed a harmless and easily performed field method for measuring interpubic distance in studies involving bird capture, and compared the interpubic distances of known sex White‐ruffed Manakins (Corapipo altera), Orange‐collared Manakins (Manacus aurantiacus), and Blue‐crowned Manakins (Lepidothrix coronata) to evaluate the possible use of this measurement to determine sex. Using interpubic distance ranges based on 85% confidence intervals where overlap existed between sexes, the sex of 92.8–100% of all manakins in our study was accurately determined with no misclassification. Interpubic distance performed better than plumage‐based methods that sexed 74.0% of all individuals and misclassified 1.5%. Using linear discriminant analysis, we developed classification equations that allowed us to accurately determine the sex of all individuals with 100% accuracy using mass and interpubic distance. Additionally, we compared the interpubic distances of female White‐ruffed Manakins to evaluate the potential to determine age and reproductive status. Despite an apparent relationship between interpubic distance, age and reproductive status, we concluded that interpubic distance has limited use for determining age and reproductive status due to extensive overlap (31.6–100%), but shows potential in other applications. Based on these results, we endorse the use of interpubic distance to determine the sex of manakins. We encourage further study to develop additional classification equations using different morphometric measurements and to test the efficacy of interpubic distance to determine sex in other bird species.     

Sex assessment using the proximal tibia

The proximal end of the human tibia is sexually dimorphic. Tibial condyles from 100 individuals in the Hamann-Todd Collection were measured. Regression equations retrodicted known sex with 86-95% accuracy. A test sample of 20 individuals also from the Hamann-Todd Collection was classified with 85-100% accuracy. A sample of 20 prehistoric individuals provisionally sexed by using crania and innominate bones was classified with 85-100% agreement. Thus, the proximal tibia may be useful in determining the sex of a skeleton.     

Age and Sex Determination in the Water Vole (<Emphasis Type="Italic">Arvicola amphibius</Emphasis>, Rodentia,Arvicolinae) Based on Measurements of the Pelvic Limb Bones

A method was developed for determining the age and sex of the water vole (Arvicola amphibius L.) based on the measurements of the pelvic limb bones. The material was obtained from captive-bred animals of a known age. By using discriminant analysis, classification functions were found for dividing the animals of the sample analyzed (n = 56) by sex and age with an accuracy equal to one year. Testing the control group (n = 34) showed that the age of 90.0% of males and of 92.9% of females was determined correctly. The correctness of the classification by sex is 100%.     

Molecular markers for sex determination in papaya (<Emphasis Type="Italic">Carica papaya</Emphasis> L.)

We have developed molecular markers tightly linked to Sex1, the gene that determines plant sex in papaya ( Carica papaya L.). Three RAPD products have been cloned and a portion of their DNA sequenced. Based on these sequences SCAR primers were synthesized. SCAR T12 and SCAR W11 produce products in hermaphrodite and male plants and only rarely in females. SCAR T1 produces a product in all papayas regardless of plant sex. SCAR T12 and SCAR W11 showed no recombination in a population of 182 F2 plants from a 'SunUp' by 'Kapoho' cross. Based on these results a PCR-based technique for rapidly and accurately determining the sex of papaya plants was developed using either W11 or T12 to detect the hermaphrodite or male allele and T1, which amplifies a product regardless of sex type, as a positive control. The sexing technique, using SCAR T12 and SCAR T1 as a positive control, was used to correctly predict hermaphrodite papaya plants in a population of seedlings with an overall accuracy of 99.2%.     

应用Fourier变换对东北地区成人颅骨性别差异的研究

本研究所用材料为已知性别、已知年龄的东北地区汉族成人干燥颅骨。应用Fourier变换,将额骨矢状弧的形态转变成Fourier极数,然后应用多元逐步判别分析求得性别判别函数,判别符合率达到90.10％。对31例已知性别汉族成人颅骨盲测,正确率达到84.21% (男性) 和83.33％ (女性) 。研究表明,颅骨的大小和年龄对本方法的判别结果无显著影响。     

Sex chromosomes and sex determination pathway dynamics in plant and animal models

In this review, we discuss and compare data obtained from animal and plant models, focusing our attention on the mechanisms that affect sex linkage and changes in sex‐determining pathways. Patterns in data across taxa suggest that sex bias and the dynamics that occurs within hybrid zones can play an important role in these processes that enable the spread of some otherwise handicapped genotypes. We discuss the data obtained from several main plant model species in the light of the patterns demonstrated in animal models. In several plant models, we discuss possible differences in the age of their sex‐determining pathways and the age of their current sex chromosomes. We also address an open question: how can an X/A ratio based sex‐determining system evolve from a sex‐determining system based on two genes on the Y chromosome that control two separate sex‐determining pathways (for the control of gynoecium suppression and anther promotion)? Taking inspiration from the well described mechanisms involved in sex determination dynamics in animals, we suggest a hypothetical stepwise scenario of change of the plant sex‐determining system based on two separate sex‐determining pathways (for the control of gynoecium suppression and anther promotion) into the other sex‐determining systems. We suppose that an intermediate step occurs before shift to X/A based sex determination. At that phase, sex determination in plants is still based on an active Y chromosome, although there exists already a connected control of both sex‐determining pathways. We suggest that this connection is enabled by the existence of the genes that control sexual dimorphism in the vegetative state of plant development, and that, in some circumstances, these genes can become sex‐determining genes. © 2010 The Linnean Society of London, Biological Journal of the Linnean Society, 2010, 100 , 737–752.     

Sex determination of adolescent skeletons using the distal humerus

Accurate determination of the sex of immature skeletal remains is difficult in the absence of DNA, due to the fact that most sexually dimorphic features of the human skeleton develop as secondary sex characteristics during adolescence. Methods of assessment of adult skeletons cannot reliably be applied to adolescent skeletons because of the transitional nature of the skeleton at puberty and the variability of the adolescent growth spurt. The purpose of this work was to evaluate the accuracy of Rogers's method of morphological sex determination using the distal humerus (Rogers: J Forensic Sci 44 ( 1999 ) 55–59) to assess the sex of adolescent skeletons. The sample consists of 7 documented adolescent skeletons from the Christ Church Spitalfields collection at the British Museum of Natural History and 35 from the Luis Lopes skeletal collection housed in the National History Museum (Museu Bocage) of the University of Lisbon, Portugal. Ages range from 11 to 20 years. The technique achieved an accuracy of 81% on the combined sample of 42. This method can be applied to adolescent skeletons once the trochlea begins fusing to the humeral diaphysis, which occurred by age 11 years in the test samples. Am J Phys Anthropol 2009. © 2009 Wiley‐Liss, Inc.     

Cattle fetal sex determination by polymerase chain reaction using DNA isolated from maternal plasma

The objective of this study was to evaluate the use of polymerase chain reaction analysis (PCR) of fetal cells/DNA in the maternal plasma of pregnant cows to determine the sex of the fetus. Plasma was harvested from 35 cows of mixed genotype at different stages of pregnancy ranging from 5 to 35 weeks. A male calf and a heifer calf provided the control samples. Fetal sex was determined by amplification of Y-specific sequences. For the 35 cows, the fetal sex predicted by this technique was in accordance with the sex of the calf at birth in 88.6% of cases. The agreement between predicted and observed fetal sex was less for cows with a gestational length of 35-48 days (63.6%). Regression analysis showed that there was a strong relationship between the probability of correctly predicting fetal sex and the stage of gestation. It was estimated that the test performed at 43.8 days post fertilization would have 95% accuracy, increasing to 99% accuracy for testing at 48.4 days and 99.9% accuracy for tests at 55.0 days or later. It was concluded that PCR analysis of fetal cells in maternal plasma can be used to predict successfully the sex of the fetus in cattle.     

Equine fetal sex determination using circulating cell-free fetal DNA (ccffDNA)

In this study, polymerase chain reaction (PCR) reamplification of the first PCR product (2nd-PCR) and a qPCR assay were used to detect the sex determining region Y (SRY) gene from circulating cell-free fetal DNA (ccffDNA) in blood plasma of pregnant mares to determine fetal sex. The ccffDNA was isolated from plasma of 20 Thoroughbred mares (5-13 y old) in the final 3 mo of pregnancy (fetal sex was verified after foaling). For controls, plasma from two non-pregnant mares and two virgin mares were used, in addition to the non-template control. The 182 bp nucleotide sequence corresponding to the SRY-PCR product was confirmed by DNA sequencing. Based on SRY/PCR, 8 of 11 male and 9 of 9 female fetuses were correctly identified, resulting in a sensitivity of 72.7% (for male fetuses) and an overall accuracy of 85%. Furthermore, using SRY/2nd-PCR and qPCR techniques, sensitivity and accuracy were 90.9 and 95%, respectively. In conclusion, this study is apparently the first report of fetal sex determination in mares using ccffDNA.     

Sex‐specific survival to maturity and the evolution of environmental sex determination

Four decades ago, it was proposed that environmental sex determination (ESD) evolves when individual fitness depends on the environment in a sex‐specific fashion—a form of condition‐dependent sex allocation. Many biological processes have been hypothesized to drive this sex asymmetry, yet a general explanation for the evolution of sex‐determining mechanisms remains elusive. Here, we develop a mathematical model for a novel hypothesis of the evolution of ESD, and provide a first empirical test using data across turtles. ESD is favored when the sex‐determining environment affects annual survival rates equivalently in males and females, and males and females mature at different ages. We compare this hypothesis to alternative hypotheses, and demonstrate how it captures a crucially different process. This maturation process arises naturally from common life histories and applies more broadly to condition‐dependent sex allocation. Therefore, it has widespread implications for animal taxa. Across turtle species, ESD is associated with greater sex differences in the age at maturity compared to species without ESD, as predicted by our hypothesis. However, the effect is not statistically significant and will require expanded empirical investigation. Given variation among taxa in sex‐specific age at maturity, our survival‐to‐maturity hypothesis may capture common selective forces on sex‐determining mechanisms.     

Sexually dimorphic mandibular morphology in the first few years of life

Sex differences in the youngest skeletons are very subtle, and any method that can separate males and females significantly better than chance will be of value. Compounding the problem is a paucity of immature skeletons of documented age and sex. In 1992, S.R.L. examined 62 juvenile mandibles of white and black South Africans of known age and sex (from birth to 19 years) from the Dart Collection to determine if the sexes could be differentiated by morphologic traits. By age 6 years, adult chin shapes were already recognizable. Prior to that age, differences were observed in the shape of the inferior border of the symphysis and outline of the body. The male chin base extends steeply downward relative to the adjacent body, coming to a point or squaring off at the symphysis. In females, the symphysis descends gradually to a more rounded base, and even when pointed, the transition is not abrupt. On the outer border of the corpus, the sides diverge sharply to form a \_/ shape from a roughly horizontal anterior region in males, while the female contour is rounded, reflecting the smoothly curved transition from front to sides. These traits were manifest from the eruption of the central incisors until about 4 years of age. The features were tested on all 19 Dart Collection mandibles in that age range. Average accuracy for three different testers was 81%, and males were consistently identified more accurately than females. This new method was then tested on a known sex sample of 11 individuals from 0 to 7 years of age. These included CT scans of 9 French children and the remains of 2 South African black forensic cases. Sexing accuracy was 82% (9/11). The only two missexed cases were both female and over age 6 years. In conclusion, the results of this study indicate that it is possible to determine the sex of very young mandibles. The new sexually dimorphic morphologic configurations introduced here have demonstrated repeatable discrimination with the highest level of accuracy (81%) reported and tested for this age group. Preliminary research indicates that both the male and female shapes are clearly recognizable in archaeologic and premodern hominids as well as chimpanzees.     

Pteridine fluorescence for age determination of Anopheles mosquitoes

The age structure of mosquito populations is of great relevance to understanding the dynamics of disease transmission and in monitoring the success of control operations. Unfortunately, the ovarian dissection methods currently available for determining the age of adult mosquitoes are technically difficult, slow and may be of limited value, because the proportion of diagnostic ovarioles in the ovary declines with age. By means of reversed-phase HPLC this study investigated the malaria vectors Anopheles gambiae and An. stephensi to see if changes in fluorescent pteridine pigments, which have been used in other insects to determine the age of field-caught individuals, may be useful for age determination in mosquitoes. Whole body fluorescence was inversely proportional to age (P < 0.001, r2 > 91%) up to 30 days postemergence, with the regression values: y = 40580-706x for An. gambiae, and y = 52896-681x for An. stephensi. In both species the main pteridines were 6-biopterin, pterin-6-carboxylic acid and an unidentified fluorescent compound. An. gambiae had only 50-70% as much fluorescence as An. stephensi, and fluorescent compounds were relatively more concentrated in the head than in the thorax (ratios 1:0.8 An. gambiae; 1:0.5 An. stephensi). The results of this laboratory study are encouraging. It seems feasible that this simpler and faster technique of fluorescence quantification could yield results of equivalent accuracy to the interpretation of ovarian dissection. A double-blind field trial comparing the accuracy of this technique to marked, released and recaptured mosquitoes is required to test the usefulness of the pteridine method in the field.     

应用多重PCR技术检测性器官异常患者的性别决定基因

采用针对人SRY基因及X与Y染色体同源序列的两对引物进行多重聚合酶链反应技术检测204例新生儿脐血DNA,男性均显示590bp、 355bp及280bp 3条扩增带,女性只有590bp1条扩增带,性别鉴定准确率为100%。又检测47例性器官异常患,13例社会性别为女性者只出现590bp扩增带,与核型性别结果一致。 34例社会性别为男性者中,有2例SRY基因检测结果阴性,只出现590bp带,核型为46,XX,证明这两例患者社会性别不相符,经病理证实后应诊断为女性假两性畸形。 Abstract:This investigation adapted multiplex PCR technique with two pairs of primer to determine sex according to the human SRY gene and X,Y chromosome analogical sequence.We detected bellybutton blood DNA from 204 newborns.Male revealed three bands:590bp,355bp and 280bp,and females only had one band which was 590bp,the accuracy of sex determination was 100%.47 sexual abnormal patients were tested.The results showed that 13 cases,whose social sex were female,had one 590bp band which consistent with their chromosome type sex.In the rest 34 cases,whose social sex were male,2cases showed,on the contrary,only one 590bp band and their chromosome type were 46,XX.This proved that the two patients did not consistent with their social sex,and pathological analysis showed that they were female pseud-hermaphroditism.     

Is the first rib a reliable indicator of age at death assessment? Test of the method developed by Kunos et al (1999)

The aim of this study was to test the method Kunos and his colleagues (1999) developed on the first rib to assess adult age-at-death. The method was applied on a sample of known age and sex, selected from a Thai collection. The procedure being subjective, we chose to estimate an age category rather than a precise age.

The results show that only 55% of the individuals are correctly classified and that the number of subjects over 60 years old is under-estimated. Three explanations are given: the modifications of the first rib related with ageing are more variable than previously stated, the technique is too subjective and difficult to apply and the morphological changes of the first rib are different between North-American and Thai people.     

Determination of sex from the tibia

Determination of sex from the tibial shaft as well as the entire bone itself has not been generally investigated by osteologists . This paper is an attempt to fulfill this need. The purpose is to determine sex from both the complete tibia and the shaft at the nutrient foramen level. The sample was obtained from the Terry Collection and included 159 specimens of whites and blacks. The tibial length, and circumference, anteroposterior, and transverse measurements at the nutrient foramen level were analyzed by means of step-wise discriminant function analysis. It was found that the circumference alone could give, on the average, 80% accuracy in determining sex. The addition of other dimensions to the function increased the accuracy by about 4%. Comparisons of this study with those on the femur indicated that sexual dimorphism in the tibia was a result not only of the general growth and musculo-skeletal activity, but also of the genetic structure of the population, i.e., racial variation.     

Sex determination of three raptor species using morphology and molecular techniques

ABSTRACT.   Accurate identification of sex is important for many raptor studies, but may be difficult to determine in the field for some species. Because of size differences between males and females, morphological measurements have often been used to sex raptors. However, few investigators have examined the accuracy of using measurements of individuals made at one location to sex individuals of the same species at another location. Our objective was to develop more accurate region-specific methods for determining the sex of Red-tailed Hawks ( Buteo jamaicensis ), Red-shouldered Hawks ( B. lineatus ), and Cooper's Hawks ( Accipiter cooperii ) migrating through and wintering in California. We determined sex using a polymerase chain reaction (PCR)-based genetic test and grouped individuals based on sex, age, and geographic area. We did not combine groups due to differences in measurements between age classes and geographic areas. We then compared a suite of morphological measurements between males and females of each combination, and developed both a discriminant function and a flowchart to determine the sex of Red-tailed and Red-shouldered hawks in the field. The flowcharts were more accurate than the functions for both species. We also confirmed the accuracy of the current flowchart used to determine the sex of Cooper's Hawks migrating along the California coast. These region-specific methods for Red-tailed and Cooper's hawks were generally more accurate than published methods, possibly indicating different populations of these species and highlighting the importance of validating sexing methods when using them in different locations.     

Determination of sex from the hyoid bone

This article explores size differences related to sex in the hyoid bones from the Robert J. Terry Anatomical Collection. A series of measurements were taken from 398 hyoids, both fused and unfused. The inclusion of unfused hyoids in the study provides the opportunity to investigate previously unknown size differences between sexes as well as to determine their utility in determining sex. Two‐way ANOVA was used to explore differences in hyoid size as related to ancestry and sex. Discriminant function analysis was employed to test the ability of the hyoids to be classified by sex. Six discriminant function equations ranging in accuracy from 82% to 85% are provided, each of which is more accurate than many of the discriminant functions developed in past hyoid research, are simple to use, and can be used to estimate the sex of a hyoid regardless of its state of fusion. In addition to providing further information about the morphological form of the hyoid, these analyses provide a method that can be easily employed to assess sex of the individual from the hyoid bone. Am J Phys Anthropol 143:279–284, 2010. © 2010 Wiley‐Liss, Inc.     

Sexual dimorphism in human cranial trait scores: Effects of population,age, and body size

Sex estimation from the skull is commonly performed by physical and forensic anthropologists using a five‐trait scoring system developed by Walker. Despite the popularity of this method, validation studies evaluating its accuracy across a variety of samples are lacking. Furthermore, it remains unclear what other intrinsic or extrinsic variables are related to the expression of these traits. In this study, cranial trait scores and postcranial measurements were collected from four diverse population groups (U.S. Whites, U.S. Blacks, medieval Nubians, and Arikara Native Americans) following Walker's protocols (total n = 499). Univariate and multivariate analyses were utilized to evaluate the accuracy of these traits in sex estimation, and to test for the effects of population, age, and body size on trait expressions. Results revealed significant effects of population on all trait scores. Sample‐specific correct sex classification rates ranged from 74% to 94%, with an overall accuracy of 85% for the pooled sample. Classification performance varied among the traits (best for glabella and mastoid scores and worst for nuchal scores). Furthermore, correlations between traits were weak or nonsignificant, suggesting that different factors may influence individual traits. Some traits displayed correlations with age and/or postcranial size that were significant but weak, and within‐population analyses did not reveal any consistent relationships between these traits across all groups. These results indicate that neither age nor body size plays a large role in trait expression, and thus does not need to be incorporated into sex estimation methods. Am J Phys Anthropol 154:259–269, 2014. © 2014 Wiley Periodicals, Inc.     

Historical sex-specific distribution of Atlantic walrus (<Emphasis Type="Italic">Odobenus rosmarus rosmarus</Emphasis>) in Svalbard assessed by mandible measurements

We developed a discriminant function based on measurements of known-sex mandibles of walrus from the Canadian Arctic collected between 1983 and 1998 and used it to explore the sex ratio in the catches of walrus in Tusenøyane, south-eastern Svalbard, during the nineteenth century. Canadian mandibles older than 5 years of age of known sex were classified into correct sex with 100% accuracy by using two measurements. Applying the same discriminant function to 80 mandibles from Svalbard older than 5 years of age classified 48 (60%) as males and 32 (40%) as females. It also classified 584 aged and un-aged mandibles from Svalbard 67% (390) as males and 33% (194) as females. Eight of the aged jaws (10%) and 41 (7%) of the un-aged jaws had probabilities of classification into sex <80%. We stress the importance of being cautious in applying a discriminant function developed from Canadian mandibles to classify the sex of old weathered mandibles from Svalbard. However, we believe our results indicate that female walrus were once more common in south-eastern Svalbard than they are now.     

Mandibular ramus flexure and gonial eversion as morphologic indicators of sex

Recently, two mandibular traits--ramus flexure and gonial eversion--have come under close scrutiny (Loth & Henneberg 1996, 2000). The present study investigates the reliability of these two traits when each is applied as a single and independent indicator of sex, including the question of repeatability. The investigation was designed to give insights into possible confounding factors such as age and remodeling after tooth loss. Two samples, one of forensic (N = 153) and one of archaeological provenance (N = 80), were examined. The forensic sample was evaluated by a single observer while the archaeological sample was independently scored by three different observers. The results document that age and localized tooth loss seriously reduce the accuracy of these traits. For ramus flexure, male accuracy was only 66%, while female accuracy was even lower (32%). Overall accuracy was 59%. It is believed that the original scoring system devised by Loth and Henneberg (1996) creates an inherent bias in favor of males. For gonial eversion, a similar picture emerged (75.4% for males, 45.2% for females and 69.3% overall accuracy). Furthermore, both indicators are prone to intra- as well as inter-observer bias. While both possess some merit as sex indicators, they show marked functional and adaptive responses and may not be suitable for all samples.