The ecological significance of sulfur in the energy dynamics of salt marsh and coastal marine sediments

Sulfur is an important element in the metabolism of salt marshes and subtidal, coastal marine sediments because of its role as an electron acceptor, carrier, and donor. Sulfate is the major electron acceptor for respiration in anoxic marine sediments. Anoxic respiration becomes increasingly important in sediments as total respiration increases, and so sulfate reduction accounts for a higher percentage of total sediment respiration in sediments where total respiration is greater. Thus, sulfate accounts for 25% of total sediment respiration in nearshore sediments (200 m water depth or less) where total respiration rates are 0.1 to 0.3gCm^–1 day^–1 , for 50% to 70% in nearshore sediments with higher rates of total respiration (0.3 to 3gCm^–2 day^–1), and for 70% to 90% in salt marsh sediments where total sediment respiration rates are 2.5 to 5.5gcm^–2 day^–1 .During sulfate reduction, large amounts of energy from the respired organic matter are conserved in inorganic reduced sulfur compounds such as soluble sulfides, thiosulfate, elemental sulfur, iron monosulfides, and pyrite. Only a small percentage of the reduced sulfur formed during sulfate reduction is accreted in marine sediments and salt marshes. When these reduced sulfur compounds are oxidized, energy is released. Chemolithoautotrophic bacteria which catalyze these oxidations can use the energy of oxidation with efficiencies (the ratio of energy fixed in organic biomass to energy released in sulfur oxidation) of up to 21–37% to fix CO₂ and produce new organic biomass.Chemolithoautotrophic bacterial production may represent a significant new formation of organic matter in some marine sediments. In some sediments, chemolithoautotrophic bacterial production may even equal or exceed organoheterotrophic bacterial production. The combined cycle of anaerobic decomposition through sulfate reduction, energy conservation as reduced sulfur compounds; and chemolithoautotrophic production of new organic carbon serves to take relatively low-quality organic matter from throughout the sediments and concentrate the energy as living biomass in a discrete zone near the sediment surface where it can be readily grazed by animals.Contribution from a symposium on the role of sulfur in ecosystem processes held August 10, 1983, at the annual meeting of the A.I.B.S., Grand Forks, ND; Myron Mitchell, convenor.     

Factors influencing the extent and development of the oxic zone in sediments

Dissolved oxygen concentrations in river-sediment porewaters are reported and modelled using a zero-order reaction rate and the Monod equation. After mixing the sediments and allowing settling, the dissolved oxygen profile in the bed-sediment was expected to reach a steady-state rapidly (< 1 h). However changes in the vertical profile of oxygen over a period of 38 days revealed that the penetration of oxygen increased and the dissolved oxygen flux at the interface decreased with time, probably as the oxidation kinetics of organic matter and redox reactions in the sediment changed. Experiments with three contrasting silt and sand dominated sediments (organic matter content between 0.9 and 18%) at two water velocities (ca 10 and 20 cm s^–1) showed that the dissolved oxygen profiles were independent of velocity for each of the sediments. The most important controls on the reaction rate were the organic matter content and specific surface area of the sediment. A viscous diffuse-boundary-layer above the sediment was only detected in the experiments with the silt sediment where the sediment oxygen demand was relatively high. In the coarser sediments, the absence of a diffuse layer indicated that slow oxidation processes in the sediment controlled the dissolved oxygen flux at the interface. The problem of determining a surface reference in coarse sediment is highlighted. The results are discussed with reference to other studies including those concerned with estuarine and marine sediments.     

Factors controlling bacterial production in marine and freshwater sediments

We collected benthic bacterial production data measured by ³H thymidine incorporation (TTI) (25 studies), frequency of dividing cells (FDC) (3 studies), dark-C0₂ assimilation (1 study) and ³H-adenine uptake (2 studies) from the literature, which included 18 marine, 6 river, and 2 lake studies. In all of the studies that used the TTI method, ³H-DNA was isolated and incubations were carried out at in situ temperatures. Most of the researchers also determined ³H-DNA extraction efficiencies and isotope dilution, thus interpretable estimates of bacterial production were used in the analysis. In marine sediments, bacterial production rates were linked to bacterial biomass, bacterial abundance, sediment organic matter, temperature, and sediment chlorophyll a, with these variables explaining between 40% and 68% of the variation in production rates. Simple relationships between production and bacterial biomass or bacterial abundance, or between production and sediment organic matter, were improved by also including temperature in the analysis of marine sediments. Sediment organic matter explained an appreciable fraction (58%) of the observed production in freshwater sediments. Temperature was the most powerful predictor of the observed variability in specific growth rates (r ² = 0.48 and r ² = 0.58) in marine and freshwater sediments, respectively. Thus, bacterial production and specific growth rates are most closely linked to substrate supply and temperature in marine and freshwater sediments. Offprint requests to: B. C. Sander.     

Anaerobic and aerobic oxidation of ferrous iron at neutral pH by chemoheterotrophic nitrate-reducing bacteria

Nine out of ten anaerobic enrichment cultures inoculated with sediment samples from various freshwater, brackish-water, and marine sediments exhibited ferrous iron oxidation in mineral media with nitrate and an organic cosubstrate at pH 7.2 and 30° C. Anaerobic nitrate-dependent ferrous iron oxidation was a biological process. One strain isolated from brackish-water sediment (strain HidR2, a motile, nonsporeforming, gram-negative rod) was chosen for further investigation of ferrous iron oxidation in the presence of acetate as cosubstrate. Strain HidR2 oxidized between 0.7 and 4.9 mM ferrous iron aerobically and anaerobically at pH 7.2 and 30° C in the presence of small amounts of acetate (between 0.2 and 1.1 mM). The strain gained energy for growth from anaerobic ferrous iron oxidation with nitrate, and the ratio of iron oxidized to acetate provided was constant at limiting acetate supply. The ability to oxidize ferrous iron anaerobically with nitrate at approximately pH 7 appears to be a widespread capacity among mesophilic denitrifying bacteria. Since nitrate-dependent iron oxidation closes the iron cycle within the anoxic zone of sediments and aerobic iron oxidation enhances the reoxidation of ferrous to ferric iron in the oxic zone, both processes increase the importance of iron as a transient electron carrier in the turnover of organic matter in natural sediments. Received: 24 April 1997 / Accepted: 22 September 1997     

Anaerobic mineralization of marine sediment organic matter: Rates and the role of anaerobic processes in the oceanic carbon economy

Abstract

This paper addresses three related questions: (1) What factors control the efficiency of carbon burial in sediments? (2) Are rates of anaerobic organic matter degradation intrinsically lower than aerobic rates? (3) How important are anaerobic processes in the global marine sediment carbon economy?

Carbon burial efficiency (the ratio of the carbon burial rate and the carbon flux to the sediment surface) was estimated from literature data for a range of environments and was shown to be a function of sedimentation rate. No difference independent of sedimentation rate was found between aerobic and anaerobic sediments.

A review of recent microcosm and laboratory studies shows that anaerobic rates are not intrinsically lower than aerobic rates; fresh organic matter degrades at similar rates under oxic and anoxic conditions. Aerobic decomposition rates near the sediment surface are typically greater than anaerobic rates at depth because the most labile carbon is consumed before it can be buried in the anoxic zone.

A model approach was taken in estimating the importance of anaerobic processes in the global marine sediment economy, instead of extrapolating measured rates as done previously. The result, 150 Tg C yr^?1, is two to nine times lower than previous estimates. This rate is about 9% of the global aerobic carbon oxidation rate and is about equal to the rate of long‐term carbon burial. The importance of anaerobic processes in marine sediments lies in their role in determining the amount of carbon preserved, not in the amount of carbon remineralized overall.     

ATP als indikator für die biomasse mariner sedimente

Zusammenfassung Aus Sedimentproben wurde ATP mit Trispuffer-Lösung bei 100° extrahiert. Bei Anwendung der Luciferin-Luciferase-Methode zur Bestimmung von ATP lag die untere Grenze der Erfaßbarkeit bei 5x10^-8 g ATP/ml Sediment. Durch Multiplikation mit dem Faktor 50 wurden die ATP-Gehalte in Biomasse-Kohlenstoff umgerechnet. In Abhängigkeit vom Sedimenttyp konnten 0,13–1,6% des organischen Gesamtkohlenstoffgehaltes der Sedimente der lebenden Substanz zugeordnet werden.

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ATP as an indecator of biomass in marine sediments

Summary ATP was extracted from sediments with Tris buffer at 100° C. Using the luciferine-luciferase assay for the determination of ATP the lowest detectable concentration in the sediments was 5x10^-8 g ATP/ml Sediment. By multiplication with the factor 50 ATP levels were converted into biomass-carbon. Comparison with total organic carbon content of the sediments led to the conclusion that, depending on the type of sediment, the organic carbon content of living matter amounts to 0.13–1.6 per cent of the total organic carbon.

     

Geochemical partitioning and bioavailability of copper to aquatic plants in an artificial oxide-organic sediment

This study investigated the effects of competition between binding substrates (organic matter and iron oxide) and between metals (cadmium and copper), on the partitioning of sedimentary copper and its subsequent bioavailability to an aquatic plant. Organic matter and a synthesized iron oxide, ferrihydrite, were added singly and in combination to a series of sand sediments, which were then dosed with environmentally realistic concentrations of cadmium and copper and planted with rice,Oryza sativa. Organic matter controlled copper partitioning and bioavailability, whereas the synthetic ferrihydrite bound negligible amounts of either metal, even in the absence of organic matter. As organic matter concentrations increased, operationally-defined leachable copper decreased, organic-associated copper increased and the survival of rice plants improved in an approximately linear fashion. At a nominal starting copper concentration of 5.8 μg g dry wt⁻¹, plant survival after four weeks averaged 0–8% in sediments without organic matter, 25% in a sediment containing 0.18% organic matter and 58% in a sediment containing 0.36% organic matter. These results suggest that organic-associated forms of copper are unavailable to plants, and that the operational definition of ‘leachable’ copper (extracted with dilute ammonium acetate) adequately represents the species of copper that is (are) available to plants. Our study using a well-characterized artificial sediment supports the copper fractionation patterns and correlations between copper partitioning and bioavailability reported from the heterogeneous, poorly characterized sediments of natural lake and river sediments.     

In vitro and in situ studies on nitrate disappearance in water-sediment systems of the Camargue (southern France)

Results of in vitro and in situ experiments on nitrate disappearance from water-sediment systems in the Camargue are described.In the in vitro experiments two factors were studied: temperature and organic matter. After a first addition of KNO₃ to these sediments, the concentration of organic matter exerted a strong influence on the disappearance rate of nitrate at 25 °C and 15 °C but not at 2 °C. After a second addition of nitrate at 25 °C and 15 °C the denitrification rate increased by approximately 10%, probably because the activity of the bacterial population had increased.Experiments in situ in freshwater temporary marshes showed that nitrate disappeared at approximately twice the rate at similar temperature in vitro.After the first addition of nitrate in the in vitro experiments the concentration of nitrite in the water above the sediment reached about 10% of the concentration of total dissolved inorganic nitrogen at 2 °C and 15 °C. These high concentrations were not found after the first addition at 25 °C or after the second addition of nitrate at 25 °C and 15 °C. In the in situ experiments, however, high concentrations of nitrite were found.     

Rates and regulation of microbial iron reduction in sediments of the Baltic-North Sea transition

The rates and pathways of anaerobic carbon mineralization processes were investigated at seven stations, ranging from 10 to 56 m water depth, in the Kattegat and Belt Sea, Denmark. Organic carbon mineralization coupled to microbial Mn and Fe reduction was quantified using anaerobic sediment incubation at two stations that were widely separated geographically within the study area. Fe reduction accounted for 75% of the anaerobic carbon oxidation at the station in the northern Kattegat, which is the highest percentage so far reported from subtidal marine sediment. By contrast, sulfate reduction was the dominant anaerobic respiration pathway (95%) at the station in the Great Belt. Dominance of Fe reduction was related to a relatively high sediment Fe content in combination with active reworking of the sediment by infauna. The relative contribution of Fe reduction to anaerobic carbon oxidation at both stations correlated with the concentration of poorly crystalline Fe(III), confirming that the concentration of poorly crystalline Fe(III) exerts a strong control on rates of Fe reduction in marine sediments. The dependence of microbial Fe reduction on concentrations of poorly crystalline Fe(III) was used to quantify the importance of Fe reduction at sites where anaerobic incubations were not applied. This study showed that Fe reduction is an important process in anaerobic carbon oxidation in a wider area of the seafloor in the northern and eastern Kattegat (contribution 60 – 75%). By contrast, Fe reduction is of little significance (6 – 25%) in the more coarse-grained sediments of the shallower western and southern Kattegat, where a low Fe content was an important limiting factor, and in fine-grained sediments of the Belt Sea (4 – 28%), where seasonal oxygen depletion limits the intensity of bioturbation and thereby the availability of Fe(III). A large fraction of the total deposition of organic matter in the Kattegat and Belt Sea occurs in the northern Kattegat, and we estimate 33% of benthic carbon oxidation in the whole area is conveyed by Fe reduction.     

Thermophilic anaerobes in Arctic marine sediments induced to mineralize complex organic matter at high temperature

Marine sediments harbour diverse populations of dormant thermophilic bacterial spores that become active in sediment incubation experiments at much higher than in situ temperature. This response was investigated in the presence of natural complex organic matter in sediments of two Arctic fjords, as well as with the addition of freeze‐dried Spirulina or individual high‐molecular‐weight polysaccharides. During 50°C incubation experiments, Arctic thermophiles catalysed extensive mineralization of the organic matter via extracellular enzymatic hydrolysis, fermentation and sulfate reduction. This high temperature‐induced food chain mirrors sediment microbial processes occurring at cold in situ temperatures (near 0°C), yet it is catalysed by a completely different set of microorganisms. Using sulfate reduction rates (SRR) as a proxy for organic matter mineralization showed that differences in organic matter reactivity determined the extent of the thermophilic response. Fjord sediments with higher in situ SRR also supported higher SRR at 50°C. Amendment with Spirulina significantly increased volatile fatty acids production and SRR relative to unamended sediment in 50°C incubations. Spirulina amendment also revealed temporally distinct sulfate reduction phases, consistent with 16S rRNA clone library detection of multiple thermophilic Desulfotomaculum spp. enriched at 50°C. Incubations with four different fluorescently labelled polysaccharides at 4°C and 50°C showed that the thermophilic population in Arctic sediments produce a different suite of polymer‐hydrolysing enzymes than those used in situ by the cold‐adapted microbial community. Over time, dormant marine microorganisms like these are buried in marine sediments and might eventually encounter warmer conditions that favour their activation. Distinct enzymatic capacities for organic polymer degradation could allow specific heterotrophic populations like these to play a role in sustaining microbial metabolism in the deep, warm, marine biosphere.     

Aquaculture of Posidonia australis Seedlings for Seagrass Restoration Programs: Effect of Sediment Type and Organic Enrichment on Growth

Seeds of the seagrass Posidonia australis are desiccation sensitive and as there is no seed dormancy seeds cannot be stored for use in restoration projects. To realize the restoration potential of seed‐based restoration of Posidonia, this study investigated preconditioning seedlings of Posidonia in aquaculture facilities before transplanting to extend the restoration window from a few weeks (for fresh seed) to months or even years (for preconditioned seedlings). Here, we tested two levels of organic matter addition, 0 and 1.5% sediment dry weight and three sediment types; two heterogeneous sediments typical of low‐energy marine environments (1) unsorted calcareous and (2) unsorted silica, and a homogeneous sediment typical of high‐energy marine habitats (3) well‐sorted silica. We then evaluated seedling survival, biomass and development over a period of 7 months in tank culture. There was 100% survival over the 7‐month experimental period for seedlings. Seedling leaf, root, rhizome, and total biomass increased when organic matter was added to unsorted calcareous and unsorted silica sediment but not well‐sorted silica sediment, although this increase was significant only after 7 months of growth. The characteristics of the sediment also influenced seedling root length and architecture. Root length and number of lateral root branches were greatest in unsorted sediments and when organic matter was present. This study demonstrates that tank culture of P. australis enabled seedlings to be available for restoration purposes for at least 7 months, and with modification of the sediment composition, larger P. australis seedlings with more substantial root systems can be produced.     

Extraction,distribution and biodegradation of bacterial lipopolysaccharides in estuarine sediments

Lipopolysaccharides (LPS), added as whole bacteria to estuarine sediments, were extracted efficiently by both trichloroacetic acid (TCA) and phenol-water (PW). Amounts of recovered LPS were measured indirectly by analyses for ketodeoxyoctonate (KDO), -hydroxymyristic acid, immunodominant sugars and anticomplementary (AC) activity towards human complement. TCA was judged to be better than PW for routine extraction of sediments because, although it yielded 10–20% less LPS, it avoided contamination with non-LPS, high-molecular weight material with high AC activity. In sediment samples taken as cores from estuarine beaches, the concentration of endogenous LPS diminished rapidly with depth below the topmost 1 cm. KDO disappeared more rapidly with depth than AC activity. When known LPS was incubated with estuarine beach mud at 20–22°C for 3 weeks there was extensive biodegradation of both the lipid and polysaccharide components, the latter more rapidly. LPS-degrading bacteria were isolated.     

The effect of deposition of organic matter on phosphorus dynamics in experimental marine sediment systems

The effect of deposition of organic matter on phosphorus dynamics in sandy marine sediments was evaluated using an experimental system (boxcosms) and three different strategies: (1) no supply (2) one single addition (3) weekly additions of a suspension of algal cells (Phaeocystis spec.). Macrofauna (3 species, 6 individuals of each) were added to half of the boxes. Both in the case of the single and weekly additions a clear effect of increased organic matter loading on phosphorus dynamics was found. Following the organic matter addition, porewater phosphate concentrations in the upper sediment layer increased, phosphate release rates from the sediment increased by a factor 3–5 and in the boxes to which a single addition was applied NaOH-extractable phosphorus increased substantially. The increase in phosphate release rates from the sediment was attributed to mineralization of the added material and to direct release from the algal cells. No clear effect of the presence of macrofauna on sediment-water exchange of phosphate could be discovered. The macrofauna were very effective at reworking the sediment, however, as illustrated by the organic carbon profiles. It is hypothesized that the sediment-water exchange rates of phosphate were regulated by the layer of algal material which was present on the sediment surface in the fed boxes. In the boxes to which the single addition was applied porewater phosphate concentrations were lower and NaOH-extractable phosphorus was higher in the presence of macrofauna, suggesting that macrofauna can stimulate phosphate binding in the sediment.Publication no. 40 of the project Applied Scientific Research Netherlands Institute for Sea Research (BEWON)     

Sulphate,dissolved organic carbon,nutrients and terminal metabolic products in deep pore waters of an intertidal flat

This study addresses deep pore water chemistry in a permeable intertidal sand flat at the NW German coast. Sulphate, dissolved organic carbon (DOC), nutrients, and several terminal metabolic products were studied down to 5 m sediment depth. By extending the depth domain to several meters, insights into the functioning of deep sandy tidal flats were gained. Despite the dynamic sedimentological conditions in the study area, the general depth profiles obtained in the relatively young intertidal flat sediments of some metres depth are comparable to those determined in deep marine surface sediments. Besides diffusion and lithology which control pore water profiles in most marine surface sediments, biogeochemical processes are influenced by advection in the studied permeable intertidal flat sediments. This is supported by the model setup in which advection has to be implemented to reproduce pore water profiles. Water exchange at the sediment surface and in deeper sediment layers converts these permeable intertidal sediments into a “bio-reactor” where organic matter is recycled, and nutrients and DOC are released. At tidal flat margins, a hydraulic gradient is generated, which leads to water flow towards the creekbank. Deep nutrient-rich pore waters escaping at tidal flat margins during low tide presumably form a source of nutrients for the overlying water column in the study area. Significant correlations between the inorganic products of terminal metabolism (NH₄ ⁺ and PO₄ ³⁻) and sulphate depletion suggest sulphate reduction to be the dominant pathway of anaerobic carbon remineralisation. Pore water concentrations of sulphate, ammonium, and phosphate were used to elucidate the composition of organic matter degraded in the sediment. Calculated C:N and C:P ratios were supported by model results.     

Organic matter mineralization in an organic-rich sediment: Experimental stimulation of sulfate reduction by fish food pellets

Abstract The combined effects of organic matter additions and temperature on short chain fatty acid (SCFA) turnover, sulfate reduction and nutrient accumulation were examined in an organic-rich fish farm sediment. Fish food pellets, which contribute significantly to the organic matter loss from fish farms, were added to surface sediment at three loadings (2.8; 14.0; 28.0 mg ww g⁻¹ ww sediment; equivalent to organic matter loadings measured during fish farming) and incubated for 30 days in anaerobic bags at 5°C and 15°C. SCFA accumulated to high levels (acetate up to 85 mM, propionate up to 17 mM, butyrate up to 25 mM) in sediments amended with food pellets, and sulfate reduction was stimulated up to 30 times relative to unamended sediments. Sulfate reducers appeared saturated with substrates (SCFA) even in the lowest additions. A low C/N ratio (0.4–1.8) of the major mineralization products (TCO₂ and NH₄⁺) indicated preferential nitrogen mineralization in amended sediment compared with the total particulate pool (C/N = 8.8–11.9) and added food pellets (C/N = 8.4).     

Effects of sediment pretreatment on the performance of sediment microbial fuel cells

In the present study, the effects of different pretreatment methods for sediments on the performance of sediment microbial fuel cells (SMFCs) were evaluated. Autoclaved (30 and 60 min), and heated (150 °C, 3 h) sediments demonstrated high power density, compared with control and heated (60 °C, 3 h) sediments. An SMFC with heated (60 °C, 3 h) sediment was found to easily form a biocathode. The power density of an SMFC with heated (150 °C, 3 h) sediment was 214 mW m(-2) on day 24. Furthermore, autoclaved (30 and 60 min) and heated (3 h, 60 and 150 °C) sediments accelerated the production of dissolved organic matter (DOM). The DOM in heated (60 °C, 3 h) sediments had larger molecular sizes. The present study demonstrates that SMFCs can have high power density and high loss on ignition removal efficiencies when produced from sediments by suitable pretreatment methods.     

Is KCl a reliable extractant of15NH 4 + added to coastal marine sediments?

The release of NH ₄ ⁺ and¹⁵N-labelled NH ₄ ⁺ by one-step KCl extraction was assessed in different types of coastal marine sediments. KCl was efficient to extract NH ₄ ⁺ from sandy sediments and less efficient in silt sediments, where an extended extraction period was required for obtaining a maximum NH ₄ ⁺ yield. Extraction at 0 or 20 °C had only a little effect on the efficiency of KCl. KCl gave always non complete recovery of¹⁵NH ₄ ⁺ in silt sediments. However, the added label could be fully recovered by addition of 80 mol·cm^–3 exogenous NH ₄ ⁺ prior to KCl, or when NaCl or ASW replaced KCl.¹⁵NH ₄ ⁺ was added to non-biological silt sediment, which was incubated at 0 °C up to 16 hours, to see the effect of physical processes on the partition of¹⁵NH₄ among porewater (29–49%) exchangeable (9–30%) and non-extractable, organic bound pools (24–42%). Total¹⁵N recovery was approximately 100%. KCl failed to remove¹⁵NH₄ which entered to unknown, bound pools in sediment. Only shortly after addition of¹⁵N (0.1 h), the extraction period resulted in significantly different¹⁵N recoveries (P < 0.05) in KCl extractable NH ₄ ⁺ , 17% versus 9% of label was recovered after 1 min or 60 min extraction of sediment, respectively. Two hours of incubation time were required for complete equilibrium of¹⁵NH ₄ ⁺ among porewater, exchangeable and organic bound pools. Sediments (silt) to which¹⁵NH ₄ ⁺ has been added in order to measure NH ₄ ⁺ turn-over and KCl is used as extractant, should be incubated for at least 2 hours, before taking a zero-time sample.     

Preservation potential of ancient plankton DNA in Pleistocene marine sediments

Recent studies have shown that ancient plankton DNA can be recovered from Holocene lacustrine and marine sediments, including from species that do not leave diagnostic microscopic fossils in the sediment record. Therefore, the analysis of this so-called fossil plankton DNA is a promising approach for refining paleoecological and paleoenvironmental information. However, further studies are needed to reveal whether DNA of past plankton is preserved beyond the Holocene. Here, we identified past eukaryotic plankton members based on 18S rRNA gene profiling in eastern Mediterranean Holocene and Pleistocene sapropels S1 (~9 ka), S3 (~80 ka), S4 (~105 ka), and S5 (~125 ka). The majority of preserved ~400- to 500-bp-long 18S rDNA fragments of microalgae that were studied in detail (i.e. from haptophyte algae and dinoflagellates) were found in the youngest sapropel S1, whereas their specific lipid biomarkers (long-chain alkenones and dinosterol) were also abundant in sediments deposited between 80 and 124 ka BP. The late-Pleistocene sediments mainly contained eukaryotic DNA of marine fungi and from terrestrial plants, which could have been introduced via the river Nile at the time of deposition and preserved in pollen grains. A parallel analysis of Branched and Isoprenoid Tetraethers (i.e. BIT index) showed that most of the organic matter in the eastern Mediterranean sediment record was of marine (e.g. pelagic) origin. Therefore, the predominance of terrestrial plant DNA over plankton DNA in older sapropels suggests a preferential degradation of marine plankton DNA.     

Simultaneous occurrence of denitrification and nitrate ammonification in sediments of the French Mediterranean Coast

Dissimilatory nitrate reductions in coastal marine sediment of Carteau Cove (French Mediterranean Coast) were studied between April 1993 and July 1994. Simultaneous determination of denitrification and dissimilatory nitrate reduction to ammonium was achieved by using a combination of acetylene blockage and 15N techniques. After short incubations (maximum 5 h), a part of 15N labelled nitrate added to the sediment was recovered as ammonium without incorporation in organic matter. The result indicate that a fraction of nitrate was reduced to ammonium by a dissimilatory mechanism instead of denitrifying. Denitrifying and nitrate ammonifying activities ranged from 0 to 19.8 μmol l-1 d-1 and from 2.3 to 83.2 μmol l-1 d-1, respectively. Denitrification rates were highest in early spring whereas nitrate ammonification were highest in fall. The recovery of nitrate reduced as N2O-N plus ammonium was between 40 and 100%, the highest nitrogen losses were recorded in July. Depending on the station and time of year denitrification accounted for between 0 and 43% of the total nitrate reduction whereas dissimilatory nitrate reduction to ammonium (DNRA) accounted for between 18 and 100%. The reduction rate data suggest that the pathway of nitrate reduction to ammonium may be important in coastal sediments. This revised version was published online in July 2006 with corrections to the Cover Date.     

Mesocosm experiments: mimicking seasonal developments of microbial variables in North Sea sediments

This study investigated the suitability of mesocosms for studying the seasonal development of microbial variables in the benthic system of the North Sea. Undisturbed sediment cores were taken from two locations in the North Sea, one with sandy sediment (28 m depth) and the other with silty sediment (38 m depth) and installed in mesocosms in January–April 1989. Cores were kept as in situ temperature in the dark until December 1989. One set of sandy and silty sediments was starved and the other set received a supply of organic matter in May–June, simulating the settlement of the spring bloom of Phaeocystis pouchetii. Seasonal developments in bacterial production (methyl ³H-thymidine incorporation), abundance and biomass of bacteria and nanoflagellates and oxygen consumption were compared between the mesocosms and the field in surface sediments every 1.5 to 2.5 months. Effects of seasonal temperature variations (range 6–17.5 °C) on microbial variables in starved mesocosms were limited, which possibly indicates a subordinate role of temperature in microbial processes in North Sea sediments. Organic matter produced a direct response in bacterial production and oxygen consumption in mesocosms. Bacterial and protozoan abundance also increased. The effect of the organic input disappeared within 2 months and values of enhanced variables declined to initial levels. The organic matter enrichment in mesocosms apparently did not provide sufficient energy to keep the microbenthos active at field levels through summer.These results suggest that in the silty sediments in the field, organic matter is available for bacterial production throughout summer. In sandy sediments, the major organic matter input, which sets the seasonal pattern, appears to be in June. Apparently the seasonal development of microbial variables can be mimicked in mesocosms with organic matter supplies. Differences between the field and mesocosms are further illustrated by carbon budgets. Recycling of bacterial biomass was required to meet the bacterial carbon demand in the budget.Publication No. 22 of the project Applied Scientific Research Neth. Inst. for Sea Res. (BEWON).