Genetic structure of traditional varieties of bitter manioc in three soils in Central Amazonia

Manioc is the most important food crop that originated in Amazonia. Many studies have increased our understanding of its evolutionary dynamics under cultivation. However, most of them focused on manioc cultivation in environments with low soil fertility, generally Oxisols. Recent ethnobotanical observations showed that bitter manioc also performs well in high fertility soils, such as Amazonian dark earths (ADE) and the floodplain. We used 10 microsatellite loci to investigate the genetic diversity and structure of bitter manioc varieties grown in different soil types in communities of smallholder farmers along the middle Madeira River in Central Amazonia. The genetic diversity of some sweet varieties and seedlings was also evaluated. Adult individuals showed higher levels of genetic diversity and smaller inbreeding coefficients (A ( R ) = 5.52, H ( O ) = 0.576, f = 0.086) than seedlings (A ( R ) = 4.39, H ( O ) = 0.421, f = 0.242). Bitter manioc varieties from the floodplain showed higher levels of genetic diversity (A ( R ) = 5.19, H ( O ) = 0.606) than those from ADE (A ( R ) = 4.45, H ( O ) = 0.538) and from Oxisols (A ( R ) = 4.15, H ( O ) = 0.559). The varieties grown in the floodplain were strongly differentiated from the varieties grown in Oxisols (F ( ST ) = 0.093) and ADE (F ( ST ) = 0.108), suggesting important genetic structuring among varieties grown in the floodplain and upland soils (ADE and Oxisols). This is the first time that genetic divergence of bitter manioc varieties in cultivation in different Amazonian soils in a small geographic area is reported.     

Convergent adaptations: bitter manioc cultivation systems in fertile anthropogenic dark earths and floodplain soils in central amazonia

SHIFTING CULTIVATION IN THE HUMID TROPICS IS INCREDIBLY DIVERSE, YET RESEARCH TENDS TO FOCUS ON ONE TYPE: long-fallow shifting cultivation. While it is a typical adaptation to the highly-weathered nutrient-poor soils of the Amazonian terra firme, fertile environments in the region offer opportunities for agricultural intensification. We hypothesized that Amazonian people have developed divergent bitter manioc cultivation systems as adaptations to the properties of different soils. We compared bitter manioc cultivation in two nutrient-rich and two nutrient-poor soils, along the middle Madeira River in Central Amazonia. We interviewed 249 farmers in 6 localities, sampled their manioc fields, and carried out genetic analysis of bitter manioc landraces. While cultivation in the two richer soils at different localities was characterized by fast-maturing, low-starch manioc landraces, with shorter cropping periods and shorter fallows, the predominant manioc landraces in these soils were generally not genetically similar. Rather, predominant landraces in each of these two fertile soils have emerged from separate selective trajectories which produced landraces that converged for fast-maturing low-starch traits adapted to intensified swidden systems in fertile soils. This contrasts with the more extensive cultivation systems found in the two poorer soils at different localities, characterized by the prevalence of slow-maturing high-starch landraces, longer cropping periods and longer fallows, typical of previous studies. Farmers plant different assemblages of bitter manioc landraces in different soils and the most popular landraces were shown to exhibit significantly different yields when planted in different soils. Farmers have selected different sets of landraces with different perceived agronomic characteristics, along with different fallow lengths, as adaptations to the specific properties of each agroecological micro-environment. These findings open up new avenues for research and debate concerning the origins, evolution, history and contemporary cultivation of bitter manioc in Amazonia and beyond.     

Useful Species Richness,Proportion of Exotic Species,and Market Orientation on Amazonian Dark Earths and Oxisols<Superscript>1</Superscript>

Useful Species Richness, Proportion of Exotic Species, and Market Orientation on Amazonian Dark Earths and Oxisols Anthropogenic soils of Amazonia, known as Amazonian Dark Earths (ADE), are environments with elevated soil fertility that can produce crops that otherwise yield poorly on the leached and highly acidic Oxisols that dominate much of the basin. While ADE sites near urban centers often attract commercial horticultural production of nutrient–demanding exotics, these soils are also considered possibly unique reservoirs of endemic agrobiodiversity because of their relationship to pre–Columbian indigenous occupation. Through botanical surveys and interviews with smallholder farmers, this study compared useful species richness, proportion of exotic species, and market orientation of farms situated on ADE and non–anthropogenic Oxisols in the municipality of Borba in Central Brazilian Amazonia. Species richness was similar on Amazonian Dark Earth and Oxisol farms (19.6 spp vs. 18.3 spp); however, ADE farms showed significantly higher proportions of exotic species (39% vs. 26%; p = 0.025). Furthermore, ADE farms in Borba demonstrated significantly higher market orientation (61.0% vs. 47.3%; p = 0.028), likely a result of the advantage of Amazonian Dark Earths for production of crops that are nutrient–demanding or pH–sensitive crops that have higher values in the nearby regional market of Manaus.     

Crop Diversity on Anthropogenic Dark Earths in Central Amazonia

A recent archaeological survey demonstrates that one of the most durable of all forms of pre-Columbian landscape transformation, Amazonian Dark Earths (ADE; soils formed by pre-Columbian settlement), are widespread along the course of the Madeira River, Central Amazonia, Brazil. We hypothesize that processes of crop cultivation and management by human populations today in landscapes that were intensively transformed during the pre-Columbian period will diverge from those in environments where human agency has not left such a heavy footprint. In order to test this hypothesis, we compare bitter manioc fields, homegardens and secondary forests on ADE with those on non-anthropogenic soils along the lower and middle Madeira River. We demonstrate that crop species and landrace populations diverge on anthropogenic and non-anthropogenic soils as a result of the interaction between human selection and management, soil physical and chemical properties, and plant responses over time. Hence, crop species selection and abundance and therefore agrobiodiversity is contingent on anthropogenic soils in Central Amazonia.     

“Made in Brazil”: Human Dispersal of the Brazil Nut (<Emphasis Type="Italic">Bertholletia excelsa</Emphasis>, Lecythidaceae) in Ancient Amazonia<Superscript>1</Superscript>

“Made in Brazil”: Human Dispersal of the Brazil Nut ( Bertholletia excelsa , Lecythidaceae) in Ancient Amazonia. The Brazil nut, Bertholletia excelsa, is a colossal tree of terra firme forest whose seeds represent the most important non-timber forest product in Amazonia. Its peculiarly inefficient dispersal strategy and discontinuous distribution have led some to hypothesize anthropogenic origins, but evidence to date has been inconclusive. Here we present results of a multidisciplinary study addressing this question. A review of the geographic distribution of B. excelsa and comparison with that of similar Lecythis species suggest a number of anomalies that are consistent with a recent and wide colonization of Bertholletia. Published studies and field observations indicate that anthropogenic disturbance facilitates Brazil nut regeneration. Recent genetic studies showing no sequence diversity and no geographical structuring of within-population variability support a rapid and recent irradiation from an ancestral population. Historical linguistic analysis of indigenous terms for Brazil nut suggests a northern/eastern Amazonian origin for Bertholletia, with a concomitant spread of Brazil nut distribution or cultivation to the south and west. Such an expansion would have been particularly facilitated by the emergence of intensive bitter manioc cultivation and networks of interethnic trade beginning in the first millennium C.E. Together, ecological, phytogeographic, genetic, linguistic, and archeological data reinforce the hypothesis that ancient Amazonian peoples played a role in establishing this emblematic and economically important rainforest landscape.     

Study on high-temperature-resistant and high-yield <Emphasis Type="Italic">Laminaria</Emphasis> variety “Rongfu”

Hybridization of gametophytes, continuous self-crossing and targeted selection were utilized to breed a new Laminaria variety. After five-generation selection breeding, the new variety “Rongfu” was obtained. Its male parent “Yuanza No.10” was the high-yield cultivation variety, and its female parent was variety “Fujian” which could tolerate relatively high seawater temperature. “Yuanza No.10” and “Fujian” were different but complement in their morphological characteristics and biological habits. Variety “Rongfu” was bred through their hybridization which exhibited high-yield potential and high seawater temperature tolerance. The results of traits evaluation in consecutive years showed that “Rongfu” attained higher yields by 24–27% compared to the control (widely used commercial variety) and also contained considerable amounts of iodine, mannitol, and algin. When seawater temperature was 18–21°C, the blade growth of “Rongfu” was maintained and tissue loss by abrasion was significantly lower than the control. Since the adoption of variety “Rongfu” in 2001, its cultivation areas have been extended to Shandong, Fujian and Guangdong province and have reached 14,133 ha currently, i.e., almost one-tenth of the total cultivation areas of Laminaria in China. The results of Random Amplified Polymorphic DNA analysis showed that the relationship between “Rongfu” and other cultivation varieties in China was very close.     

Homegardens on Amazonian Dark Earths,Non-anthropogenic Upland,and Floodplain Soils along the Brazilian Middle Madeira River Exhibit Diverging Agrobiodiversity<Superscript>1</Superscript>

Homegardens on Amazonian Dark Earths, Non-anthropogenic Upland, and Floodplain Soils along the Brazilian Middle Madeira River Exhibit Diverging Agrobiodiversity. We test the hypothesis that the agrobiodiversity associated with homegardens on three different soils—upland Amazonian Dark Earths (ADE) and Oxisols (OX), and Fluvent Entisols (FL)—commonly found along the middle Madeira River in the municipality of Manicoré, Amazonas State, Brazil, is different due to the contrasting biotic, abiotic, and cultural settings specific to each of these soils. Using data from interviews with 63 farmers about food and utility species, we compare structural and floristic characteristics of homegarden agrobiodiversity. The density of individuals is higher on ADE than on the other soils (mean ± standard deviation: 715 ± 363 on ADE, 474 ± 283 on OX, 642 ± 399 on FL). ADE and OX have higher species richness (28.2 ± 5.6 on ADE, 25 ± 3.7on OX, 23.6 ± 5 on FL), while ADE and FL have a greater degree of domestication (2 ± 0.6 on ADE, 1.3 ± 0.5 on OX, 2.3 ± 0.6 on FL). ADE and OX have greater proportions of richness, density, and coverage composed of South American species, while FL has greater proportions of richness and density composed of Old World species. ADE has higher proportions of density and coverage of Mesoamerican species. Floristic composition is also different between soils: ADE occupies an intermediate position, composed of species associated with each of the other soil types and species that are most common on ADE. These differences in agrobiodiversity emerge through the interaction of human agency, plant responses, and the unique properties of soils in relation to socioeconomic and historical trajectories over time.     

Amazonian Dark Earth Shapes the Understory Plant Community in a Bolivian Forest

Amazonian Dark Earths (ADE) are the result of human modification of the Amazonian landscape since pre‐Columbian times. ADE are characterized by increased soil fertility compared to natural soils. In the Amazonian forest, soil fertility influences understory herb and fern species composition. However, little research has been done to evaluate the effect of ADE on the composition of the understory community. We evaluated the effects of ADE and soil in 36 plots (150 m × 4 m) established in a Bolivian moist forest (La Chonta). For each plot, we determined soil nutrients, and the composition, richness, and abundance of terrestrial fern, angiosperm herb, and understory palm species. We found that the presence of ADE created a gradient in soil nutrients and pH that affected the understory species composition especially of ferns and palms. Additionally, the higher nutrient concentration and more neutral soil pH on ADE soils caused a decrease of ferns species richness. We therefore conclude that the current composition of the understory community in this particular Bolivian forest is a reflection of past human modifications of the soil.     

Traditional Knowledge and Management of <Emphasis Type="Italic">Feijoa (Acca sellowiana)</Emphasis> in Southern Brazil

Traditional Knowledge and Management of Feijoa (Acca sellowiana) in Southern Brazil. This paper investigates traditional knowledge of the use and management of Acca sellowiana in southern Brazil. Fifty-six informants from three rural communities were assigned to one of four subgroups (“maintainers,” “managers,” “cultivators,” or “users”) based on their responses regarding management and use of A. sellowiana. Traditional knowledge related to use of this species is widespread among rural residents, but traditional knowledge related to management is fragmented depending on whether one uses, manages, or cultivates the species. Knowledge held in rural communities suggests that A. sellowiana could play an expanded role in local economies as well as biodiversity conservation. We suggest that participatory research could stimulate greater local use as well as on-farm conservation of A. sellowiana.     

The redistribution of soil water by tree root systems

Plant roots transfer water between soil layers of different water potential thereby significantly affecting the distribution and availability of water in the soil profile. We used a modification of the heat pulse method to measure sap flow in roots of Grevillea robusta and Eucalyptus camaldulensis and demonstrated a redistribution of soil water from deeper in the profile to dry surface horizons by the root system. This phenomenon, termed “hydraulic lift” has been reported previously. However, we also demonstrated that after the surface soils were rewetted at the break of season, water was transported by roots from the surface to deeper soil horizons – the reverse of the “hydraulic lift” behaviour described for other woody species. We suggest that “hydraulic redistribution” of water in tree roots is significant in maintaining root viability, facilitating root growth in dry soils and modifying resource availability. Received: 26 January 1998 / Accepted: 15 April 1998     

Classification and Use of Natural and Anthropogenic Soils by Indigenous Communities of the Upper Amazon Region of Colombia

Outsiders often oversimplify Amazon soil use by assuming that abundantly available natural soils are poorly suited to agriculture and that sporadic anthropogenic soils are agriculturally productive. Local perceptions about the potentials and limitations of soils probably differ, but information on these perceptions is scarce. We therefore examined how four indigenous communities in the Middle Caquetá River region in the Colombian Amazon classify and use natural and anthropogenic soils. The study was framed in ethnopedology: local classifications, preferences, rankings, and soil uses were recorded through interviews and field observations. These communities recognized nine soils varying in suitability for agriculture. They identified anthropogenic soils as most suitable for agriculture, but only one group used them predominantly for their swiddens. As these communities did not perceive soil nutrient status as limiting, they did not base crop-site selection on soil fertility or on the interplay between soil quality and performance of manioc genetic resources.     

Allometric Effects of <Emphasis Type="Italic">Agriophyllum squarrosum</Emphasis> in Response to Soil Nutrients,Water, and Population Density in the Horqin Sandy Land of China

We monitored the allometric effects for greenhouse-grown Agriophyllum squarrosum plants in response to variations in population density and the availability of soil nutrients and water. Biomass allocations were size-dependent. The plasticity of roots, stems, leaves, and reproductive effort was “true” in response to changes in nutrient content. At a low level of soil minerals, plants allocated more resources to the development of roots and reproductive organs than to leaves, but data for stem allocations were consistent for tradeoffs between the effects of nutrients and plant size. The plasticities of leaf allocation and reproductive effort were “true” whereas those of root and stem allocations were “apparent” in response to fluctuations in soil water, being a function of plant size. Decreasing soil water content was associated with higher leaf allocation and lower reproductive effort. Except for this “apparent” plasticity of leaf allocation, none was detected with population density on biomass allocation. Architectural traits were determinants of the latter. For roots, the determining trait was the ratio of plant height to total biomass; for stems and reproduction, plant height; and for leaves, the ratio of branch numbers to plant height.     

<Emphasis Type="Italic">Melanopsis</Emphasis> from Al-Qarn,Jordan Valley (Gastropoda: Cerithioidea)

Fossil species ofMelanopsis from a freshwater formation in the Jordan Valley (near Al-Qarn) were investigated and the deposits containing these species are formally described as Al-Qarn Formation. Four species were found:Melanopsis buccinoidea Olivier,M. tchernovi Heller & Sivan,M. costata Olivier andM. aaronsohni Blanckenhorn.Melanopsis costata was represented by two groups, “stepped” and “non-stepped”, the latter differing in its lower figurativity index. Intermediates were found betweenM. buccinoidea andM. tchernovi; they may be hybrids. TheMelanopsis assemblage bridges the faunal gap, in the Jordan Valley, between the 2 Ma lake of ‘Erq el Ahmar on the one hand and the 0.8–1.7 Ma lake of ‘Ubeidiya on the other. This suggests an early Pleistocene age of about 1.8 million years for the Al-Qarn Formation.     

“Australopithecus afarensis”: A composite species

In response to a critique byFerguson (1989),Leonard (1991) reiterates most of his original arguments for supporting “Australopithecus afarensis”Johanson, White, andCoppens, 1978 as a single species. He disregards the principle of morphological equivalence by comparing the dental metrics and morphology of a hominid with those of species of the Pongidae, which do not correspond with the degree of variation in hominids, instead of with those of species of the Hominidae. He fails to refute clear evidence that the range of variation of dental metrics and morphology in “A. afarensis” exceeds that seen in species of the Hominidae. On the basis of extreme variation, “A. afarensis” is, therefore, interpreted as representing a composite species.     

Association between contrasting methane emissions of two rice (<Emphasis Type="Italic">Oryza sativa</Emphasis> L.) cultivars from the irrigated agroecosystem of northeast India and their growth and photosynthetic characteristics

Over two consecutive years in the North Bank Plain Zone of Assam, India, during the spring growing season (February–June) of- 2006 and 2007 we examined effects of morpho-physiological characteristics of rice (Oryza sativa L.) plants in relation to methane (CH₄) emission from paddy fields. Traditional cultivar “Agni” and modern improved cultivar “Ranjit” were grown in light textured loamy soil under irrigation. A higher seasonal integrated methane flux (E _sif) was recorded from “Agni” compared to “Ranjit”. Both cultivars exhibited an emission peak during active vegetative growth and a second peak at panicle initiation. Leaf and tiller number, leaf area, length, and volume of root were greater in “Agni”, but grain yield and yield-related parameters such as increased photosynthate partitioning to panicles at the expense of roots were greater in “Ranjit”. “Ranjit” also photosynthesed faster than “Agni” during panicle development but slower than “Agni” at tillering. In both the years, a higher soil organic carbon content was recorded in plots of “Agni”. Our results suggest that in “Agni” enhanced diversion of photosynthate to roots resulted in more substrate being available to methanogenic bacteria in the rhizosphere. Additionally, the more extensive vegetative growth of this cultivar may enhance methane transport from the soil to the above-ground atmosphere.     

Genetic diversity and relationship of clonal tea (<Emphasis Type="Italic">Camellia sinensis</Emphasis>) cultivars in China as revealed by SSR markers

Tea plant [Camellia sinensis (L.) O.Kuntze)] is one of the most popular non-alcoholic beverage crops in the world today. In recent years, many clonal tea cultivars have been developed and widely planted to replace the diverse traditional tea populations. In this article, we study the relationships between classifications based on simple sequence repeat (SSR) markers and on morphological traits for 185 tea plant cultivars. Results show that the genetic diversity index (H) is between 0.229 and 0.803, and the mean value is 0.543; the observed heterozygosity (H _o) ranges from 0.103 to 0.683, with an average of 0.340, while the genetic identity varies from 0.267 to 0.984. Based on tea-making properties, the genetic diversity in the “black-green tea” group is much higher than in the “Oolong tea” group. Based on morphological traits, cluster analysis classifies the 185 cultivars into three groups, “group I,” “group II” and “group III.” Most cultivars are related based on the geographical origin and their genetic backgrounds.     

Phenanthrene toxicity and dissipation in rhizosphere of grassland plants (Lolium perenne L. and Trifolium pratense L.) in three spiked soils

Rhizodegradation is a technique involving plants that offers interesting potential to enhance biodegradation of persistent organic pollutants such as polycyclic aromatic hydrocarbons (PAHs). Nevertheless, the behaviour of PAHs in plant rhizosphere, including micro-organisms and the physico-chemical soil properties, still needs to be clarified. The present work proposes to study the toxicity and the dissipation of phenanthrene in three artificially contaminated soils (1 g kg^-1 DW). Experiments were carried out after 2 months of soil aging. They consisted in using different systems with two plant species (Ryegrass—Lolium perenne L. var. Prana and red clover—Trifolium pratense L. var. fourragère Caillard), three kinds of soils (a silty-clay-loam soil “La Bouzule”, a coarse sandy-loam soil “Chenevières” and a fine sandy-loam soil “Maconcourt”). Phenanthrene was quantified by HPLC in the beginning (T ₀) and the end of the experiments (30 days). Plant biomass, microbial communities including mycorrhizal fungi, Rhizobium and PAH degraders were also recorded. Generally phenanthrene contamination did not affect plant biomass. Only the red clover biomass was enhanced in Chenevières and La Bouzule polluted soils. A stimulation of Rhizobium red clover colonisation was quantified in spiked soils whereas a drastic negative phenanthrene effect on the mycorrhization of ryegrass and red clover was recorded. The number of PAH degraders was stimulated by the presence of phenanthrene in all tested soils. Both in ryegrass and red clover planted soils, the highest phenanthrene dissipation due to the rhizosphere was measured in La Bouzule soils. On the contrary, in non-planted soils, La Bouzule soils had also the lowest pollutant dissipation. Thus, in rhizospheric and non-rhizospheric soils the phenanthrene dissipation was found to depend on soil clay content.     

Isolation of some strains ofCorynebacterium fascians (Tilford) Dowson in Czechoslovakia

Four strains of the phytopathogenic bacteriumCorynebacterium fascians (Tilford)Dowson were selected from our isolates and deposited in the Czechoslovak National Collection of Type Cultures (CNCTC) of the Institute of Hygiene and Epidemiology in Prague. Two very virulent (Cor 83/82 “UPR” and Cor 82/81 “UP”) and one avirulent (Cor 81/80 “CP1b”) pelargonium strains, producing acid from rhamnose, were isolated from fasciations onPelargonium zonale W. One avirulent celery strain ofC. fascians (Cor 80/80 “CF4a”) was isolated from a root expiant ofApium graveolens L. growing on a nutrient mediumin vitro. Morphological, cultural, physiological and biochemical characteristics of these selected Czechoslovak isolates were compared with the American patented strain cotype ATCC 12974.     

Piaroa Manioc Varietals: Hyperdiversity or Social Currency?

The maintenance of exceptionally high numbers of folk varieties by the Piaroa people of the Venezuelan Amazon is considered. We cataloged 113 manioc folk varieties, their nomenclature, use and relevant characters, revealing significant insights into the role of manioc in Piaroa social life. Through a qualitative investigation of the cultivation, processing and symbolic significance of manioc (Manihot esculenta) in two Piaroa regions over a period of 18 years, we have found that such agrobiodiversity can only be fully explained by a combination of multiple factors, including pragmatic and ecological considerations, the subtle and complex diversity of Piaroa manioc preparations and a variety of sociocultural factors, such as manioc’s role as a mediator of social relationships and as a marker of cultural and social heritage.

Typostrophism in Palaeozoic Ammonoids?

The anti-Darwinian “Typostrophe Theory” of O.H.Schindewolf can be put to the test by revisiting the ammonoid examples on which this macroevolutionary model was founded. It is shown that none of the three theoretical elements saltationism, internalism, and cyclism can be supported by empirical data obtained from ammonoid research. Putative saltations (“Typogenesis”) were feigned because of the lack of knowledge of intermediate forms. Internalistic and orthogenetic development (“Typostasis”) can only be favoured by neglecting possible functions of morphological characters. Preprogrammed extinction of “degenerated” clades (“Typolysis”) is unlikely when ruling out anthropocentric views regarding ammonoid morphology. In terms of evolution of Palaeozoic ammonoids, there is no basis for the preference of the “Typostrophe Theory” or some of its composing elements, including the “Type Concept” and “Proterogenesis”, over the Darwinian evolutionary model and the Modern Synthesis.