湖泊硫循环微生物研究进展

湖泊是响应气候和环境变化的关键生态系统,是研究元素(如碳、氮和硫等)生物地球化学循环的热点环境。湖泊(尤其咸盐湖)具有硫酸盐含量高且含硫化合物种类丰富的特点,因而湖泊中硫元素生物地球化学循环过程非常活跃。微生物是驱动湖泊硫循环的重要推手。因此,研究湖泊中微生物参与的硫元素生物地球化学循环过程以及相关微生物类群构成,对于深入探索微生物在湖泊生态系统中的作用具有重要意义。本文综述了湖泊中驱动硫循环的微生物(硫氧化菌和硫酸盐还原菌)种群多样性、功能基因、代谢途径、硫氧化/硫酸盐还原速率及其对环境条件变化响应等方面的研究现状,并对未来湖泊微生物驱动的硫循环研究方向进行了展望。     

A thiotrophic microbial community in an acidic brine lake in Northern Chile

The endorheic basins of the Northern Chilean Altiplano contain saline lakes and salt flats. Two of the salt flats, Gorbea and Ignorado, have high acidic brines. The causes of the local acidity have been attributed to the occurrence of volcanic native sulfur, the release of sulfuric acid by oxidation, and the low buffering capacity of the rocks in the area. Understanding the microbial community composition and available energy in this pristine ecosystem is relevant in determining the origin of the acidity and in supporting the rationale of conservation policies. Besides, a comparison between similar systems in Australia highlights key microbial components and specific ones associated with geological settings and environmental conditions. Sediment and water samples from the Salar de Gorbea were collected, physicochemical parameters measured and geochemical and molecular biological analyses performed. A low diversity microbial community was observed in brines and sediments dominated by Actinobacteria, Algae, Firmicutes and Proteobacteria. Most of the constituent genera have been reported to be either sulfur oxidizing microorganisms or ones having the potential for sulfur oxidation given available genomic data and information drawn from the literature on cultured relatives. In addition, a link between sulfur oxidation and carbon fixation was observed. In contrast, to acid mine drainage communities, Gorbea microbial diversity is mainly supported by chemolithoheterotrophic, facultative chemolithoautotrophic and oligotrophic sulfur oxidizing populations indicating that microbial activity should also be considered as a causative agent of local acidity.     

燃料油的微生物脱氮

燃料油中含有一些有机氮化物,其含量虽不如硫化物多,但足以影响油品的颜色和抗氧化安定性,也能在催化裂化等原油精制过程中造成催化剂中毒,缩短催化剂的使用寿命。同时,有机氮化物具致癌、致突变性,在燃料油燃烧过程中转变为氮氧化物,形成酸雨污染环境。传统的加氢脱氮操作复杂,成本高,因此人们日益重视微生物脱氮。综述微生物脱除燃料油中芳香氮化合物的机理、调控及咔唑降解基因的分子遗传学研究进展,并对未来的研究方向提出了作者的见解。     

Influence of acid precipitation on bacterial populations in lakes

Relative abundance of total, respiring, aerobic heterotrophic, nitrogen cycle and sulfur cycle bacteria was measured in acid stressed and non-acid stressed hard water lakes. Data indicated that bacterial populations and densities were nearly an order of magnitude less in acid stressed waters than in non-acid stressed waters. Nitrifying bacteria and some sulfur cycle bacteria (Thiobacillus sp.) were very low or absent in acid stressed waters. Surface sediments of acid stressed lakes contained 3 to 4 times more organic matter than the amount found in the relatively more enriched lake. Methodology and data are presented.     

Occurrence of Conjugated Dienoic Fatty Acids in the Cellular Lipids of Pediococcus homari

Ninety-two thiolcarbamates with various substituents at the nitrogen and sulfur atoms, and their related compounds were synthesized, and their fungicidal activity against rice blast, Piricularia oryzae, and herbicidal activity against barnyardgrass, Echinochloa crus-galli, were determined in laboratory tests. The thiolcarbamate structure was necessary for the high fungicidal and herbicidal activities. The hydrophobicity of the substituents at the nitrogen atom was shown by the adaptive least-squares (ALS) method to be favorable to the fungicidal activity. The bulkier the substituents at the nitrogen atom, the less was the fungicidal activity. However, bulkiness of the substituents at the nitrogen and sulfur atoms was unfavorable to the herbicidal activity. The existence of a hydrogen atom at the nitrogen atom was favorable to fungicidal activity, but not to herbicidal activity. Correlation analyses were made to find compounds with both fungicidal and herbicidal activities against rice pests.     

Paleolirnnological records of carotenoids and carbonaceous particles in sediments of some lakes in Southern Alps

Stratigraphic analyses of organic carbon, organic nitrogen and algal and bacterial carotenoids in short cores of profundal sediments of four alpine lakes (Tovel, Leit, Paione superiore and Tom) were used to reconstruct their trophic history. In addition, depth distribution of carbonaceous particle concentrations provided information on lake contamination from atmospheric deposition. In three lakes (Tovel, Leit and Tom), sedimentary carotenoids unique to sulfur photosynthetic bacteria (okenone and isorenieratene) provide evidence of changes in the oxygen, light and sulfide conditions in the water column. All the lakes are oligotrophic or moderately productive, and the algal community is dominated by Chlorophyta, Pyrrhophyta and Cryptophyta. Cyanobacteria are rather poorly represented. The steep increase of carbonaceous particles in the uppermost sediment layers of all the lakes suggests that lake contamination by atmospheric transport of pollutants began in the 1940s to 1950s. These data, coupled with those from a parallel study on Chrysophycean scale-inferred pH, indicate recent acidification in those which are poorly buffered (Paione superiore and Leit).     

Recent carbonate sedimentation and brine evolution in the saline lake basins of the Cariboo Plateau,British Columbia,Canada

There are more than 100 closed, saline lakes in the semiarid, intermontane plateaus of British Columbia. They range from shallow perennial lakes to ephemeral playas. Most are groundwater-fed and lie within glaciofluvial deposits and till. Some have permanent salts. Where underlain by basalts, sodium carbonate brines predominate. Magnesium sulphate brines occur where catchments lie within Paleozoic sedimentary rocks, metasediments and basic volcanics. A few sodium sulphate brines are also present.A reconnaissance study of the sediments and mineralogy of 21 lake basins has shown that carbonates, including extensive magnesite and hydromagnesite deposits, and several occurrences of protodolomite, are widely precipitated in lake basins of each brine type. Analyses of stream, spring, ground and lake waters from the Cariboo Plateau region demonstrate that carbonate precipitation probably constitutes the major chemical divide responsible for producing the two dominant types of brine.     

Morphological study of Cyclotella choctawhatcheeana Prasad (Stephanodiscaceae) from a saline Mexican lake

Background

Extracellular dissolved DNA has been demonstrated to be present in many terrestrial and aquatic environments, actively secreted, or released by decaying cells. Free DNA has the genetic potential to be acquired by living competent cells by horizontal gene transfer mediated by natural transformation. The aim of this work is to study the persistence of extracellular DNA and its biological transforming activity in extreme environments like the deep hypersaline anoxic lakes of the Mediterranean Sea. The brine lakes are separated from the upper seawater by a steep chemocline inhabited by stratified prokaryotic networks, where cells sinking through the depth profile encounter increasing salinity values and osmotic stress.

Results

Seven strains belonging to different taxonomic groups isolated from the seawater-brine interface of four hypersaline lakes were grown at medium salinity and then incubated in the brines. The osmotic stress induced the death of all the inoculated cells in variable time periods, between 2 hours and 144 days, depending on the type of brine rather than the taxonomic group of the strains, i.e. Bacillaceae or gamma-proteobacteria. The Discovery lake confirmed to be the most aggressive environment toward living cells. In all the brines and in deep seawater dissolved plasmid DNA was substantially preserved for a period of 32 days in axenic conditions. L'Atalante and Bannock brines induced a decrease of the supercoiled form up to 70 and 40% respectively; in the other brines only minor changes in plasmid conformation were observed. Plasmid DNA after incubation in the brines maintained the capacity to transform naturally competent cells of Acinetobacter baylii strain BD413.

Conclusion

Free dissolved DNA is likely to be released by the lysis of cells induced by osmotic stress in the deep hypersaline anoxic lakes. Naked DNA was demonstrated to be preserved and biologically active in these extreme environments, and hence could constitute a genetic reservoir of traits acquirable by horizontal gene transfer.     

Water chemistry of high elevation Colorado wilderness lakes

High elevation alpine and subalpine Rocky Mountain lakes in Colorado and southeastern Wyoming were examined to determine regional variability in water chemistry and their sensitivity to atmospheric deposition. Acid neutralizing capacity, pH, conductivity and concentrations of major anions and cations were compared. Regional differences in water chemistry are evident. The south-eastern most lakes have significantly higher pH, conductivity, ANC, and sums of acid and base concentrations than lakes in the other regions of the state. In contrast the north-western most lakes are significantly more dilute than those from other regions. Despite these two regional differences, most regions are similar in having a wide range of variability in potential sensitivity of their lakes to acidification and nitrogen export. Many wilderness areas in western and eastern regions contains lakes that are extremely sensitive and other lakes not susceptible to deposition. Overall, 70% of the Colorado lakes are sensitive to acidification and 15% are extremely sensitive to acidification. All of the regions had lakes that are classified as susceptible or sensitive to acidification, with 12 of the 17 areas having all of their sampled lakes susceptible or sensitive. Generally NO concentration in surface waters decreased from mid-season to late season; yet a large number of the lakes export NO late in the season, suggesting nitrogen saturation. The results confirm the sensitivity of high elevation wilderness aquatic ecosystems in all regions of Colorado to acidification and nitrogen deposition.     

Binding of ligands to the catalytic zinc ion in horse liver alcohol dehydrogenase

The affinity of nitrogen and sulfur ligands for the catalytic zinc ion in horse liver alcohol dehydrogenase has been investigated by their influence on the affinity labeling reaction with iodoacetate. All the nitrogen compounds including ammonia, a primary and a secondary amine, and heterocycles containing a pyridine-type nitrogen with the exception of 2,2-dipyridyl were found to activate the affinity labeling reaction. Activation results from inner-sphere ligand coordination to the catalytic zinc ion. Closely related pyridine compounds gave a regular increase in affinity for the enzyme with increasing basicity, as expected for coordination to a metal ion. The sulfur compounds penicillamine and mercaptoethanol also activated the affinity labeling reaction, but dimercaptopropanol bound very tightly as a bidentate inhibited the reaction. The anions hydrosulfide, diethyldithiocarbamate, and cyanide coordinated to the catalytic zinc ion, whereas azide, thiocyanate, tetrazole, and iodide complexed the anion-binding site. The anionic metal ligands increased the rate of inactivation of the enzyme with iodoacetamide by binding to the catalytic zinc ion, while the binding of iodoacetate to the anion-binding site was prevented.     

Recent developments on biological nutrient removal processes for wastewater treatment

The need for preserving the environment is tightening regulations limiting the discharge of contaminants into water bodies. Nowadays most of the effort is done on the removal of more specific contaminants such as nutrients (N and P) and sulfurous compounds since they are becoming of great concern due to its impact on the quality of water bodies. There have been two recent discoveries of microbial conversions of nitrogenous compounds. One consisting on the capability of ammonia oxidizers of denitrify under certain conditions resulting in a new one-step method for the removal of N-compounds. The second has been named the ANAMMOX process, wherein ammonium is oxidized to dinitrogen gas with nitrite as the electron acceptor. Other developments consist of operational strategies aiming at obtaining the highest efficiency at removing nitrogen at lowest cost. One strategy consists of the partial nitrification to nitrite (only successful in the SHARON process) and subsequently either the heterotrophic denitrification of nitrites or its autotrophic reduction by ANAMMOX microorganisms. Another strategy consists of the coexistence of nitrifiers and denitrifiers in the same reactor by implementing high frequency oscillations on the oxygen level.The recent developments on biological phosphorous removal are based on the capacity of some denitrifying microorganisms to store ortho-phosphate intracellular as poly-phosphate in the presence of nitrate. These microorganisms store substrate (PHB) anaerobically which is further oxidized when nitrate is present. By extracting excess sludge from the anoxic phase, phosphate is removed from the system. Removing phosphate using nitrate instead of oxygen has the advantage of saving energy (oxygen input) and using less organic carbon.The microbial conversions of sulfurous compounds involve the metabolism of several different specific groups of bacteria such as sulfate reducing bacteria, sulfur and sulfide oxidizing bacteria, and phototrophic sulfur bacteria. Some of these microorganisms can simultaneously use nitrate, what has been reported as autotrophic denitrification by sulfur and sulfide oxidizing microorganisms. More recently, the anaerobic treatment of an industrial wastewater rich in organic matter, nitrogen and sulfate, reported a singular evolution of N and S compounds that initially was hypothesized as SURAMOX (SUlfate Reduction and AMmonia OXidation). The process could not have been verified nor reproduced and further investigations on the proposed SURAMOX mechanism have given no additional insights to those initial observations.     

Biotechnology in the petroleum industry: An overview

A significant quantum of crude oil is trapped in reservoirs and often unrecoverable by conventional oil recovery methods. Further downstream, the petroleum industry is facing challenges to remove sulfur, metal, nitrogen as well as undesirable organic compounds from the crude.Conventional secondary recovery methods such as water and gas injections helped to increase the productivity of the well, while chemical and physical refinery processes such as hydrodesulfurization, desalting, and high-pressure high-temperature hydrotreating remove most inorganic impurities. The increasing demand for oil in the world coupled with very stringent environmental laws piled economical and technical pressure upon the refinery industry to further improve crude oil recovery as well as reduce sulfur, metal and nitrogen concentration to the low ppm levels.In the search for economical and environmentally friendly solutions, growing attention has been given to biotechnology such as the use of microbial enhanced oil recovery (MEOR). MEOR is an alternate recovery method that uses microorganisms and their metabolic products. In addition, the emerging field of crude oil refining and associated industrial processes such as biodesulfurization, biodemetallation, biodenitrogenation and biotransformation are also covered.This review aims to provide an overview on MEOR and biorefining relevant to the petroleum industry and highlights challenges that need to be overcome to become commercially successful. Literature pertaining to laboratory experiments, field trials and patents are included in view of industrial applications and further developments.     

True marine and halophilic anoxygenic phototrophic bacteria

Anoxygenic phototrophic bacteria are widely distributed in marine sediments and shallow waters of the coastal zone, where they often form intensely colored mass developments. The phototrophic bacteria have adapted to the whole spectrum of salt concentrations, from freshwater to saturated brines, and it is apparent that individual species have adapted well to particular habitats and mineral salts compositions, both qualitatively and quantitatively. This adaptation is reflected not only in the demand for defined ranges of salt concentrations, but also in the phylogenetic relationships of these bacteria, as established by 16S rDNA sequences. Major phylogenetic branches of purple sulfur bacteria are represented by: (1) marine and extremely halophilic Ectothiorhodospiraceae, (2) truly marine and halophilic Chromatiaceae and (3) freshwater Chromatiaceae, some of which are tolerant to low salt concentrations and are successful competitors in brackish and marine habitats. Quite similarly, salt-dependent green sulfur bacteria form distinct phylogenetic lines. In addition, also among the phototrophic alpha-Proteobacteria (purple nonsulfur bacteria), distinct phylogenetic lines of salt-dependent species are recognized. Available data give rise to the assumption that salt concentrations of natural habitats are an important selective factor that determines the development of a selected range of phototrophic bacteria in an exclusive way. As a consequence, the salt responses of these bacteria are reflected in their phylogenetic relationships.     

Biotransformation of aromatic compounds from wastewaters containing N and/or S, by nitrification/denitrification: a review

This review presents progress made over the last decades in the understanding of the metabolic capabilities of nitrifying and denitrifying microorganisms for the biotransformation of nitrogen, sulfur, and carbon compounds present in wastewaters. There are nowadays still many discoveries to be made about the metabolism, phylogeny and ecological behavior of bacteria that play an important role in the nitrogen cycle. The interest of the scientific community in the biological nitrogen cycle is at present very high, because it can be linked to either sulfur or carbon cycles. The connection of biological cycles is of the utmost technological relevance as it has allowed the simultaneous elimination of reduced sulfur and phenolic compounds under nitrifying or denitrifying conditions. The environmental factors affecting the nitrification and denitrification biological processes are described in this review.     

Yeast genes involved in sulfur and nitrogen metabolism affect the production of volatile thiols from Sauvignon Blanc musts

Two volatile thiols, 3-mercaptohexan-1-ol (3MH), and 3-mercaptohexyl-acetate (3MHA), reminiscent of grapefruit and passion fruit respectively, are critical varietal aroma compounds in Sauvignon Blanc (SB) wines. These aromatic thiols are not present in the grape juice but are synthesized and released by the yeast during alcoholic fermentation. Single deletion mutants of 67 candidate genes in a laboratory strain of Saccharomyces cerevisiae were screened using gas chromatography mass spectrometry for their thiol production after fermentation of SB grape juice. None of the deletions abolished production of the two volatile thiols. However, deletion of 17 genes caused increases or decreases in production by as much as twofold. These 17 genes, mostly related to sulfur and nitrogen metabolism in yeast, may act by altering the regulation of the pathway(s) of thiol production or altering substrate supply. Deleting subsets of these genes in a wine yeast strain gave similar results to the laboratory strain for sulfur pathway genes but showed strain differences for genes involved in nitrogen metabolism. The addition of two nitrogen sources, urea and di-ammonium phosphate, as well as two sulfur compounds, cysteine and S-ethyl-L-cysteine, increased 3MH and 3MHA concentrations in the final wines. Collectively these results suggest that sulfur and nitrogen metabolism are important in regulating the synthesis of 3MH and 3MHA during yeast fermentation of grape juice.     

The fate of minor alkali elements in the chemical evolution of salt lakes

Alkaline earth elements and alkali metals (Mg, Ca, Na and K) play an important role in the geochemical evolution of saline lakes as the final brine type is defined by the abundance of these elements. The role of major ions in brine evolution has been studied in great detail, but little has been done to investigate the behaviour of minor alkali elements in these systems despite their similar chemical affinities to the major cations. We have examined three major anionic brine types, chloride, sulphate, and bicarbonate-carbonate, in fifteen lakes in North America and Antarctica to determine the geochemical behaviour of lithium, rubidium, strontium, and barium. Lithium and rubidium are largely conservative in all water types, and their concentrations are the result of long-term solute input and concentration through evaporation and/or sublimation. Strontium and barium behaviours vary with anionic brine type. Strontium can be removed in sulphate and carbonate-rich lakes by the precipitation of carbonate minerals. Barium may be removed in chloride and sulphate brines by either the precipitation of barite and perhaps biological uptake.     

Saline systems of the Great Plains of western Canada: an overview of the limnogeology and paleolimnology

In much of the northern Great Plains, saline and hypersaline lacustrine brines are the only surface waters present. As a group, the lakes of this region are unique: there is no other area in the world that can match the concentration and diversity of saline lake environments exhibited in the prairie region of Canada and northern United States. The immense number of individual salt lakes and saline wetlands in this region of North America is staggering. Estimates vary from about one million to greater than 10 million, with densities in some areas being as high as 120 lakes/km². Despite over a century of scientific investigation of these salt lakes, we have only in the last twenty years advanced far enough to appreciate the wide spectrum of lake types, water chemistries, and limnological processes that are operating in the modern settings. Hydrochemical data are available for about 800 of the lake brines in the region. Composition, textural, and geochemical information on the modern bottom sediments has been collected for just over 150 of these lakes. Characterization of the biological and ecological features of these lakes is based on even fewer investigations, and the stratigraphic records of only twenty basins have been examined. The lake waters show a considerable range in ionic composition and concentration. Early investigators, concentrating on the most saline brines, emphasized a strong predominance of Na⁺ and SO₄ ^-2 in the lakes. It is now realized, however, that not only is there a complete spectrum of salinities from less than 1 ppt TDS to nearly 400 ppt, but also virtually every water chemistry type is represented in lakes of the region. With such a vast array of compositions, it is difficult to generalize. Nonetheless, the paucity of Cl-rich lakes makes the northern Great Plains basins somewhat unusual compared with salt lakes in many other areas of the world (e.g., Australia, western United States). Compilations of the lake water chemistries show distinct spatial trends and regional variations controlled by groundwater input, climate, and geomorphology. Short-term temporal variations in the brine composition, which can have significant effects on the composition of the modern sediments, have also been well documented in several individual basins. From a sedimentological and mineralogical perspective, the wide range of water chemistries exhibited by the lakes leads to an unusually large diversity of modern sediment composition. Over 40 species of endogenic precipitates and authigenic minerals have been identified in the lacustrine sediments. The most common non-detrital components of the modern sediments include: calcium and calcium-magnesium carbonates (magnesian calcite, aragonite, dolomite), and sodium, magnesium, and sodium-magnesium sulfates (mirabilite, thenardite, bloedite, epsomite). Many of the basins whose brines have very high Mg/Ca ratios also have hydromagnesite, magnesite, and nesquehonite. Unlike salt lakes in many other areas of the world, halite, gypsum, and calcite are relatively rare endogenic precipitates in the Great Plains lakes. The detrital fraction of the lacustrine sediments is normally dominated by clay minerals, carbonate minerals, quartz, and feldspars. Sediment accumulation in these salt lakes is controlled and modified by a wide variety of physical, chemical, and biological processes. Although the details of these modern sedimentary processes can be exceedingly complex and difficult to discuss in isolation, in broad terms, the processes operating in the salt lakes of the Great Plains are ultimately controlled by three basic factors or conditions of the basin: (a) basin morphology; (b) basin hydrology; and (c) water salinity and composition. Combinations of these parameters interact to control nearly all aspects of modern sedimentation in these salt lakes and give rise to four 'end member' types of modern saline lacustrine settings in the Great Plains: (a) clastics-dominated playas; (b) salt-dominated playas; (c) deep water, non-stratified lakes; and (d) deep water, "permanently" stratified lakes.     

虫害诱导挥发物的生态调控功能

虫害诱导挥发物（herbivore-induced plant volatiles, HIPVs）是植物受害虫胁迫后释放的挥发性物质,是植物与周围环境进行信息交流的媒介。环境中的天敌、害虫和植物通过感知HIPVs所携带的信息,对各自的行为或生理生化反应做出相应的调整。介绍了挥发物的种类及主要的生物合成途径,概括了影响天敌依据HIPVs搜寻寄主和猎物的主要因素。综述了这类挥发性物质对植食性昆虫寄主选择或产卵行为的影响,介绍了植物地上部分和地下部分受害后对彼此间接防御的影响,讨论了多种害虫加害同种植物后对天敌搜寻猎物或寄主行为的影响。另外,作为损伤信号,HIPVs还能诱导同株植物未受害部位和邻近植株的防御反应。最后,对HIPVs在害虫防治中的应用现状及前景作了介绍和讨论。     

Concepts of sulfur,carbon, and nitrogen transformations in soil: evaluation by simulation modeling

The dynamics of sulfur immobilization and mineralization in soil were simulated to test hypotheses about their regulation by the availability of carbon and nitrogen. The concept of chemical bond classes was incorporated into the model to account for variation in composition of carbon, nitrogen, and sulfur compounds. Microbial biomass was differentiated into bacteria and fungi, and the element ratios of both groups were assumed to vary. Organic residues were divided between dead microbes plus microbial products, and the more labile fraction of stabilized soil organic matter. Concepts and hypotheses in the model were tested by applying it to data on microbial biomass, sulfate, nitrate, and CO₂ evolution obtained in laboratory incubations of two soils amended with sulfate and cellulose. An important mechanism of regulation tested in the model was the stimulation of sulfohydrolase enzyme production depending on sulfur stress in microbial biomass. The hypothesis that excess sulfate is stored as ester sulfate was supported by model dynamics.     

The Formation of Alkyl-p-benzoquinones and Catechols through Base-catalyzed Degradation of Sucrose

The cooked odor concentrate of boiled Antarctic krills was obtained by simultaneous distillation and extraction, in a modified Likens and Nickerson’s apparatus. The sulfur containing fraction was successively separated with preparative gas chromatography. Organoleptically, this fraction seemed to play a significant role in the characteristic odor of cooked krills. The fraction was analyzed by a gas Chromatograph equipped with FPD and FTD, and by GC-MS. Seven sulfur containing compounds and four containing both sulfur and nitrogen compounds were newly identified in the cooked odor of Antarctic krills. These compounds seem to be important contributors to the odor of cooked krills.