Tissue microarrays as a platform for proteomic investigation

Tissue microarrays have become an essential tool in translational pathology. They are used to confirm results from other experimental platforms, such as expression microarrays, as well as a primary tool to explore the expression profile of proteins by immunohistochemical analysis. Tissue microarrays are routinely used molecular epidemiology, drug development and determining the diagnostic, prognostic and predictive value of new biomarkers. By applying traditional protein based assays, as well as novel assays to the platform, tissue microarrays have gained a new utility as a proteomic tool for both basic science as well as clinical investigation. This article will explore the new approaches that are being applied to tissue microarrays to, characterize the human proteome, and new technologies that allow tissue microarrays to function as a protein array. The U.S. Government's right to retain a non-exclusive, royalty-free license in and to any copyright is acknowledged     

Mapping quantitative trait loci for traits defined as ratios

Many traits are defined as ratios of two quantitative traits. Methods of QTL mapping for regular quantitative traits are not optimal when applied to ratios due to lack of normality for traits defined as ratios. We develop a new method of QTL mapping for traits defined as ratios. The new method uses a special linear combination of the two component traits, and thus takes advantage of the normal property of the new variable. Simulation study shows that the new method can substantially increase the statistical power of QTL detection relative to the method which treats ratios as regular quantitative traits. The new method also outperforms the method that uses Box-Cox transformed ratio as the phenotype. A real example of QTL mapping for relative growth rate in soybean demonstrates that the new method can detect more QTL than existing methods of QTL mapping for traits defined as ratios.     

Diploidy, evolution and sex

A new gene for a new purpose may be created by mutation of a pre-existing gene. But if that original gene is still required for its original purpose, and is to be retained side by side with the new, a spare copy is needed initially as raw material for the innovation. Thus in haploids the original gene must be duplicated before it is modified. But in diploids a spare copy of every gene is always available, and a mutant allele serving a new purpose can be easily established and maintained by heterosis in parallel with the old allele. Subsequent gene duplication will lead, via crossing-over, to insertion of the new gene in tandem with the old, as a permanent addition to the genome. Calculations show that diploids can thus enlarge their genomes with new genes for new purposes much more readily than haploids; in particular, they can more easily evolve the complex gene control systems characteristic of differentiated multicellular organisms. Sexual reproduction preserves diploidy, and so can be seen as the basis of these richer possibilities for evolutionary innovation.     

The potential of South African plants in the development of new food and beverage products

A review is presented of the history and recent trends in the exploration and development of food plants in southern Africa. The opportunities for developing new crops and new products for local and international markets are discussed. More than 120 species with potential as new food and beverage products (including functional foods, herbal teas and new flavours) are listed and a subjective rating of the commercial potential is provided for each of them. Some noteworthy examples are discussed and illustrated, including several indigenous fruits and vegetables that are as yet poorly known. There is a growing awareness of the importance of indigenous plants in new product development and numerous new products are already being developed. Basic research in botany (to guide genotype selection), horticulture (to develop new crops), food science (to focus on nutritional analyses) and marketing (to understand and develop new marketing approaches) is mentioned as important priorities.     

The dendritic architecture of motoneurons: A case study

Within a historical perspective, different experimental approaches are reviewed that have used new tools and new concepts to gain an insight into the functional significance of the architecture of dendritic arborizations of nerve cells. A single type of neurons, the motoneurons, were taken as a case study to show how different fields, such as histology, morphology, electrophysiology, and neuronal modeling, have developed in parallel and accumulated a wealth of new data, and how consideration of these new informations led to new working hypotheses. Matching geometrical and electrical parameters of dendrites is critically analyzed as a basis for understanding of the dendritic functions.     

An annotated list of the publications of Rupert C. Barneby

Rupert Barneby had 263 publications (two of which were published with two volumes each) during his career (including 56 book reviews), and additionally published new taxa and combinations in 16 publications by B. A. Krukoff, S. L. Welsh, and A. Lourteig. In total, these publications amount to 7676 pages. Each entry was examined, was dated as accurately as possible, and was annotated with any new nomenclauture presented in the publication. Barneby published 4 new subtribes within the legumes, 9 new genera of legumes (one based on a new combination) and 6 new genera of Menispermaceae, 621 new species (including 6 new nothospecies), 16 new subspecies, 355 new varieties, and 1 new form. Additionally, he published 238 new infrageneric taxa (subgenera, sections, or subsections). he made numerous new combinations (including nomina nova) at the infrageneric level (169), the species level (582), the subspecific level (27), and the varietal level (533), as well as a single combination at the form level.     

New Discoveries of the Genus Hippophae L. (Elaeagnaceae)

This paper represents new discoveries of the genus Hippophae L, including two new sections: i. e. Sect. I. Hippophae and Sect. II. Gyantsenses Lian, a new rank species H. gyantsensis (Rousi) Lian, as well as a new record of H. rhamnoides L. subsp. turkestanica Rousi in Gansu. Besides, a key to the sections and species is provided and an account of the new classification scheme on the genus is given.     

Strategies for isolation of in vivo expressed genes from bacteria

The discovery and characterization of genes specifically induced in vivo upon infection and/or at a specific stage of the infection will be the next phase in studying bacterial virulence at the molecular level. Genes isolated are most likely to encode virulence-associated factors or products essential for survival, bacterial cell division and multiplication in situ. Identification of these genes is expected to provide new means to prevent infection, new targets for, antimicrobial therapy, as well as new insights into the infection process. Analysis of genes and their sequences initially discovered as in vivo induced may now be revealed by functional and comparative genomics. The new field of virulence genomics and their clustering as pathogenicity islands makes feasible their in-depth analysis. Application of new technologies such as in vivo expression technologies, signature-tagged mutagenesis, differential fluorescence induction, differential display using polymerase chain reaction coupled to bacterial genomics is expected to provide a strong basis for studying in vivo induced genes, and a better understanding of bacterial pathogenicity in vivo. This review presents technologies for characterization of genes expressed in vivo.     

Plant biocommunicators: their phytotoxicity, degradation studies and potential use as herbicide models

The development of new bioactive molecules with potential application in pharmacology and agriculture by using natural products as templates has been a widely used approach in the recent years. Focusing our attention in phytochemicals with potential application in agriculture, allelochemicals (natural plant toxins) have been deeply researched with the main purpose of finding phytotoxic substances to use as new herbicidal templates. The development of new analytical methodologies, improved bioassay techniques and a complete understanding of the allelopathic phenomenon will provide new tools for natural herbicide models development, in the context of the new approaches to integrated pest management. A deeper knowledge of the release and assimilation of allelochemicals, and the degradation phenomena associated to them will aid to discover new chemical structures with potential utility, in addition to a better understanding on the ecological interactions mediated by phytochemicals. The research on these topics, made with promising allelochemicals such as benzoxazinones and their degradation derivatives, the improvements on analytical design, the degradation mechanisms elucidation and the novel bioassay techniques recently developed, are revised herein.     

New strategies for combating multidrug-resistant bacteria

Antibiotic resistance is a problem that continues to challenge the healthcare sector. In particular, multidrug resistance is now common in familiar pathogens such as Staphylococcus aureus and Mycobacterium tuberculosis, as well as emerging pathogens such as Acinetobacter baumannii. New antibiotics and new therapeutic strategies are needed to address this challenge. Advances in identifying new sources of antibiotic natural products and expanding antibiotic chemical diversity are providing chemical leads for new drugs. Inhibitors of resistance mechanisms and microbial virulence are orthogonal strategies that are also generating new chemicals that can extend the life of existing antibiotics. This new chemistry, coupled with a growing understanding of the mechanisms, origins and distribution of antibiotic resistance, position us to tackle the challenges of antibiotic resistance in the 21st century.     

The formation of the American Society of Clinical Oncology and the development of a medical specialty, 1964-1973

In April 1964, seven physicians met to discuss the formation of a new medical society for clinicians interested in the management of patients with cancer. Chemical warfare research during World War II had led to the advent of chemotherapeutic agents, a new, systemic approach toward cancer treatment. While skeptics questioned the benefits of chemotherapy, some internists viewed these drugs as promising new tools. Founders of the American Society of Clinical Oncology built their organization upon the importance, despite potential dangers, of utilizing chemotherapy as an essential component of cancer treatment, and positioned themselves as best qualified to manage the care of patients with cancer. The establishment of a new professional organization helped to anchor medical oncology as a distinct field during a time of increasing medical specialization in the United States. This essay examines the Society's early history within a broader context of the development of new chemical agents and cooperative groups, the formation of a new subspecialty, and increasing federal involvement in health care policy and funding, and describes the struggle of medical oncologists to solidify their authority over clinical cancer research and patient care.     

POSTNATAL REPRODUCTIVE AUTONOMY: PROMOTING RELATIONAL AUTONOMY AND SELF-TRUST IN NEW PARENTS

New parents suddenly come face to face with myriad issues that demand careful attention but appear in a context unlikely to provide opportunities for extended or clear-headed critical reflection, whether at home with a new baby or in the neonatal intensive care unit. As such, their capacity for autonomy may be compromised. Attending to new parental autonomy as an extension of reproductive autonomy, and as a complicated phenomenon in its own right rather than simply as a matter to be balanced against other autonomy rights, can help us to see how new parents might be aided in their quest for competency and good decision making. In this paper I show how a relational view of autonomy – attentive to the coercive effects of oppressive social norms and to the importance of developing autonomy competency, especially as related to self-trust – can improve our understanding of the situation of new parents and signal ways to cultivate and to better respect their autonomy.     

The challenge of including social and ethical aspects in the development of nanobiotechnology

Nanotechnology as an enabling technology for many future medical applications touches on issues such as sensitivity of genetic information, the gap between diagnosis and therapy, health care resources and tensions between holistic and functional medicine. On the other hand nanotechnology will add a new dimension to the bio (human) and non-bio (machine) interface such as brain chips or implants, which eventually might raise new ethical issues specific to NanoMedicine. This requires careful analysis of ethical aspect in view of existing standards and regulations by ethics committees at the European scale. At the same time new nanomedical inventions have to be evaluated for new ethical aspects by Ethical, Legal and Social Aspects — specialists. The most crucial point in this regard is an early proactive analysis of new technological developments to identify and discuss possible issues as soon as possible. This requires a close collaboration and co-learning of technology developers and ethics specialists assisted by communication experts to ensure open and efficient information of the public about ethical aspects (old or new) related to nanomedicine. This co-evolution will ensure a socially and ethically accepted development of innovative diagnostic and therapeutic tools in NanoMedicine.     

New Interest in Wild Forest Products in Europe as an Expression of Biocultural Dynamics

In Europe, interest in wild forest products is increasing. Such products may be interpreted in a biological sense as deriving from autonomously growing forest species or in a biocultural sense as reflecting dynamics in human living with biodiversity through re-wilding of earlier domesticated species. In this article I elaborate the idea that the new interests reflect biocultural dynamics. First, I identify these dynamics as involving both domestication and re-wilding and characterize these processes as involving biological, environmental, and cultural dimensions. Next, I present a comparative review of two approaches to re-wilding forest production in the Netherlands: meat production from new types of natural grazing systems, and food production from plants re-introduced to the wild. The first approach is based on the stimulation of naturally occurring ecological processes and the second on the stimulation of new forms of experiencing bio-cultural heritage. The examples demonstrate that the new interests in wild forest products involve both a return to earlier stages of domestication in an ecological sense and a new phase of acculturation to evolving socio-cultural conditions.     

‘Débrouillez-Vous’: Women's Work,Transactional Sex,and the Politics of Social Networks

Women in Kinshasa, Democratic Republic of Congo are increasingly entering new professions partly due to an increase in higher education levels. In so doing, and as they become more visible in political and economic spheres, women are subjected to new forms of moral suspicion. While women have historically maintained a strong presence in the informal sector, such as commerce, new urban modes of employment dictate new kinds of visibility. It is within this context that notions of femininity and female virtue in Kinshasa continue to be redefined. This article explores several modes of employment for women, such as money-changing, journalism, and politics as they relate to local concepts of encadrement (supervision) and débrouillardisme (resourcefulness). Further, it also examines the threat that a woman's social network outside of her kin poses to men, as well as how women's participation in the economic sphere can motivate distrust between the genders.     

Biomimetics: From Bioinformatics to Rational Design of Dendrimers as Gene Carriers

Biomimetics, or the use of principles of Nature for developing new materials, is a paradigm that could help Nanomedicine tremendously. One of the current challenges in Nanomedicine is the rational design of new efficient and safer gene carriers. Poly(amidoamine) (PAMAM) dendrimers are a well-known class of nanoparticles, extensively used as non-viral nucleic acid carriers, due to their positively charged end-groups. Yet, there are still several aspects that can be improved for their successful application in in vitro and in vivo systems, including their affinity for nucleic acids as well as lowering their cytotoxicity. In the search of new functional groups that could be used as new dendrimer-reactive groups, we followed a biomimetic approach to determine the amino acids with highest prevalence in protein-DNA interactions. Then we introduced them individually as terminal groups of dendrimers, generating a new class of nanoparticles. Molecular dynamics studies of two systems: PAMAM-Arg and PAMAM-Lys were also performed in order to describe the formation of complexes with DNA. Results confirmed that the introduction of amino acids as terminal groups in a dendrimer increases their affinity for DNA and the interactions in the complexes were characterized at atomic level. We end up by briefly discussing additional modifications that can be made to PAMAM dendrimers to turned them into promising new gene carriers.     

New herbaceous and woody species of Euphorbia (Euphorbiaceae) from Somalia

A small prostrate herb, Euphorbia salsicola , a woody shrublet with curious tubers, E. scatorhiza , and a small tree with decorative bracts, E. thulinii , are described as new species of Euphorbia. Within subgenus Lyciopsis the morphological variability of E. cuneata in Somalia is discussed and a new subspecies cretacea is described. E. gypsophila , a closely related but distinct species found only on gypsum is also described as new, together with E. dunensis , a shrublet from the coastal dunes and E. tripartita , another shrub in the same subgenus related to E. matabelensis. As far as present records show, all the new taxa are endemic in Somalia.     

Turning a Drug Target into a Drug Candidate: A New Paradigm for Neurological Drug Discovery?

The conventional paradigm for developing new treatments for disease mainly involves either the discovery of new drug targets, or finding new, improved drugs for old targets. However, an ion channel found only in invertebrates offers the potential of a completely new paradigm in which an established drug target can be re-engineered to serve as a new candidate therapeutic agent. The L-glutamate-gated chloride channels (GluCls) of invertebrates are absent from vertebrate genomes, offering the opportunity to introduce this exogenous, inhibitory, L-glutamate receptor into vertebrate neuronal circuits either as a tool with which to study neural networks, or a candidate therapy. Epileptic seizures can involve L-glutamate-induced hyper-excitation and toxicity. Variant GluCls, with their inhibitory responses to L-glutamate, when engineered into human neurons, might counter the excitotoxic effects of excess L-glutamate. In reviewing recent studies on model organisms, it appears that this approach might offer a new paradigm for the development of candidate therapeutics for epilepsy.     

How symbiogenic is evolution?

When new entities are formed by the integration of individual organisms, these new entities possess characteristics which go beyond the sum of the individual properties of each element of the association, resulting in the development of new attributes and capacities as an integrated whole. In this process, these new entities also agglutinate and dynamize synergies not present in the individual organisms. In this sense, evolution is a dynamic process that evolves not in the way of perfection or progress, but in the way of adaptation to new conditions. Symbiogenesis, as an evolutionary mechanism, allows a coherent conceptual rupture with some evolutionary ideas of the past and, at the same time, shows and builds a new approach to life, based on solid evolutionary ideas, expanding evolution to an adequate level of integration with the more recent data in biology. These ideas and concepts should be integrated in a post-neodarwinian approach to evolution that needs further attention from the scientific community. The development of a Symbiogenic Theory of Evolution could contribute toward a new epistemological approach of the symbiotic phenomenon in the evolutionary context. This, in our point of view, could be the beginning of a new paradigm in science that rests almost unexplored.