The architecture of the shoulder in some mammals

A series of nine features of the shoulder girdle, chosen as having functional significance in relation to the movements of the shoulder in arboreal locomotion, have been studied in 1188 specimens of 194 genera of mammals. The features were defined metrically and examined by means of a multivariate statistical technique: viz. canonical analysis. The study has shown that those mammals which are nonarboreal differ considerably among themselves and form the arboreal forms. But the myriad shapes of the shoulder girdle in a wide range of mammals (e.g. some marsupials, edentates, rodents, carnivores and primates) which climb or forage in trees, can be summarized mathematically by a very small number of similar canonical variates. This information correlates well with that of a previous series of studies carried out on the primates alone. The biological information that was postulated as being reflected by the individual canonical variates for the primates is also apparent for the arboreal mammals. The different variates separate the forms in ways which are consonant with what is known about the function of the shoulder in locomotion. Aspects of the shape of the shoulder defined by the analysis appear to be discernible from an examination of the contribution of the original variables to each individual canonical variate. This seems to confirm that the shape of the shoulder girdle within a very wide range of mammals is limited by a very small number of underlying factors of biological significance. One interpretation of the results suggests that the genetic model of the mammalian shoulder may have been sufficiently fixed at an early stage in the evolution of the class as to place considerable constraints upon the subsequent evolution of the shoulder in the different Orders.     

On the diversity of sperm histones in the vertebrates: IV. Cytochemical and amino acid analysis in Anura

The variability of sperm histones in frogs has been studied by cytochemical and amino acid analyses. Cytochemically, Rana sperm proteins fall into Bloch's ('69, '76) type 4 somatic-like histone category, while Xenopus and Bufo have type 3 intermediate sperm histones. Extractability in 5% trichloroacetic acid (TCA) at different temperatures splits this type 3 category into two groups: type 3B intermediate sperm histones of Bufo are extractable at 85-90 degrees C, while Xenopus intermediate type 3A sperm histones require temperatures of 95-100 degrees C for extraction. Amino acid analysis confirms that Rana sperm histones are of the nucleosomal type, with a testis-specific, very lysine-rich H1 histone. The sperm protein in Bufo is richer in arginine than the proteins in Xenopus. Both of these genera contain lysine and histidine as well as arginine in their sperm proteins. These results confirm earlier electrophoretic data (Kasinsky et al., '78) and indicate that sperm histones in the order Anura can vary markedly between different genera.     

Oxidative remodeling of chromoplast carotenoids: identification of the carotenoid dioxygenase CsCCD and CsZCD genes involved in Crocus secondary metabolite biogenesis

The accumulation of three major carotenoid derivatives-crocetin glycosides, picrocrocin, and safranal-is in large part responsible for the color, bitter taste, and aroma of saffron, which is obtained from the dried styles of Crocus. We have identified and functionally characterized the Crocus zeaxanthin 7,8(7',8')-cleavage dioxygenase gene (CsZCD), which codes for a chromoplast enzyme that initiates the biogenesis of these derivatives. The Crocus carotenoid 9,10(9',10')-cleavage dioxygenase gene (CsCCD) also has been cloned, and the comparison of substrate specificities between these two enzymes has shown that the CsCCD enzyme acts on a broader range of precursors. CsZCD expression is restricted to the style branch tissues and is enhanced under dehydration stress, whereas CsCCD is expressed constitutively in flower and leaf tissues irrespective of dehydration stress. Electron microscopy revealed that the accumulation of saffron metabolites is accompanied by the differentiation of amyloplasts and chromoplasts and by interactions between chromoplasts and the vacuole. Our data suggest that a stepwise sequence exists that involves the oxidative cleavage of zeaxanthin in chromoplasts followed by the sequestration of modified water-soluble derivatives into the central vacuole.     

cis-diamminedichloroplatinum(II) induced distortion of a single and double stranded deoxydecanucleosidenonaphosphate studied by nuclear magnetic resonance

The structural distortion of a single- and a double-stranded decadeoxynucleotide upon binding of cis-PtCl2(NH3)2 was studied by 1H-NMR. After selective platination of d(T-C-T-C-G-G-T-C-T-C) (I) at the central d(-GpG-) site (resulting in I-Pt), several non-exchangeable base protons as well as H1', H2', H2" and H3' protons could be assigned by means of conventional NMR double-resonance techniques. Addition of the complementary decamer strand to I and I-Pt yielded the double-stranded III and III-Pt, respectively. All non-exchangeable base, H1', and most of the H2' and H2" protons in the two double stranded compounds could be assigned using 2D-chemical shift correlation (COSY) and nuclear Overhauser enhancement (NOESY) techniques. The double stranded compound III appears to adopt a B-DNA like structure. Comparison of NOEs and proton-proton coupling constants in the d(-GpG-).cisPt part in I-Pt and III-Pt reveals that their structure displays large similarity. Significant chemical shift changes (i.e. larger than 0.1 ppm) between III and III-Pt are restricted to the central four base pairs. It follows that the outer three base pairs, located on either side of the central four base pairs in III-Pt are likely to adopt a regular B-DNA type helix. The observed large upfield and downfield chemical shifts in the d(-CpGpG-) part of III with respect to III-Pt can be rationalized by describing the distortion of the double helix as a kink. A discussion of the observed physical effects upon platination of a double-stranded oligonucleotide is presented.     

The D' measure of overall gametic disequilibrium between pairs of multiallelic loci

Abstract The D ' coefficient is one of the most commonly used measures of the extent of gametic disequilibrium between multiallelic loci. It has been suggested that the range of the D ' measure of overall disequilibrium between pairs of multiallelic loci depends on allele frequencies, except under some very restricted conditions. Nevertheless, the problem of dependence of the range of D ' has not been characterized under a wide set of possible polymorphisms. Evaluation of the utility of D ' as a measure of the strength of overall disequilibrium between all possible pairs of alleles at two multiallelic loci requires better knowledge of its range than is currently available. In this work, the conditions of polymorphism under which the range of D ' is frequency independent are given. It is found that the range of D ' is more often independent of allelic frequencies than is commonly thought. Furthermore, the range of D ' undergoes only small fluctuations as a function of the polymorphisms at the loci. Numerical cases and microsatellite data from humans are used for illustration. These observations indicate that the D ' coefficient is a useful tool for the estimation and comparison of the extent of overall disequilibrium across pairs of multiallelic loci.     

Further morphometric studies of the ulna from the Omo Basin, Ethiopia.

A reanalysis of the L40-19 fossil ulna from the Omo Basin, Ethiopia is presented. Using covariance adjustment rather than ratios to correct metric data for variations due to body size, a comparative sample reflecting 21 contemporary Anthropoid taxa, and both distribution-free and multivariate statistical procedures, this study indicates that the earlier conclusion drawn by McHenry et al. ('76), viz., that the fossil is "unique" among Hominoids, is essentially correct. This study also concludes, however, that although the fossil is projected closer to Pan and Homo than to Pongo, the distances are considerably greater than found between behaviorally similar modern forms. Consequently, aside from assigning the fossil on morphometric grounds to the Hominoidea, little else can be said about its possible locomotor habits or its ancestry.     

Phylogenetic and geographic variation in host breadth and composition by herbivorous amphipods in the family Ampithoidae

Predicting the host range for herbivores has been a major aim of research into plant-herbivore interactions and an important model system for understanding the evolution of feeding specialization. Among many terrestrial insects, host range is strongly affected by herbivore phylogeny and long historical associations between particular herbivore and plant taxa. For small herbivores in marine environments, it is known that the evolution of host use is sculpted by several ecological factors (e.g., food quality, value as a refuge from predators, and abiotic forces), but the potential for phylogenetic constraints on host use remains largely unexplored. Here, we analyze reports of host use of herbivorous amphipods from the family Ampithoidae (102 amphipod species from 12 genera) to test the hypotheses that host breadth and composition vary among herbivore lineages, and to quantify the extent to which nonpolar secondary metabolites mediate these patterns. The family as a whole, and most individual species, are found on a wide variety of macroalgae and seagrasses. Despite this polyphagous host use, amphipod genera consistently differed in host range and composition. As an example, the genus Peramphithoe rarely use available macrophytes in the order Dictyotales (e.g., Dictyota) and as a consequence, display a more restricted host range than do other genera (e.g., Ampithoe, Cymadusa, or Exampithoe). The strong phylogenetic effect on host use was independent of the uneven distribution of host taxa among geographic regions. Algae that produced nonpolar secondary metabolites were colonized by higher numbers of amphipod species relative to chemically poor genera, consistent with the notion that secondary metabolites do not provide algae an escape from amphipod herbivory. In contrast to patterns described for some groups of phytophagous insects, marine amphipods that use chemically rich algae tended to have broader, not narrower, host ranges. This result suggests that an evolutionary advantage to metabolite tolerance in marine amphipods may be that it increases the availability of appropriate algal hosts (i.e., enlarges the resource base).     

The adaptive and classificatory significance of certain quantitative features of the forelimb in primates

Quantitative osteological features of the primate brachium and antebrachium can be defined in relation to functionally significant contrasts in the principal muscle blocks. Such features, as shown by univariate and multivariate statistical study of a total of 525 sets of arm bones from 39 primate genera, demonstrate a broad correlation with the extent to which the forelimb is subject to tensile forces during locomotion. Man, in different features, resembles contrasting groups of non-human Primates; in sum total of such characteristics, he is unique.
Other dimensional characters, defining more general features of the arm bones differentiate individually, but more especially in multivariate combination, between major taxonomic groups within both Prosimii and Anthropoidea.
In combination, the two groups of dimensions give a separation that is primarily taxonomic but which has a locomotor underlay.
When, in sum total, the dimensional characters of the arm are combined with those of the shoulder (where, as established in earlier work, the separation produced is almost exclusively locomotor), the initial division is in accordance with locomotor function of the forelimb—and especially the extent to which the limb is subjected to tensile forces. But there is a strong taxonomic underlay.
A method is thus provided for enquiry into both the taxonomic and functional significance of arm bones of fossil Primates.
The work, in addition to endorsing the classical concept of Man's retention of primitive mobility in the distal segments of his forelimb, also re-emphasizes his uniqueness through arm mobility being associated with shoulder action principally caudal and ventral to the joint.     

Competency for nonsense-mediated reduction in collagen X mRNA is specified by the 3' UTR and corresponds to the position of mutations in Schmid metaphyseal chondrodysplasia

Nonsense-mediated decay (NMD) is a eukaryotic cellular RNA surveillance and quality-control mechanism that degrades mRNA containing premature stop codons (nonsense mutations) that otherwise may exert a deleterious effect by the production of dysfunctional truncated proteins. Collagen X (COL10A1) nonsense mutations in Schmid-type metaphyseal chondrodysplasia are localized in a region toward the 3' end of the last exon (exon 3) and result in mRNA decay, in contrast to most other genes in which terminal-exon nonsense mutations are resistant to NMD. We introduce nonsense mutations into the mouse Col10a1 gene and express these in a hypertrophic-chondrocyte cell line to explore the mechanism of last-exon mRNA decay of Col10a1 and demonstrate that mRNA decay is spatially restricted to mutations occurring in a 3' region of the exon 3 coding sequence; this region corresponds to where human mutations have been described. This localization of mRNA-decay competency suggested that a downstream region, such as the 3' UTR, may play a role in specifying decay of mutant Col10a1 mRNA containing nonsense mutations. We found that deleting any of the three conserved sequence regions within the 3' UTR (region I, 23 bp; region II, 170 bp; and region III, 76 bp) prevented mutant mRNA decay, but a smaller 13 bp deletion within region III was permissive for decay. These data suggest that the 3' UTR participates in collagen X last-exon mRNA decay and that overall 3' UTR configuration, rather than specific linear-sequence motifs, may be important in specifying decay of Col10a1 mRNA containing nonsense mutations.     

The value of sampling anomalous taxa in phylogenetic studies: major clades of the Asteraceae revealed

The largest family of flowering plants Asteraceae (Compositae) is found to contain 12 major lineages rather than five as previously suggested. Five of these lineages heretofore had been circumscribed in tribe Mutisieae (Cichorioideae), a taxon shown by earlier molecular studies to be paraphyletic and to include some of the deepest divergences of the family. Combined analyses of 10 chloroplast DNA loci by different phylogenetic methods yielded highly congruent well-resolved trees with 95% of the branches receiving moderate to strong statistical support. Our strategy of sampling genera identified by morphological studies as anomalous, supported by broader character sampling than previous studies, resulted in identification of several novel clades. The generic compositions of subfamilies Carduoideae, Gochnatioideae, Hecastocleidoideae, Mutisioideae, Pertyoideae, Stifftioideae, and Wunderlichioideae are novel in Asteraceae systematics and the taxonomy of the family has been revised to reflect only monophyletic groups. Our results contradict earlier hypotheses that early divergences in the family took place on and spread from the Guayana Highlands (Pantepui Province of northern South America) and raise new hypotheses about how Asteraceae dispersed out of the continent of their origin. Several nodes of this new phylogeny illustrate the vast differential in success of sister lineages suggesting focal points for future study of species diversification. Our results also provide a backbone exemplar of Asteraceae for supertree construction.     

Theoretical study of the partial molar volume change associated with the pressure-induced structural transition of ubiquitin

The partial molar volume (PMV) change associated with the pressure-induced structural transition of ubiquitin is analyzed by the three-dimensional reference interaction site model (3D-RISM) theory of molecular solvation. The theory predicts that the PMV decreases upon the structural transition, which is consistent with the experimental observation. The volume decomposition analysis demonstrates that the PMV reduction is primarily caused by the decrease in the volume of structural voids in the protein, which is partially canceled by the volume expansion due to the hydration effects. It is found from further analysis that the PMV reduction is ascribed substantially to the penetration of water molecules into a specific part of the protein. Based on the thermodynamic relation, this result implies that the water penetration causes the pressure-induced structural transition. It supports the water penetration model of pressure denaturation of proteins proposed earlier.     

Lessons from comparative analysis of species-specific imprinted genes

Genomic imprinting is generally believed to be conserved in all mammals except for egg-laying monotremes, suggesting that it is closely related to placental and fetal growth. As expected, the imprinting status of most imprinted genes is conserved between mouse and human, and some are imprinted even in marsupials. On the other hand, a small number of genes were reported to exhibit species-specific imprinting that is not necessarily accounted for by either the placenta or conflict hypotheses. Since mouse and human represent a single, phylogenetically restricted clade in the mammalian class, a much broader comparison including mammals diverged earlier than rodents is necessary to fully understand the species-specificity and variation in evolution of genomic imprinting. Indeed, comparative analysis of a species-specific imprinted gene Impact using a broader range of mammals led us to propose an alternative dosage control hypothesis for the evolution of genomic imprinting.     

Categories of resistance in St. Augustinegrass lines to southern chinch bug (Hemiptera: Blissidae)

The southern chinch bug, Blissus insularis Barber (Hemiptera: Blissidae), is the most important insect pest of St. Augustinegrass, Stenotaphrum secundatum (Walt.) Kuntze, in Florida and other Gulf Coast states. Resistance to southern chinch bug was identified previously in St. Augustinegrass lines 'FX-10' and NUF-76. Choice and no-choice tests and ovipositional and developmental studies were conducted to determine the categories of resistance in FX-10 and NUF-76 to southern chinch bug. When adult chinch bugs had a choice among attached stolons of three susceptible lines ('Floratam', 'Bitter Blue', and 'Palmetto') and the two resistant lines, chinch bugs were found significantly more often over a 5-d period on the susceptible lines. This result indicates the presence of antixenosis in the resistant lines FX-10 and NUF-76. In a no-choice study, chinch bugs produced less than half as many excretory spots on FX-10 as on the susceptible lines. Significantly fewer excretory spots produced by chinch bugs confined on NUF-76 accumulated by days 3 and 5 after release; however, on the first 2 d, the accumulative number of excretory spots was not significantly less than that found on susceptible lines. The no-choice study confirmed a high level of antixenosis in FX-10, a moderate level of antixenosis in NUF-76, and possible antibiosis in NUF-76. Ovipositional and developmental studies were conducted using only Floratam (a widely planted cultivar that was formerly resistant to B. insularis) and the two resistant lines. Adults released on Floratam produced 11 and 5 times more eggs and 18 and 9 times more offspring than adults on FX-10 and NUF-76, respectively. Plant anatomical and biochemical studies are required to investigate the exact cause of antixenosis in FX-10 and NUF-76 and possible antibiosis in NUF-76.     

类Yabeina与Chusenella生态环境的对比研究

对贵州盘县火铺剖面茅口组类分布规律的研究显示 ,尽管类 Yabeina及 Chusenella生存时代相同 ,并可见于同一剖面 ,但两者在具体产出层位上却具有互不共生的特点。利用多元统计分析方法对 Yabeina及 Chusenella分布层位的沉积环境进行了对比研究。结果表明 ,Yabeina生活在水动力条件较强的正常浅海、台地及水能量较高的近岸浅滩 ;Chusenella则主要适应于低能环境 ,生活在水动力条件较弱的清澈浅海、局限浅水台地     

The articular surface of the temporal bone in certain fossil hominoids

Although quantitative variations exist between living Man ( Homo sapiens sapiens ) and the extant great apes ( Pongo, Pan, Gorilla ) in such features of the articular surface of the temporal bone (a part of the temporomandibular joint) as the proportionate development of the postglenoid tubercle, the relative prominence of the articular tubercle and the slope of its posterior face, these do not individually effect a clear differentiation between the four extant genera. But in multivariate combination of these features, although Pan and Pongo are relatively closely associated, Gorilla and Homo sapiens sapiens are distinct, and also clearly differentiated from each other. The differences between genera of extant apes are, on average, as great as those between extant Man and individual apes.
As portrayed by such multivariate compound, this anatomical region in four fossil groups displays a unique configuration differentiating Homo sapiens neanderthalensis, Homo erectus pekinensis, Australopithecus africanus and Australopithecus robustus both from one another and from extant types. The differences are such that the fossil species lie uniquely and not intermediate between extant groups.
Definable age changes in this multivariate compound occur in both Man and apes but neither these, nor overall differences between adults, appear to be associated with marked contrasts in the pattern of jaw movement. It would thus seem improbable that inferences can be made from these features about the type of jaw movement that characterized the several fossil groups.     

Diets of large mammals in the woodlands around Lake Kariba,Rhodesia

Summary Large mammals that formerly occupied the Kariba basin of the Middle Zambezi Valley have, since it was flooded, been forced to live in a restricted range of deciduous woodland habitats. Feeding records in a study area on the shore of Lake Kariba showed that most herbivore species were browsers, and that only the tree components of their diets varied significantly between vegetation types. The common species varied a proportion of their diet seasonally. However, each depended upon a small range of food staples which differed from those of other species and acted as food refuges for part of the year. Diets overlapped during the wet season because of diversification, and in the late dry season because of common use of a restricted range of plants remaining green. There was a good correlation between the ability of a species to avoid dietary overlap and its biomass in the study area. The chance of interspecific competition occurring increased in the late dry season when most of the species would formerly have migrated from the study area to the flood plain. Despite the enforced occupation of only part of their former annual range the more common herbivores maintained a considerable degree of ecological separation through utilisation of different foods.     

Seed plant genera endemic to the Caribbean Island biodiversity hotspot: A review and a molecular phylogenetic perspective

The Caribbean Island Biodiversity Hotspot is composed primarily of the Bahamas and Greater and Lesser Antilles. A total of 180 genera (727 spp., ca. 9% of the species endemic to the Antilles) are restricted to this hotspot. Most of these genera are unispecific (51%), a pattern that is also found on other islands of the world. The majority of the endemic genera belong to the “Core Eudicot” clade, and they were published in two time periods (1854–1878 and 1904–1928). There are molecular phylogenies available for 63 of the endemic genera. However, phylogenetic reconstructions of only 21 genera are based on more than one independent DNA region and have well-supported clades and good taxonomic sampling. Six of the endemic genera form part of early-branching groups. We could not infer biogeographical conclusions from the molecular phylogenies of most of the endemic genera (43: 68%). There is an urgent need for (1) additional field studies to learn the conservation status of these genera, (2) effective protection of the habitats where the most endangered genera occur, and (3) additional biological and systematic studies of the least understood genera.     

不同放线菌属的化学与分子分类

随着科学的发展与新技术在分类学中不断地应用,放线菌分类学已从经典的形态分类转向化学分类(细胞壁化学组份,磷酸类脂,枝菌酸及甲基萘醌等).现在有些国家又开展了分子分类.本实验室自80年代始开展了放线菌化学分类,建立了上述化学指征的分析方法.自90年代起,又开展了分子分类,DNA-DNA杂交、23S rRNA寡核甘酸序列分析.近来,许多人用16S rRNA部分序列区分微生物不同的基因种.作者选用了23S rRNA部分序列区分放线菌的不同属种.现将研究结果简报如下:1 材料和方法1.1菌种菌株10,13,23,C_(43),350,41,53,4650及N分离自云南省土壤中.C_(51)及3306来自日本微生物菌种保藏中心.