Lake Erie Microcystis: Relationship between microcystin production, dynamics of genotypes and environmental parameters in a large lake

Cyanobacteria of genus Microcystis sp. have been commonly found in Lake Erie waters during recent summer seasons. In an effort to elucidate relationships between microcystin production, genotypic composition of Microcystis community and environmental parameters in a large lake ecosystem, we collected DNA samples and environmental data during a three-year (2003–2005) survey within Lake Erie and used the data to perform a series of correlation analyses. Cyanobacteria and Microcystis genotypes were quantified using quantitative real-time PCR (qPCR). Our data show that Microcystis in Lake Erie forms up to 42% of all cyanobacteria, and that Microcystis exists as a mixed population of potentially toxic and (primarily) non-toxic genotypes. In the entire lake, the total abundance of Microcystis as well as the abundance of microcystin-producing Microcystis is strongly correlated with the abundance of cyanobacteria suggesting that Microcystis is a significant component of the cyanobacterial community in Lake Erie during summer seasons. The proportion of total Microcystis of all cyanobacteria was strongly linked to the microcystin concentrations, while the percentage of microcystin-producing genotypes within Microcystis population showed no correlation with microcystin concentrations. Correlation analysis indicated that increasing total phosphorus concentrations correlate strongly with increasing microcystin concentrations as well as with the total abundance of Microcystis and microcystin-producing Microcystis.     

Impacts of seabird-derived nutrients on water quality and diatom assemblages from Cape Vera,Devon Island,Canadian High Arctic

Relationships between key phytoplankton attributes including Chl a-specific light absorption, pigment composition and concentration, photosynthesis, primary production and community structure were studied in two open shallow nutrient-poor coastal systems receiving similar amounts of sewage water. Both systems were significantly nitrogen limited. However, differences in wastewater treatment (primary vs secondary) and sewage dilution (50%) between the two systems caused a greater difference between systems than locally around the outflows. For both systems, water at the outlet had significantly lower water transparency caused by a 20% higher absorption by coloured dissolved organic matter. Nutrient concentrations were also elevated, gradually decreasing with distance north (governing current) of the outflows, causing higher abundance of nano-sized phytoplankton, higher content of carotenoid pigments, 20–50% higher Chl a-specific absorption coefficients and higher photosynthetic capacity. Although maximum rates of Chl a-normalised photosynthesis were strongly related to nitrate availability, no effects were found on the derived areal primary production or algal biomass suggesting that photosynthetic and optical parameters are more sensitive indicators of nutrient enrichment than biomass or productivity. Handling editor: Tasman Peter Crowe     

Response of cyanobacteria and phytoplankton abundance to warming,extreme rainfall events and nutrient enrichment

Cyanobacterial blooms are an increasing threat to water quality and global water security caused by the nutrient enrichment of freshwaters. There is also a broad consensus that blooms are increasing with global warming, but the impacts of other concomitant environmental changes, such as an increase in extreme rainfall events, may affect this response. One of the potential effects of high rainfall events on phytoplankton communities is greater loss of biomass through hydraulic flushing. Here we used a shallow lake mesocosm experiment to test the combined effects of: warming (ambient vs. +4°C increase), high rainfall (flushing) events (no events vs. seasonal events) and nutrient loading (eutrophic vs. hypertrophic) on total phytoplankton chlorophyll‐a and cyanobacterial abundance and composition. Our hypotheses were that: (a) total phytoplankton and cyanobacterial abundance would be higher in heated mesocosms; (b) the stimulatory effects of warming on cyanobacterial abundance would be enhanced in higher nutrient mesocosms, resulting in a synergistic interaction; (c) the recovery of biomass from flushing induced losses would be quicker in heated and nutrient‐enriched treatments, and during the growing season. The results supported the first and, in part, the third hypotheses: total phytoplankton and cyanobacterial abundance increased in heated mesocosms with an increase in common bloom‐forming taxa—Microcystis spp. and Dolichospermum spp. Recovery from flushing was slowest in the winter, but unaffected by warming or higher nutrient loading. Contrary to the second hypothesis, an antagonistic interaction between warming and nutrient enrichment was detected for both cyanobacteria and chlorophyll‐a demonstrating that ecological surprises can occur, dependent on the environmental context. While this study highlights the clear need to mitigate against global warming, oversimplification of global change effects on cyanobacteria should be avoided; stressor gradients and seasonal effects should be considered as important factors shaping the response.     

Identification and quantification of phytoplankton groups in lakes using new pigment ratios – a comparison between pigment analysis by HPLC and microscopy

1. Pigment analysis by high‐performance liquid chromatography (HPLC) combined with data analysis using the CHEMTAX program has proven to be a fast and precise method for determining the abundance of phytoplankton groups in marine environments. To determine whether CHEMTAX is applicable also to freshwater phytoplankton, 20 different species of freshwater algae were cultured and their pigment/chlorophyll a (Chl a) ratios determined for exponential growth at three different light intensities and for stationary growth at one light intensity. 2. The different treatments had a relatively insignificant impact on the absolute values of the diagnostic pigment/Chl a ratios, with the exception of cyanobacteria and cryptophytes for which the zeaxanthin/Chl a and alloxanthin/Chl a ratios varied considerably. 3. The pigment ratios were tested on samples collected in six different eutrophic Danish lakes during two summer periods using the CHEMTAX program to calculate the biomass of the phytoplankton groups as Chl a. The CHEMTAX‐derived seasonal changes in Chl a biomass corresponded well with the volume of the microscopically determined phytoplankton groups. More phytoplankton groups were detected by the pigment method than by the microscopic method. 4. Applying the pigment ratios developed in this study, the pigment method can be used to determine the abundance of the individual phytoplankton groups, which are useful as biological water quality indicators when determining the ecological status of freshwater lakes.     

Cyanobacteria and cyanotoxins in the source water from Lake Chivero,Harare, Zimbabwe,and the presence of cyanotoxins in drinking water

The phytoplankton community and cyanotoxins in Lake Chivero (formerly Lake McIlwaine) and the presence of cyanotoxins in treated drinking water were investigated between 2003 and 2004. A typical seasonal succession of Cyanobacteria species occurred from January to April, Bacillariophyta from May to July, and Cryptophyta and Chlorophyta from August to December. Microcystis aeruginosa and M. wesenbergii, known producers of the toxin microcystin, and the non-toxic cyanobacterium M. novacekii dominated during summer. The highest concentrations of microcystins and lipopolysaccharide endotoxins occurred when cyanobacterial biomass was highest. Lipopolysaccharide endotoxin concentrations in the lake ranged between 8 and 3 200 Endotoxin Units (EU) ml^?1. Microcystin concentrations in treated water were below the recommended safe limit for drinking water. Lipopolysaccharide endotoxin concentrations in treated water ranged from 0.15 to 11 EU ml^?1. The phytoplankton community comprised non-microcystin-producing species for the greater part of the study period.     

Inputs of seabird guano alter microbial growth,community composition and the phytoplankton–bacterial interactions in a coastal system

Seabird guano enters coastal waters providing bioavailable substrates for microbial plankton, but their role in marine ecosystem functioning remains poorly understood. Two concentrations of the water soluble fraction (WSF) of gull guano were added to different natural microbial communities collected in surface waters from the Ría de Vigo (NW Spain) in spring, summer, and winter. Samples were incubated with or without antibiotics (to block bacterial activity) to test whether gull guano stimulated phytoplankton and bacterial growth, caused changes in taxonomic composition, and altered phytoplankton–bacteria interactions. Alteromonadales, Sphingobacteriales, Verrucomicrobia and diatoms were generally stimulated by guano. Chlorophyll a (Chl a) concentration and bacterial abundance significantly increased after additions independently of the initial ambient nutrient concentrations. Our study demonstrates, for the first time, that the addition of guano altered the phytoplankton–bacteria interaction index from neutral (i.e. phytoplankton growth was not affected by bacterial activity) to positive (i.e. phytoplankton growth was stimulated by bacterial activity) in the low-nutrient environment occurring in spring. In contrast, when environmental nutrient concentrations were high, the interaction index changed from positive to neutral after guano additions, suggesting the presence of some secondary metabolite in the guano that is needed for phytoplankton growth, which would otherwise be supplied by bacteria.     

Regional, vertical and seasonal distribution of phytoplankton and photosynthetic pigments in Lake Baikal

A 3-year phytoplankton study was carried out in Lake Baikal(Siberia) as part of the CONTINENT project and in conjunctionwith a 60-year long monitoring programme by the Irkutsk StateUniversity. A combination of microscopy and high performanceliquid chromatography (HPLC) pigment analysis was used. Allover the lake, the dominant functional group (by biovolume)was the vernal diatom blooms, due to the dominance of endemicCyclotella species. Chlorophyll a (Chl a) was significantlyhighest at the Selenga and Barguzin inflows (2.39 ± 0.34and 2.49 ± 0.18 nmol L^–1, mean ± 95% CI,respectively) and higher in the South than in the North (1.43± 0.26 and 0.96 ± 0.13 nmol L^–1). This variationof Chl a reflected changes in the phytoplankton composition.Diatoms and Chrysophyceae were the major contributors to thetotal Chl a except in the South (Chlorophyceae) and SelengaDelta (cyanobacterial picoplankton). There were also indicationsof species composition changes due to enhanced P-loading fromthe Selenga River. However, canonical analyses indicated thattemperature and stratification were the major driving forcesfor regional distribution patterns and seasonal succession.It seems likely that further global warming will cause a shiftin the species and group composition towards small cells atthe expense of the large endemic diatom flora.     

Impact of Microzooplankton and Copepods on the Growth of Phytoplankton in the Yellow Sea and East China Sea

Dilution and copepod addition incubations were conducted in the Yellow Sea (June) and the East China Sea (September) in 2003. Microzooplankton grazing rates were in the range of 0.37–0.83 d⁻¹ in most of the experiments (except at Station A3). Correspondingly, 31–50% of the chlorophyll a (Chl a) stock and 81–179% of the Chl a production was grazed by microzooplankton. At the end of 24 h copepod addition incubations, Chl a concentrations were higher in the copepod-added bottles than in the control bottles. The Chl a growth rate in the bottles showed good linear relationship with added copepod abundance. The presence of copepods could enhance the Chl a growth at a rate (Z) of 0.03–0.25 (on average 0.0691) d⁻¹ ind⁻¹ l. This study, therefore parallels many others, which show that microzooplankton are the main grazers of primary production in the sea, whereas copepods appear to have little direct role in controlling phytoplankton.     

Seasonal variation of cyanobacteria and microcystins in the Nui Coc Reservoir, Northern Vietnam

In order to understand the environmental variables which promote the proliferation of cyanobacteria and variation in microcystin concentrations in the Nui Coc reservoir, Vietnam, physicochemical parameters, the occurrence, and abundance of phytoplankton, cyanobacteria, and microcystin concentration were monitored monthly through the year 2009–2010. The relationships between these parameters were explored using principal component analysis (PCA) and Pearson correlation analysis. The phytoplankton community was mainly dominated by the cyanobacterium Microcystis with higher cyanobacteria abundance during summer and autumn season. PCA and Pearson correlation results showed that water temperature and phosphate concentration were the most important variables accounting for cyanobacteria, Microcystis, and microcystin occurrence. Analysis of the toxins by high-performance liquid chromatography demonstrated the presence of two microcystin variants: microcystin-LR (MC-RR) and microcystin-ddRR (MC-ddRR) with total concentrations of the toxins in filtered samples from surface water ranging from 0.11 to 1.52 μg MC-LR equiv L^?1. The high concentrations of microcystin in the Nui Coc reservoir highlighted the potential risk for human health in the basin. Our study underlined the need for regular monitoring of cyanobacteria and toxins in lakes and reservoirs, which are used for drinking water supplies, not only in Vietnam but also in tropical countries.     

Dynamic responses of picophytoplankton to physicochemical variation in the eastern Indian Ocean

Picophytoplankton were investigated during spring 2015 and 2016 extending from near‐shore coastal waters to oligotrophic open waters in the eastern Indian Ocean (EIO). They were typically composed of Prochlorococcus (Pro), Synechococcus (Syn), and picoeukaryotes (PEuks). Pro dominated most regions of the entire EIO and were approximately 1–2 orders of magnitude more abundant than Syn and PEuks. Under the influence of physicochemical conditions induced by annual variations of circulations and water masses, no coherent abundance and horizontal distributions of picophytoplankton were observed between spring 2015 and 2016. Although previous studies reported the limited effects of nutrients and heavy metals around coastal waters or upwelling zones could constrain Pro growth, Pro abundance showed strong positive correlation with nutrients, indicating the increase in nutrient availability particularly in the oligotrophic EIO could appreciably elevate their abundance. The exceptional appearance of picophytoplankton with high abundance along the equator appeared to be associated with the advection processes supported by the Wyrtki jets. For vertical patterns of picophytoplankton, a simple conceptual model was built based upon physicochemical parameters. However, Pro and PEuks simultaneously formed a subsurface maximum, while Syn generally restricted to the upper waters, significantly correlating with the combined effects of temperature, light, and nutrient availability. The average chlorophyll a concentrations (Chl a) of picophytoplankton accounted for above 49.6% and 44.9% of the total Chl a during both years, respectively, suggesting that picophytoplankton contributed a significant proportion of the phytoplankton community in the whole EIO.     

Phytoplankton productivity in a pond of brownish-colored water in a Japanese lowland marsh, Naka-ikemi

To understand the characteristics of the ecosystem in Japanese lowland marsh, we investigated chlorophyll-a (Chl. a), photosynthesis and respiration of a phytoplankton community in a brownish-colored pond in Naka-ikemi marsh, Tsuruga, Fukui Prefecture. Chl. a concentrations and volumetric gross primary production rates ranged between 1.3–57.0 μg Chl. a l⁻¹ and 148–1619 μg C l⁻¹ day⁻¹ during the study period. Higher values of Chl. a and primary production rates were clearly observed from June to September, when the dominant algae were the phytoflagellates, Peridinium (Dinophyceae) and Cryptomonas (Cryptophyceae), with swimming ability. The trophic status of the pond water of Naka-ikemi marsh was defined as being in eutrophic condition based on the biomass and productivity of phytoplankton. However, depths of Z _1% showing the productive layer in this study site were relatively narrower than those observed in the hyper-eutrophic Lake Suwa with frequent cyanobacterial water bloom. Factor-attenuating underwater light intensity in Naka-ikemi marsh was presumed to be colored dissolved organic matter. Thus, not only phytoplankton primary production, but also allochthonous organic matter supplied from the catchment area seems to be the dominant factor in the whole energy budget of the pond. In conclusion, we regarded the pond ecosystem in Naka-ikemi marsh to be in a eutrophic–dystrophic condition.     

Cyanobacterial chemical warfare affects zooplankton community composition

1. Toxic algal blooms widely affect our use of water resources both with respect to drinking water and recreation. However, it is not only humans, but also organisms living in freshwater and marine ecosystems that may be affected by algal toxins. 2. In order to assess if cyanobacterial toxins affect the composition of natural zooplankton communities, we quantified the temporal fluctuations in microcystin concentration and zooplankton community composition in six lakes. 3. Microcystin concentrations generally showed a bimodal pattern with peaks in early summer and in autumn, and total zooplankton biomass was negatively correlated with microcystin concentrations. Separating the zooplankton assemblages into finer taxonomic groups revealed that high microcystin concentrations were negatively correlated with Daphnia and calanoid copepods, but positively correlated with small, relatively inefficient phytoplankton feeders, such as cyclopoid copepods, Bosmina and rotifers. 4. In a complementary, mechanistic laboratory experiment using the natural phytoplankton communities from the six lakes, we showed that changes in in situ levels of microcystin were coupled with reduced adult size and diminished juvenile biomass in Daphnia. 5. We argue that in eutrophic lakes, large unselective herbivores, such as Daphnia, are ‘sandwiched’ between high fish predation and toxic food (cyanobacteria). In combination, these two mechanisms may explain why the zooplankton community in eutrophic lakes generally comprise small forms (e.g. rotifers and Bosmina) and selective raptorial feeders, such as cyclopoid copepods, whereas large, unselective herbivores, such as Daphnia, are rare. Hence, this cyanobacterial chemical warfare against herbivores may add to our knowledge on population and community dynamics among zooplankton in eutrophic systems.     

Eutrophication mediates rapid clonal evolution in Daphnia pulicaria

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太湖西北湖区2003-2012年间氮磷浓度及浮游植物主要类群变化趋势分析

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Chlorophyll <Emphasis Type="Italic">a</Emphasis> as a measure of seasonal coupling between phytoplankton and the monsoon periods in the Gulf of Oman

We present data from a long time-series study to describe the factors that control phytoplankton population densities and biomass in the coastal waters of Oman. Surface temperature, salinity, nutrients, dissolved oxygen, chlorophyll a (Chl a), and phytoplankton and zooplankton abundance of sea water were measured as far as possible from February 2004 through February 2006, at two stations along the southern coast of the Gulf of Oman. The highest concentrations of Chl a (3 mg m⁻³) were recorded during the southwest monsoon (SWM) when upwelling is active along the coast of Oman. However, results from our study reveal that the timing and the amplitude of the seasonal peak of Chl a exhibited interannual variability, which might be attributed to interannual differences in the seasonal cycles of nutrients caused either by coastal upwelling or by cyclonic eddy activity. Monthly variability of SST and concentrations of dissolved nitrate, nitrite, phosphate, and silicate together explained about 90% of the seasonal changes of Chl a in the coastal ecosystem of the Gulf of Oman. Phytoplankton communities of the coastal waters of Oman were dominated by diatoms for most part of the year, but for a short period in summer, dinoflagellates were dominant.     

Comparative seasonal changes,and inter-annual variability and stability,in a 26-year record of total phytoplankton biomass in four English lake basins

Long-term sequences of total phytoplankton biomass are described and analysed in relation to environmental conditions and species composition. They are based on largely weekly sampling of mean concentrations of chlorophyll a ([Chl]) in the euphotic zones of four English lake basins over 26 years. More restricted sampling is used to illustrate the regulation of vertical distribution, and a comparison with several chemical indices of seston abundance.The seasonal variation of [Chl] is predominantly constructed from two peaks in spring and summer-autumn. These are separated by a universal and light-limited winter minimum that is accentuated in the deeper basins and a more variable early summer minimum to which diatom sedimentation, species replacement and grazing by Cladocera contribute. In some years or year-sequences additional peaks of varied origin may be interpolated (frequency modulation), especially in the shallower basins. Some variability of maxima with nutrient enrichment and particular species-crop failure or success (e.g. Ceratium spp.), and of minima with growth limitation, loss modes and species replacement, exists within and between basins (amplitude modulation).Depth-colonization is primarily controlled by restrictions on vertical mixing associated with the seasonal temperature/density stratification. Relative timings can be important for areal biomass development. Though [Chl] is mainly epilimnetic in summer, metalimnetic and hypolimnetic accumulations can also arise by growth in situ, flagellate migration, or sedimentation. Variations in the content of Chl below unit area, for entire lake column or euphotic zone, are less sensitive to trophic state than are mean euphotic concentrations because of compensating influences of morphometry and light penetration.Correspondences exist between temporal sequences of [Chl] and some chemical components of seston (C, N, reducing capacity), but ratios to P show much variation.Comparison is made with other observations of seasonal phytoplankton biomass, with reference to latitudinal influence and to proposed generalisations regarding seasonal pattern.     

Recruitment of Total Phytoplankton,Chlorophytes and Cyanobacteria from Lake Sediments Recorded by Photosynthetic Pigments in a Large,Shallow Lake (Lake Taihu,China)

Recruitment of total phytoplankton, chlorophytes and cyanobacteria from lake sediments to the water column was studied using photosynthetic pigments at one site (1.5 m) in Lake Taihu, a large shallow lake in China. Samples were taken weekly from the migration traps installed on the bottom from March to May 2004. Abundance of total phytoplankton, chlorophytes and cyanobacteria were represented by Chlorophyll (Chl) a, b, and phycocyanin (PC), respectively. Over the three months, total phytoplankton, chlorophytes, and cyanobacteria corresponding to 48.9%, 68.9% and 316.2% of their initial concentrations in surface sediments were recruited in Lake Taihu. However, compared with their increase in pelagic abundance over the same period, the recruitment accounted for a rather small inoculum. Accompanying the recruitment, total phytoplankton and chlorophytes declined and cyanobacteria increased in the upper 0–2 cm sediments; colonies of Microcystis aeruginosa in the water column enlarged from small size with several cells to large colonies with hundreds of cells. Thus, overwintering and subsequent growth renewal of pelagic phytoplankton merits further study and comparison with benthic survival and recruitment. (© 2005 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

Phytoplankton–zooplankton seasonal timing and the 'clear-water phase' in some English lakes

SUMMARY 1. An examination is made of the relative seasonal timing of the postwinter increase of phytoplankton and zooplankton populations in four English lake basins. It centres upon weekly sampling over 20 years and rough counts of larger Crustacea, as copepods and cladocerans, from filtered samples that were used for chlorophyll a (Chl) estimation. 2. Typically, a spring maximum of phytoplankton, dominated by diatoms and earlier in the shallower lakes, is accompanied or followed by a maximum of copepods and then one of cladocerans dominated by the Daphnia hyalina–galeata complex. Regarding timing, the maximum of copepods has no apparent relation with phytoplankton abundance (Chl). The maximum of cladocerans appears to be largely independent of variation in the phytoplankton maximum, but is generally associated with a minimum in Chl. Evidence for some direct causality in this inverse correlation after the spring phytoplankton maximum is best displayed by the shallow Esthwaite Water in which the peaks of Chl and cladocerans are separated further than in the deep Windermere basins where phytoplankton growth is delayed. In Esthwaite Water, and possibly often in Windermere, a principal minimum in Chl is ascribable to grazing by Daphnia. 3. The typical inverse relationship of Chl and cladocerans is lost in some years when relatively inedible large phytoplankters (e.g. colonial chrysomonads, filamentous cyanophytes) are abundant and Chl minima are less pronounced, although maxima of cladocerans still occur. Conversely, available edible phytoplankters include various small forms grouped as μ‐algae and Cryptomonas spp.; their probable depletions by Daphnia appear to be sequential and may limit the latter's maxima, whose inception is temperature‐dependent. 4. The spring–summer maxima of cladocerans and minima of Chl are generally coincident with a main seasonal maximum of Secchi disc transparency and light penetration – to which removal of non‐phytoplankton particles by filtering cladocerans may contribute.     

Water quality improvement and phytoplankton response in the drinking water source in Meiliang Bay of Lake Taihu, China

Water quality experienced changes throughout the 3-year ecological engineering experiment in the drinking water source in Meiliang Bay of Lake Taihu. Average concentrations of TN, TP, NH₄⁺, BOD₅ and transparency in the drinking water source during the period of July–December 2005 were 1.85, 0.13, 0.23, 3.03 mg L⁻¹ and 27.5 cm, respectively, decreasing by 47.9%, 21.2%, 83.3%, 54.4% and 24.2%, compared to concentrations from the same period in 2003. Concentrations of chlorophyll a and COD were 89.9 μg L⁻¹ and 6.45 mg L⁻¹, increasing by 27.9% and 17.7%, compared to the values in 2003. Cyanobacteria (mainly Microcystis) dominated the phytoplankton community in the ecological engineering area during July–December 2005. Densities of cyanobacteria and Microcystis were higher in 2005 than in 2004 and higher inside the engineering area than outside. Density percentages of cyanobacteria and Microcystis to total algae were above 90% and 60% during the bloom period. Average density of flagellate algae was higher during July–December 2005 than in 2004. Changes in water quality in the engineering area resulted mainly from the weakening of waves, decrease in concentrations of suspended solids, and assimilation of mass algae and periphytons. In spite of initial improvement of water quality, cyanobacterial bloom still determined the phytoplankton dynamics and variations. Additionally, nutrient concentration still remained at a high level without control of external loading. Therefore, a more holistic approach and long-term management should be adopted in Lake Taihu.     

The Status and Characteristics of Eutrophication in the Yangtze River (Changjiang) Estuary and the Adjacent East China Sea, China

Eutrophication has become increasingly serious and noxious algal blooms have been of more frequent occurrence in the Yangtze River Estuary and in the adjacent East China Sea. In 2003 and 2004, four cruises were undertaken in three zones in the estuary and in the adjacent sea to investigate nitrate (NO₃–N), ammonium (NH₄–N), nitrite (NO₂–N), soluble reactive phosphorus (SRP), dissolved reactive silica (DRSi), dissolved oxygen (DO), phytoplankton chlorophyll a (Chl a) and suspended particulate matter (SPM). The highest concentrations of DIN (NO₃–N+NH₄–N+NO₂–N), SRP and DRSi were 131.6, 1.2 and 155.6 μM, respectively. The maximum Chl a concentration was 19.5 mg m⁻³ in spring. An analysis of historical and recent data revealed that in the last 40 years, nitrate and SRP concentrations increased from 11 to 97 μM and from 0.4 to 0.95 μM, respectively. From 1963 to 2004, N:P ratios also increased from 30–40 up to 150. In parallel with the N and P enrichment, a significant increase of Chl a was detected, Chl a maximum being 20 mg m⁻³, nearly four times higher than in the 1980s. In 2004, the mean DO concentration in bottom waters was 4.35 mg l⁻¹, much lower than in the 1980s. In comparison with other estuaries, the Yangtze River Estuary was characterized by high DIN and DRSi concentrations, with low SRP concentrations. Despite the higher nutrient concentrations, Chl a concentrations were lower in the inner estuary (Zones 1 and 2) than in the adjacent sea (Zone 3). Based on nutrient availability, SPM and hydrodynamics, we assumed that in Zones 1 and 2 phytoplankton growth was suppressed by high turbidity, large tidal amplitude and short residence time. Furthermore, in Zone 3 water stratification was also an important factor that resulted in a greater phytoplankton biomass and lower DO concentrations. Due to hydrodynamics and turbidity, the open sea was unexpectedly more sensitive to nutrient enrichment and related eutrophication processes.