Long-Term Study of a Hantavirus Reservoir Population in an Urban Protected Area,Argentina

Green spaces in urban areas can play a key role in protecting wildlife. However, the presence of wildlife in urban areas can lead to human health risks. Although the presence of the rodent species Oligoryzomys flavescens (hantavirus reservoir) has been recorded in cities of Argentina, its population dynamics in this type of habitat is still unknown. Here, we evaluated: (1) long-term spatial and temporal patterns of O. flavescens abundance and how these patterns were influenced by weather factors and (2) the seroprevalence of hantavirus and the identity of the viral lineage circulating in the population that inhabits the Costanera Sur Ecological Reserve, a protected area in the city of Buenos Aires. Genetic results confirmed that the pathogenic ANDES Central Lechiguanas virus is present in O. flavescens populations inhabiting this urban reserve. Abundance of O. flavescens showed interannual and seasonal fluctuations, with maximum values in winter and spring and minimum ones in summer and autumn. Summers with the highest abundances of O. flavescens were preceded by warmer winters, while winters with lower abundances were preceded by warmer summers. On the other hand, accumulated precipitations in the previous 6 months positively affected winter abundance. These results could help the authorities in charge of the green spaces of Buenos Aires to identify priority areas and times of the year for the implementation of preventive measures that minimize the contact of rodents with visitors. Such measures could be intensified when winters are warmer than normal, and summers are cooler and wetter than normal.     

Urban landscape genetics: canopy cover predicts gene flow between white-footed mouse (Peromyscus leucopus) populations in New York City

In this study, I examine the influence of urban canopy cover on gene flow between 15 white-footed mouse (Peromyscus leucopus) populations in New York City parklands. Parks in the urban core are often highly fragmented, leading to rapid genetic differentiation of relatively nonvagile species. However, a diverse array of 'green' spaces may provide dispersal corridors through 'grey' urban infrastructure. I identify urban landscape features that promote genetic connectivity in an urban environment and compare the success of two different landscape connectivity approaches at explaining gene flow. Gene flow was associated with 'effective distances' between populations that were calculated based on per cent tree canopy cover using two different approaches: (i) isolation by effective distance (IED) that calculates the single best pathway to minimize passage through high-resistance (i.e. low canopy cover) areas, and (ii) isolation by resistance (IBR), an implementation of circuit theory that identifies all low-resistance paths through the landscape. IBR, but not IED, models were significantly associated with three measures of gene flow (Nm from F(ST) , BayesAss+ and Migrate-n) after factoring out the influence of isolation by distance using partial Mantel tests. Predicted corridors for gene flow between city parks were largely narrow, linear parklands or vegetated spaces that are not managed for wildlife, such as cemeteries and roadway medians. These results have implications for understanding the impacts of urbanization trends on native wildlife, as well as for urban reforestation efforts that aim to improve urban ecosystem processes.     

Importance of Backyard Habitat in a Comprehensive Biodiversity Conservation Strategy: A Connectivity Analysis of Urban Green Spaces

Connectivity has been an accepted goal in ecological restoration of wilderness areas for some time, but it is a relatively new approach in urban areas. The connectivity analysis presented here explores the numbers and patterns of corridors required to connect urban green spaces as part of an overall biodiversity conservation strategy. Green spaces in this study were weighted based on size and a habitat requirement of 0.5 ha for a hypothetical indicator species. Thirteen potential networks were evaluated using Gamma, Beta, and Cost Ratio indices. The study zone contained 54 green spaces (habitat nodes) with a combined area of 636.5 ha in a total urban area of approximately 2,600 ha. Several models (Travelling Salesman, Paul Revere, and Least Cost to User) were used to evaluate possible connections. These results indicated that at least 325 linkages are necessary to connect half of the nodes. Such large numbers of linkages are only feasible by enhancing the matrix of backyard habitat, planted boulevards, and utility rights‐of way found in a city. Strengthening such networks should work well to support the biota protected in urban parks and wildlife refuges and the seasonal migrants that sometimes depend on urban habitats for their survival.     

Beyond the landscape: Resistance modelling infers physical and behavioural gene flow barriers to a mobile carnivore across a metropolitan area

Urbanization affects key aspects of wildlife ecology. Dispersal in urban wildlife species may be impacted by geographical barriers but also by a species’ inherent behavioural variability. There are no functional connectivity analyses using continuous individual‐based sampling across an urban‐rural continuum that would allow a thorough assessment of the relative importance of physical and behavioural dispersal barriers. We used 16 microsatellite loci to genotype 374 red foxes (Vulpes vulpes) from the city of Berlin and surrounding rural regions in Brandenburg in order to study genetic structure and dispersal behaviour of a mobile carnivore across the urban‐rural landscape. We assessed functional connectivity by applying an individual‐based landscape genetic optimization procedure. Three commonly used genetic distance measures yielded different model selection results, with only the results of an eigenvector‐based multivariate analysis reasonably explaining genetic differentiation patterns. Genetic clustering methods and landscape resistance modelling supported the presence of an urban population with reduced dispersal across the city border. Artificial structures (railways, motorways) served as main dispersal corridors within the cityscape, yet urban foxes avoided densely built‐up areas. We show that despite their ubiquitous presence in urban areas, their mobility and behavioural plasticity, foxes were affected in their dispersal by anthropogenic presence. Distinguishing between man‐made structures and sites of human activity, rather than between natural and artificial structures, is thus essential for better understanding urban fox dispersal. This differentiation may also help to understand dispersal of other urban wildlife and to predict how behaviour can shape population genetic structure beyond physical barriers.     

Blow flies as urban wildlife sensors

Wildlife detection in urban areas is very challenging. Conventional monitoring techniques such as direct observation are faced with the limitation that urban wildlife is extremely elusive. It was recently shown that invertebrate‐derived DNA (iDNA) can be used to assess wildlife diversity in tropical rainforests. Flies, which are ubiquitous and very abundant in most cities, may also be used to detect wildlife in urban areas. In urban ecosystems, however, overwhelming quantities of domestic mammal DNA could completely mask the presence of wild mammal DNA. To test whether urban wild mammals can be detected using fly iDNA, we performed DNA metabarcoding of pools of flies captured in Berlin, Germany, using three combinations of blocking primers. Our results show that domestic animal sequences are, as expected, very dominant in urban environments. Nevertheless, wild mammal sequences can often be retrieved, although they usually only represent a minor fraction of the sequence reads. Fly iDNA metabarcoding is therefore a viable approach for quick scans of urban wildlife diversity. Interestingly, our study also shows that blocking primers can interact with each other in ways that affect the outcome of metabarcoding. We conclude that the use of complex combinations of blocking primers, although potentially powerful, should be carefully planned when designing experiments.     

城市化鸟类群落变化及其与城市植被的关系

持续而快速的城市化进程正在助长全球生物多样性的丧失,其中鸟类是城市生态系统的重要环节和城市生物多样性保护的重点目标,同时也是研究的热点内容。从城市环境变化压力下,鸟类群落组成与结构、空间分布和繁殖营巢方式的改变分析,重点介绍了支持城市地区鸟类多样性的植物环境因素与影响机制的最新研究成果。结果表明：1）城市中的植被和绿色空间为城市鸟类提供生存空间和食物资源,是城市鸟类最主要的栖息地。2）保留原生乡土植物和大型树木的地区能支持更丰富的鸟类物种。3）植被的结构和盖度对鸟类群落有显著影响。林冠覆盖率增加,复杂的垂直空间和多样的植物种类的组合产生各种不同类型的植物空间和栖息地类型,吸引不同的鸟类物种,相应地也会导致更丰富的鸟类群落。总之,保持和加强城市中植物环境良好和稳定是保护城市生物多样性的有效手段。据此,提出城市环境与鸟类群落关系研究的未来发展方向,指出了其在鸟类多样性保护和城市可持续发展等领域的应用前景。     

Human-induced fear in wildlife: A review

Humans, like natural predators, can induce fear in wildlife, which has the potential to alter species-level survival and fitness. Though anthropogenic impacts on wildlife have been studied in detail, how wildlife respond behaviorally to human presence has been less studied. Here, we provide a literature review on how humans interact with wildlife populations through the ecology of fear framework. Fear responses can be proactive or reactive, and can go beyond behavioral changes to alterations in physiology (such as increases in stress) or alterations in individual chromosome structure. Wildlife are more likely to flee from humans if they possess a larger body size, are female, or have fear-associated genotypes. Intelligence and individual differences lead to variations in wildlife’s fear responses to humans that can make studying fear difficult. Wildlife fear responses to humans depend on environmental factors, including context-specific human presentation and whether the animal was in urban or rural habitats. Human-induced fear in wildlife may have cascading impacts on broader wildlife communities and habitat structure caused by changes in how individual species interact with other species and the environment.     

Brown/biodiverse roofs: a conservation action for threatened brownfields to support urban biodiversity

Despite the need to restore urban green spaces, there are rarely enough open spaces due to urban densification. Thus, rooftops of buildings, which had not previously been regarded as spaces for planting of vegetation, have been utilised as a type of open space, and green roofing has become one of the rapidly developing fields of urban ecological engineering. However, current green roof approaches each have negative aspects in terms of enhancing urban biodiversity: intensive roofs in urban areas cannot contribute a large amount of green area, and extensive roofs cannot create high-quality green areas. In this report, we outline brown/biodiverse roofing in the UK, which is a relatively new type of extensive roofing used to provide brownfield wildlife with mimic brownfields. Brownfield refers to land that was previously developed for housing or industry but has since been abandoned and recolonised by different ecological assemblages. Brownfields provide habitat conditions similar to more natural habitats, and they can help maintain populations of some rare species. From the 1980s to the present day, the UK government has set a target of building 60% of new dwellings on brownfields. One of the most successful strategies that has been employed by the third constituency in its efforts to campaign for urban biodiversity and brownfield conservation has been to compromise with developers of brownfields and to persuade them to install wildlife-friendly mitigation technologies on roofs. This is the origin of brown/biodiverse roofs, which benefit from techniques that offer diverse habitats under severe conditions of thin substrate layer.     

Attitudes towards urban howler monkeys (Alouatta caraya) in Paraguay

Primates - Increasing urbanisation is encroaching into natural habitats and sometimes forcing wildlife into urban centres. Whether or not wildlife can thrive in an urban environment is dependent on...     

Integrative population genetics and metagenomics reveals urbanization increases pathogen loads and decreases connectivity in a wild bee

As urbanization continues to increase, it is expected that two-thirds of the human population will reside in cities by 2050. Urbanization fragments and degrades natural landscapes, threatening wildlife including economically important species such as bees. In this study, we employ whole genome sequencing to characterize the population genetics, metagenome and microbiome, and environmental stressors of a common wild bee, Ceratina calcarata. Population genomic analyses revealed the presence of low genetic diversity and elevated levels of inbreeding. Through analyses of isolation by distance, resistance, and environment across urban landscapes, we found that green spaces including shrubs and scrub were the most optimal pathways for bee dispersal, and conservation efforts should focus on preserving these land traits to maintain high connectivity across sites for wild bees. Metagenomic analyses revealed landscape sites exhibiting urban heat island effects, such as high temperatures and development but low precipitation and green space, had the highest taxa alpha diversity across all domains even when isolating for potential pathogens. Notably, the integration of population and metagenomic data showed that reduced connectivity in urban areas is not only correlated with lower relatedness among individuals but is also associated with increased pathogen diversity, exposing vulnerable urban bees to more pathogens. Overall, our combined population and metagenomic approach found significant environmental variation in bee microbiomes and nutritional resources even in the absence of genetic differentiation, as well as enabled the potential early detection of stressors to bee health.     

近自然社区公园的生物多样性特征——以北京市中心城区为例

城市绿地为城市动植物提供了重要栖息地，对城市生物多样性保护具有重要意义。然而，传统社区公园绿地（"传统绿地"）主要围绕安全、景观和游憩功能，植物种类偏少，群落结构单一，为城市野生动物提供食源和栖息地的资源有限。北京市以2035规划"留白增绿"为政策背景，在中心城区建设一系列小型近自然社区公园绿地（"近自然绿地"），在植物物种组成、群落结构和管理方式上有别于以往的传统绿地。一般认为生物多样性在一定范围内随面积的增大而提高，那么对于受到高度干扰的小型绿地，"近自然"特征是否能够显著提高其包括昆虫、鸟类在内的生物多样性？为探究这类近自然绿地的生物多样性特征，在2020年8月至2021年3月，综合采用样方法、样线法，对北京市西城区2个近自然绿地及4个传统绿地的植物、昆虫和鸟类进行调查，分析比较其多样性特征。结果表明，近自然绿地的灌木和草本层丰富度和多样性显著高于传统绿地，均匀度则无显著差异；近自然绿地的昆虫和鸟类的丰富度、多样性显著高于传统绿地，均匀度则无显著差异。与传统绿地相比，近自然绿地具有更丰富的鸟类食源、蜜源植物，以及更为复杂的植被垂直结构。根据以上结果，近自然绿地具有比传统绿地更为显著的生物多样性优势，建议在进行城市绿地建设时，应增加植被结构复杂的近自然绿地的比例，增加绿地的灌木和草本层多样性。研究成果不仅丰富了小面积绿地的生物多样性内涵，且可为大都市近自然绿地营建提供理论依据。本研究还将为今后公园设计、改造和管理提供新的思路，引导绿地向基于生物多样性保护的方向可持续发展。     

Urban coyotes select cryptic den sites near human development where conflict rates increase

The establishment of coyote (Canis latrans) populations in urban areas across North America has been accompanied by increased rates of human–coyote conflict. One factor thought to promote physical conflict between coyotes and people or pets is the presence of coyote pups near natal dens; however, this idea has not been tested, and no multivariate study of den selection within cities has occurred. Our objectives were to conduct a multivariate analysis of third- (i.e., home range) and fourth-order (i.e., den sites) habitat selection at dens and determine whether proximity to dens is associated with reports of physical conflict with coyotes. We found 120 dens by following coyote trails using snow tracking within urban green spaces that comprise presumed high-quality habitat for coyotes in Edmonton, Alberta, Canada. We used resource selection functions to assess habitat selection for dens, testing variables related to land cover and anthropogenic features at the third order, and testing microsite habitat features via paired sites at the fourth order. We defined conflict encounters from comments in a community reporting database and used general linear models to assess their spatial proximity to the nearest den and prevalence during the pup-rearing period compared to the rest of the year. Habitat selection was strongest at the fourth order, wherein coyotes selected for abundant hiding cover, steep slopes, and eastern exposure. The prevalence of physical conflict with coyotes increased during the pup-rearing period. Conflict also increased near known dens as an overall effect and when reports occurred outside of naturalized urban areas. These results suggest that coyotes in Edmonton den in green spaces near human development in microsites that minimize detection by people via steep slopes and dense vegetation. We suggest urban wildlife managers increase public safety education about recognition of coyote denning habitat and coyote defensive behaviors, especially outside of naturalized urban areas, because of the observed increase in physical conflict near dens.     

Direct and indirect effects of land use on floral resources and flower‐visiting insects across an urban landscape

Although urban areas are often considered to have uniformly negative effects on biodiversity, cities are most accurately characterized as heterogeneous mosaics of buildings, streets, parks, and gardens that include both ‘good’ and ‘bad’ areas for wildlife. However, to date, few studies have evaluated how human impacts vary in direction and magnitude across a heterogeneous urban landscape. In this study, we assessed the distribution of floral resources and flower‐visiting insects across a variety of land uses in New York City. We visited both green spaces (e.g. parks, cemeteries) and heavily developed neighborhood blocks (e.g. with high or low density residential zoning) and used structural equation modeling (SEM) to evaluate the direct and indirect effects of median income, vegetation, and development intensity on floral resources and insects in both settings. Abundance and taxonomic richness of flower‐visiting insects was significantly greater in green spaces than neighborhood blocks. The SEM results indicated that heavily‐developed neighborhoods generally had fewer flower‐visiting insects consistent with reductions in floral resources. However, some low‐density residential neighborhoods maintained high levels of floral resources and flower‐visiting insects. We found that the effects of surrounding vegetation on floral resources, and thus indirect effects on insects, varied considerably between green spaces and neighborhood blocks. Along neighborhood blocks, vegetation consisted of a mosaic of open gardens and sparsely distributed trees and had a positive indirect effect on flower‐visiting insects. In contrast, vegetation in urban green spaces was associated with increased canopy cover and thus had a negative indirect effect on flower‐visiting insects through reductions in floral resources. In both neighborhood blocks and green spaces, vegetation had a positive direct effect on flower‐visiting insects independent of the influence of vegetation on floral resources. Our results demonstrate how inter‐related components of an urban ecosystem can vary with respect to one another across a heterogeneous urban landscape, suggesting that it is inappropriate to generalize about urban systems as a whole without first addressing differences among component land use types.     

One strategy does not fit all: determinants of urban adaptation in mammals

Urbanisation exposes wildlife to new challenging conditions and environmental pressures. Some mammalian species have adapted to these novel environments, but it remains unclear which characteristics allow them to persist. To address this question, we identified 190 mammals regularly recorded in urban settlements worldwide, and used phylogenetic path analysis to test hypotheses regarding which behavioural, ecological and life history traits favour adaptation to urban environments for different mammalian groups. Our results show that all urban mammals produce larger litters; whereas other traits such as body size, behavioural plasticity and diet diversity were important for some but not all taxonomic groups. This variation highlights the idiosyncrasies of the urban adaptation process and likely reflects the diversity of ecological niches and roles mammals can play. Our study contributes towards a better understanding of mammal association to humans, which will ultimately allow the design of wildlife‐friendly urban environments and contribute to mitigate human‐wildlife conflicts.     

Wild capybaras as reservoir of shiga toxin-producing Escherichia coli in urban Amazonian Region

Capybaras are rodent widely distributed in South America, which inhabit lakeside areas including ecological parks and urban sites. Due to anthropological interaction, monitoring zoonotic pathogens in wildlife is essential for One Health. We investigated faecal samples from capybaras living in an urban area in Rio Branco (Acre, Brazil) for the presence diarrhoeagenic E. coli. Virulence factors from shiga toxin-producing E. coli (STEC), enterohaemorrhagic E. coli (EHEC), and enteropathogenic E. coli (EPEC) were screened by PCR. We detected at least one virulence factor in 81% of the animals, being classified as STEC and EHEC pathotypes. The presence of zoonotic E. coli in capybaras is a warning due to the highly frequent anthropological interactions with wild animals in this area. Our findings highlight the importance of investigating wild animals as carriers of zoonotic E. coli, requiring further investigations into wildlife surveillance and epidemiological monitoring.     

城市林木树冠覆盖研究进展

随着城市化进程的加快以及人们对由此产生的大量环境问题认识的不断加深,城市森林受到了越来越多的关注,它被越来越多的普通市民和科学家看做是有效解决城市环境与生态问题的最根本途径.在城市森林的维护、规划与建设过程中,城市林木树冠覆盖被认为是城市森林最重要的结构与功能衡量指标.针对我国城市森林研究与实践起步较晚的现实需求,从城市林木树冠覆盖的概念、分类与评价、城市林木树冠覆盖与城市森林服务功能、城市林木树冠覆盖的研究方法和城市林木树冠覆盖率与城市森林规划等4个方面,对国内外城市林木树冠覆盖研究的现状进行了评述.指出了该方面研究的未来趋势包括4个方面,首先,城市林木树冠覆盖研究,已经与城市的生态建设和日常生态、生产管理紧密结合.其次,高分辨率(米级以下)卫星影像在城市森林树冠调查与制图过程中的应用越来越普遍.第三,像面向对象的影像解译方法与激光雷达(LIDAR)等新技术将会得到更广泛的使用.第四,为了最终实现城市森林建设规划能够落地的目标,在城市森林建设的规划实施决策过程中,计算机辅助人工智能的应用将会普及.     

Urban biodiversity in local newspapers: a historical perspective

Due to rapid urbanization the conservation and values of urban wildlife are becoming increasingly important study objects. Unfortunately, the lack of historical data makes it difficult to assess the effects of long-term urban land-use changes and human attitudes on local biodiversity. In this paper we show that old newspapers may in some cases provide useful historical data on both urban wildlife and local attitudes towards it. In the city of Turku, southwest Finland, the leading newspaper published 316 observations or reports on local urban mammals, birds and reptiles in 1890–1920, and in addition to these a lot of information on contemporary attitudes towards urban wildlife. At least 12 species of noncaptive mammals, 32 species of birds, and three reptile species were documented in newspapers. The newspaper data seem fairly reliable, and provide valuable information on the development of urban biodiversity. In the study period animals visiting urban areas were often persecuted, in which both adults and children (mainly schoolboys) participated actively. Birds were persecuted less frequently than mammals or reptiles. Some bird species, especially 'song-birds', were actively supported by winter-feeding and by constructing nest-boxes. According to newspapers local people were interested in local biodiversity, especially on phenological events, and benefited from it by getting esthetic pleasure, pet animals, and information on seasonal changes.     

Urbanization and the ecology of wildlife diseases

Urbanization is intensifying worldwide, with two-thirds of the human population expected to reside in cities within 30 years. The role of cities in human infectious disease is well established, but less is known about how urban landscapes influence wildlife-pathogen interactions. Here, we draw on recent advances in wildlife epidemiology to consider how environmental changes linked with urbanization can alter the biology of hosts, pathogens and vectors. Although urbanization reduces the abundance of many wildlife parasites, transmission can, in some cases, increase among urban-adapted hosts, with effects on rarer wildlife or those living beyond city limits. Continued rapid urbanization, together with risks posed by multi-host pathogens for humans and vulnerable wildlife populations, emphasize the need for future research on wildlife diseases in urban landscapes.     

Are British urban foxes (Vulpes vulpes) “bold”? The importance of understanding human–wildlife interactions in urban areas

Human–wildlife interactions are believed to be increasing in urban areas. In Britain, numerous media reports have stated that urban foxes (Vulpes vulpes) are becoming “bolder,” thereby posing a risk to public safety. However, such claims overlook how an individual''s personality might influence urban fox behavior. Personality determines multiple aspects of an animal''s interactions with both conspecifics and its environment, and can have a significant impact on how people perceive wildlife. Furthermore, describing urban foxes as “bold” confounds two different but inter‐related behaviors, both of which influence an animal''s propensity to take risks. Neophobia affects an animal''s reaction to novelty, wariness its reaction to potential threats. Since urban wildlife frequently encounters both novel and threatening stimuli, a highly adaptable species such as the red fox might be predicted to exhibit reduced neophobia and wariness. We investigated how social status influenced both behaviors in Bristol''s fox population. Dominant foxes were significantly more neophobic and warier than subordinates, which adopt a more exploratory and risk‐taking lifestyle to meet their energetic and other needs. We found no seasonal effect on neophobia and wariness, although this may be due to sample size. The presence of conspecifics decreased neophobia for dominants, and wariness for both dominants and subordinates. We highlight the importance of considering animal social status and personality when planning management protocols, since interventions that destabilize fox social groups are likely to increase the number of subordinate foxes in the population, thereby increasing rather than decreasing the number of interactions between humans and urban foxes.     

Protecting wildlife from predation by owned domestic cats: Application of a precautionary approach to the acceptability of proposed cat regulations

Abstract While it is undeniable that owned domestic cats Felis catus (Mammalia: Felidae) kill large numbers of wildlife, it is contentious if this has significant impacts on wildlife populations. Under the precautionary principle such uncertainty does not preclude measures to reduce putative risk, but action should follow consultation with stakeholders. To initiate such consultation for the City of Armadale, Western Australia, we surveyed urban and rural residents to determine their opinions regarding putative impacts of owned cats on wildlife and the acceptability of proposed regulations. Key statements accepted by 70% or more of respondents, irrespective of their residence, gender or cat ownership status, included: (i) there is a need to regulate owned domestic cats; (ii) the presence of cats in nature reserves is harmful to wildlife; (iii) cats not owned by licensed breeders should be desexed; and (iv) local councils should be empowered to restrict the maximum number of cats per household. Seventy per cent or more of owners agreed to keep their cats on their property from sunset to sunrise and to register them if these measures became compulsory. All groups except urban men also indicated 70% or greater willingness to keep their cats on their property constantly if required. However, fewer than 40% of owners supported empowering local councils to enforce cat‐free zones. In this community, cat regulation excluding cat‐free zones should enjoy support. Similar approaches should be effective wherever the environmental impacts of owned domestic cats are debated, because compliance with such regulations should be high.