MicroRNA对胚胎干细胞的多能性网络调控

胚胎干细胞(Embryonic stem cells, ESCs)是一类能够无限增殖和诱导分化为多种类型细胞的干细胞。MicroRNA(miRNA)是一类内源性具有调控基因表达功能的非编码RNA, 在ESCs增殖和分化过程中起重要作用。MiRNA可以通过对ESCs多能性网络中的转录因子、细胞周期、表观遗传学、信号转导等方面调控, 促使ESCs维持多能性状态。文章重点综述了miRNA的生成过程、调控ESCs多能性的主要miRNA家族以及miRNA对ESCs多能性网络调控作用等内容。     

斑马鱼母源因子在胚胎发育中的作用

动物受精时,精子主要是将雄原核释放到卵子中,形成的合子中雌、雄原核融合为合子核,但受精卵基因组在前几次有丝分裂过程中不转录,合理的逻辑性推测是其早期发育完全依赖于卵质中储存的RNA和蛋白质,即母源因子.上世纪80年代对无脊椎动物的正向遗传研究发现,母源因子在卵子和胚胎极性的决定、早期胚胎的图式形成等方面发挥了决定性作用.过去10多年来,通过对斑马鱼和小鼠突变体的研究,也证明母源因子在脊椎动物胚胎早期发育中起着重要作用.本文主要综述斑马鱼母源因子在卵母细胞的极性、卵子的激活、早期细胞分裂、母源mRNA的清除、合子基因转录激活以及胚层的形成和分化、体轴的建立等方面的作用,相关知识对于研究人类生育障碍和先天性疾病的发生机制和诊治有借鉴意义.     

GATA6在肝脏发育中的作用及调控机制

GATA6 (GATA binding protein 6)是GATA锌指转录因子家族成员之一,以其保守的结合基序(G/A)GATA(A/T) 而得名。GATA家族在脊椎动物细胞命运决定与分化、增殖和迁移以及内胚层和中胚层来源的器官发育中具有重要作用。GATA6作为谱系特化因子、染色质重塑因子、多能性因子和“先锋因子”,在内胚层肝脏谱系决定、肝脏特化、肝芽生长以及肝母细胞增殖分化等阶段发挥关键的调控作用。本文综述了GATA6在肝脏发育中的作用及其研究进展,以期为进一步研究 GATA6 等发育关键转录因子的功能及调控机制提供参考。     

斑马鱼神经介素S直系同源基因的克隆、序列分析及组织表达

旨在更深入和广泛了解脊椎动物NMS前体基因的结构、进化和生理功能,利用生物信息学和分子生物学技术从斑马鱼脑组织中克隆得到了NMS前体基因序列,并对其基因和蛋白结构以及组织表达等方面进行了分析。结果表明,斑马鱼NMS前体基因cDNA序列编码110个氨基酸组成的多肽,其中包含22个氨基酸的信号肽。脊椎动物NMS前体蛋白序列比对结果显示,与哺乳动物不同,硬骨鱼类NMS前体蛋白在C端缺失很大一部分序列,不能形成类似哺乳动物的NMS成熟肽,经蛋白酶切割可能形成同源性较高的34个氨基酸的多肽。进化树和基因组分析显示,斑马鱼和青NMS前体蛋白聚类在一起,位于NMS这一分支上。同时,NMS前体基因在斑马鱼、青和人基因组中具有同线性关系。半定量RT-PCR结果显示,NMS前体基因在所检测的斑马鱼各组织中均有表达,其中以脑中表达量为最高。     

转录因子Oct-4调控下游靶基因及其与胚胎发育全能/多能性的关系

作为一个和胚胎发育全能／多能性相关的转录因子,Oct-4通过多种多样的调控机制激活或抑制不同靶基因的转录,从而在细胞的全能／多能性及未分化状态的调控维持中发挥重要的作用。已知受Oct-4调控的靶基因中,不仅有一些重要的转录因子如Rex-I,而且有一些参与重要细胞活动的基因如Fgf-4,因此对Oct-4调控下游靶基因的研究将有助于对其在分化发育中所起作用的进一步了解,同时对全能／多能性这一发育学基本问题及其调控网络有一个新的认识。     

Tenascin-r基因在斑马鱼胚胎发育中时空表达规律

Tenascin-r(TNR)是一种脊椎动物细胞外基质糖蛋白,在不同的物种间具有高度保守性,主要表达于神经系统,通过调节基质粘附状态和基质间相互作用而促进细胞的迁移、增殖和分化.在小鼠等动物模型中,TNR在中枢神经系统的发育中起重要作用,能控制大脑活动、调节适应性行为.而在斑马鱼研究中,TNR仅在视神经的发育和修复中起作用,通过对TNR在斑马鱼胚胎发育时期时空表达规律的研究,可以为利用斑马鱼进一步研究TNR的功能建立一个平台.     

斑马鱼尾鳍——理想的再生研究模型

脊椎动物组织和器官的发育与再生,与许多疾病的发生发展密切相关。不同物种间其再生能力差异很大,与哺乳动物相比,低等脊椎动物斑马鱼有着较强的再生能力。斑马鱼的多个组织器官如鳍、心脏、视网膜、脊髓、肝脏等都具有再生能力,对斑马鱼组织器官再生过程的研究将使我们获得大量有用的信息,能更好的理解脊椎动物再生功能,我们将以斑马鱼胚胎为实验材料,细致观察其尾鳍再生过程。     

心肌再生相关分子的调控机制

心脏是脊椎动物的中心器官,其适当大小及功能在整个生命周期都是至关重要的。由于心肌损伤造成的心肌梗死、心力衰竭等疾病在全世界范围内的发病率和死亡率逐年上升,目前依然没有找到好的治疗方法。已经发现在新生哺乳动物以及低等脊椎动物中存在多种进化保守的心脏再生机制,然而不幸的是,成年哺乳动物的心脏再生能力极其有限。近年来人们对心肌再生的研究越来越多,有证据表明成年哺乳动物可以产生新的心肌细胞。了解心脏再生的能力,并且掌握其中的原理是心血管方向研究的重要目标。本文主要综述了心肌再生相关分子及信号通路,如转录因子GATA4、微小RNA(microRNA)、Hippo信号通路、ERBB2和Notch通路以及一些炎症因子等发挥的调控作用及其机制。     

斑马鱼胚胎发育中细胞凋亡的研究进展

细胞凋亡是细胞在基因调控下发生的主动消亡过程,在脊椎动物胚胎发育过程中非常重要。斑马鱼作为一种十分理想的发育分子生物学研究模型,在有关细胞凋亡在诸如形态发生、性别分化等方面功能之活体在位研究中日益受到重视。目前,斑马鱼胚胎发育中主要凋亡通路研究已进行了不少工作,特别是caspase及其它凋亡调控基因在斑马鱼中已被成功克隆,通过转基因斑马鱼胚胎中胁迫诱导细胞凋亡并研究其信号通路以及斑马鱼胚胎形态发生的异常改变,为阐明这些凋亡调控基因与发育之间的关系提供了一个强有力的手段。     

幼年斑马鱼的视觉系统与捕食行为

神经环路的研究是揭示动物行为神经机制的关键。斑马鱼作为一种低等脊椎动物, 在神经环路的研究中有着独特优势。文章描述了斑马鱼视觉系统及其下游的神经环路, 重点讨论了它们在捕食行为中的可能作用。斑马鱼捕食行为主要依赖于视觉功能, 该过程涉及到视觉-运动通路各个层次的神经环路, 包括下游的网状脊髓命令神经元、脊髓内部的运动控制环路以及一些亟待研究的功能单元。随着在体记录和操纵神经元活动技术的成熟, 以及行为学范式的完善, 对斑马鱼捕食行为相关神经环路的研究将在未来数年内迅速发展, 同时也将推动神经科学相关研究的进步。     

Structural and cell adhesion properties of zebrafish syndecan-4 are shared with higher vertebrates

The syndecan proteoglycans are an ancient class of receptor, bearing heparan sulfate chains that interact with numerous potential ligands including growth factors, morphogens, and extracellular matrix molecules. The single syndecan of invertebrates appears not to have cell adhesion roles, but these have been described for mammalian paralogues, especially syndecan-4. This member is best understood in terms of interactions, signaling, and structure of its cytoplasmic domain. The zebrafish homologue of syndecan-4 has been genetically linked to cell adhesion and migration in zebrafish embryos, but no molecular and cellular studies have been reported. Here it is demonstrated that key functional attributes of syndecan-4 are common to both zebrafish and mammalian homologues. These include glycosaminoglycan substitution, a NXIP motif in the extracellular domain that promotes integrin-mediated cell adhesion, and a transmembrane GXXXG motif that promotes dimer formation. In addition, despite some amino acid substitutions in the cytoplasmic domain, its ability to form twisted clamp dimers is preserved, as revealed by nuclear magnetic resonance spectroscopy. This technique also showed that phosphatidylinositol 4,5-bisphosphate can interact with the zebrafish syndecan-4 cytoplasmic domain, and that the molecule in its entirety supports focal adhesion formation, and complements the murine null cells to restore a normal actin cytoskeleton identically to the rat homologue. Therefore, the cell adhesion properties of syndecan-4 are consistent across the vertebrate spectrum and reflect an early acquisition of specialization after syndecan gene duplication events at the invertebrate/early chordate boundary.     

RhoA acts downstream of Wnt5 and Wnt11 to regulate convergence and extension movements by involving effectors Rho kinase and Diaphanous: use of zebrafish as an in vivo model for GTPase signaling

Gastrulation shapes the early embryos by forming three germ layers, ectoderm, mesoderm and endoderm. In vertebrates, this process requires massive cell rearrangement including convergence and extension (CE) movements that involve narrowing and lengthening of embryonic tissues as well as cell elongation. Such polarization and movements require precise reorganization and regulation of the cytoskeleton network and cell adhesion. Rho small GTPases are key regulators for dynamic actin cytoskeleton. However, the signaling mechanisms underlying their functions in CE remain to be further elucidated. We have cloned the zebrafish Danio rerio rhoA and by capitalizing on the specific functional knockdown using morpholinos against rhoA and the availability of CE mutants defective in Wnt signaling, we showed that rhoA morphants were reminiscent to noncanonical wnt mutants with serious disruption in CE movements. Injection of rhoA mRNA effectively rescued such defects in wnt5 and wnt11 mutants. Furthermore, CE defects in rhoA knockdown or wnt mutants can be suppressed through functional bypass after ectopic expression of the two mammalian Rho effectors, the Rho kinase and Diaphanous (mDia). These results provide the first evidence that the RhoA in vivo acts downstream of Wnt5 and Wnt11 to effect, without affecting cell fates, on the CE movements in zebrafish embryos. Significantly, it elicits such effect via both effectors, Rho kinase and Dia. These findings also support the versatility of the zebrafish as a model to further investigate the roles of various classes of small GTPases in regulating cell dynamics in vivo.     

Dynamic changes in the gene expression of zebrafish Reelin receptors during embryogenesis and hatching period

The brain morphology of vertebrates exhibits huge evolutionary diversity, but one of the shared morphological features unique to vertebrate brain is laminar organization of neurons. Because the Reelin signal plays important roles in the development of the laminar structures in mammalian brain, investigation of Reelin signal in lower vertebrates will give some insights into evolution of vertebrate brain morphogenesis. Although zebrafish homologues of Reelin, the ligand, and Dab1, a cytoplasmic component of the signaling pathway, have been reported, the Reelin receptor molecules of zebrafish are not reported yet. Here, we sought cDNA sequence of zebrafish homologue of the receptors, vldlr and apoer2, and examined their expression patterns by in situ hybridization. Developmental gene expression pattern of reelin, dab1, vldlr, and apoer2 in the central nervous system of zebrafish was compared, and their remarkable expression was detected in the developing laminar structures, such as the tectum and the cerebellum, and also non-laminated structures, such as the pallium. The Reelin receptors exhibited different spatial and temporal gene expression. These results suggest a possibility that duplication and subsequent functional diversity of Reelin receptors contributed to the morphological and functional evolution of vertebrate brain.