Structure,composition and species diversity in an altitude-substrate matrix of rain forest tree communities on Mount Kinabalu,Borneo

We studied forest structure, composition and tree species diversity of eight plots in an environmental matrix of four altitudes (700, 1700, 2700 and 3100 m) and two types of geological substrates (ultrabasic and non-ultrabasic rocks) on Mount Kinabalu, Borneo. On both substrate series, forest stature, mean leaf area and tree species diversity (both 4.8 cm and 10 cm diameter at breast height [dbh]) decreased with altitude. The two forests on the different substrate series were similar at 700 m in structure, generic and familial composition and tree species diversity, but became dissimilar with increasing altitude. The decline in stature with altitude was steeper on the ultrabasic substrates than on the non-ultrabasic substrates, and tree species diversity was generally lower on ultrabasic substrates than on non-ultrabasic substrates at 1700 m. The forests on non-ultrabasic substrates at higher altitudes and those on ultrabasic substrates at the lower altitudes were similar in dbh versus tree height allometry, mean leaf area, and generic and familial composition at 1700 m. These contrasting patterns in forest structure and composition between the two substrate series suggested that altitudinal change was compressed on the ultrabasic substrates compared to the non-ultrabasic substrates. Tree species diversity was correlated with maximum tree height and estimated aboveground biomass, but was not with basal area, among the eight study sites. We suggest that forests with higher tree species diversity are characterized by greater biomass allocation to height growth relative to trunk diameter growth under more productive environment than forests with lower tree species diversity.     

Diversity of forest tree species in Yanbaru,the northern part of Okinawa Island

The natural forests of Yanbaru, in the northern part of Okinawa Island, harbor many endemic and endangered birds and mammals, and are dominated by an evergreen oak, Castanopsis sieboldii. The Simpson diversity (D) and equitability index (J) were calculated using survey data on number of stems ( 4.5 cm DBH) of each species found in sample plots.Near-climax old forests (age 50 yr, without pine trees) showed high species diversity of trees, 0.92 ± 0.01 in D and 0.83 ± 0.05 in J for trees of which DBH 4.5 cm, and 0.81 ± 0.04 in D and 0.75 ± 0.05 in J for trees of DBH 10 cm.These high values are comparable to those of tropical rain forests. Although even young forests showed high species diversity, diversity indices tended to increase with forest age.The U.S. Marine Corps leases the eastern half of Yanbaru which contains most of these near-climax forests. Conservation of natural forests in this area is recommended.     

Detection and partial characterization of two antigenically distinct β-amylases in developing kernels of wheat

A -amylase (EC 3.2.1.2) was identified in the outer pericarp (P) of developing seeds of wheat (Triticum aestivum L.) and compared with the well known -amylase which is synthesized during seed development in the starchy endosperm (E). The enzyme P already exists in the tissues before anthesis and vanishes at the time when E starts to accumulate. The isoelectric-focusing patterns of P and E are very similar. The relative molecular weight (M_r) of P is slightly higher than that of E (66 and 64.5 kDa, respectively). Both P and E exhibit common epitopes in addition to epitopes specific for each of them. The two enzymes were identified in small amounts in the green tissues of the developing seeds (inner pericarp and testa). No antigenic difference was detected between P and the -amylases of roots and leaves.Abbreviations P pericarp -amylase - E endosperm -amylase - IS1 anti--amylase immune serum - IS2 anti- and anti- amylase immune serum - IS3 anti- amylase immune serum - IEF isoelectric focusing - IgG immunoglobulin G The authors thank Dr. P. Ziegler (Universität Bayreuth, FRG) for stimulating discussion and for useful suggestions during the writing of the text. The authors thank Miss C. Mayer for her skillful technical assistance.     

Structure and floristics of secondary and old-growth forest stands in lowland Costa Rica

We characterized stand structure and floristic composition of woody life forms in three, 16–18 yr old secondary stands that regenerated after pasture abandonment, and three nearby old-growth stands of tropical rain forest in lowland Costa Rica. Basal area and stem density for each of four plant size classes (seedlings, saplings, treelets, trees) were similar among stand types, but density of adult canopy palms (individuals 10 cm DBH), was lower in the secondary stands. We estimate that 15% of the basal area of stems 10 cm DBH correspond to remnant trees in our secondary stands. The observed rapid woody regrowth compared to other published studies in the lowland neotropics, can be attributed to moderate land use and possibly, to the influence of nutrient-rich volcanic soils in the study area. Overall, plant species richness was lower in the secondary stands, but this difference was less pronounced in the smallest size classes (seedlings, saplings). Median percent similarity of all pairwise stand comparisons showed that floristic composition of saplings (stems 1 m tall and 5 cm DBH) was more similar between secondary and old-growth stands than for trees (stems 10 cm DBH). Because the potential value of secondary forests in conserving woody plant diversity appears highest for the young size classes, we suggest that further studies on floristic composition, especially those addressing the dynamics of the understory component, are needed to refine our understanding of the role of this natural resource in the maintenance of plant biodiversity in disturbed landscapes.     

Altitudinal distribution patterns of Mexican cloud forests based upon preferential characteristic genera

Mexican cloud forest vegetation has been recorded in temperate humidconditions at rather different elevations ranging from 600 to 3000m. They are characterised by high biodiversity under continuousfoggy situations. Some authors state that many genera are quantitativelyimportant to depict cloud forest conditions. Detailed quantitative studiescomprising most of the localities of Mexican cloud forests to depict altidudinaldistribution ranges on basis of preferential genera have not been previouslyconducted. The aim of this study is (1) to recognise characteristic preferentialgenera of Mexican cloud forest conditions, and (2) to determine quantitativelythe current altitudinal distribution pattern of this vegetation type. From adatabase composed by 995 genera inhabiting in the Mexican cloud forests, sixgenera were chosen preliminary as preferential characteristics. These wereClethra, Magnolia, Meliosma, Styrax, Symplocos, andTernstroemia. These genera include 70 species that occur atover 70% of the current Mexican cloud forest fragments. The mean elevation ofthese genera records were 1853 m (±600 at 95% confidenceinterval). The results showed that Mexican cloud forests occur optimally between1250 and 2450 m. Additionally, Mexican cloud forest is the bestdistributed within some provinces of the Región Mesoamericana deMontaña, chiefly at Serranías Meridionales,Sierra Madre Oriental, and SerraníasTransístmicas. The results are discussed in light of theimportance of these regions as diversification centres.     

A novel antifungal from an Actinomadurae with preferential activity against the mycelial phase ofCandida albicans

Summary Sch 40873, a novel antifungal compound isolated from the fermentation broth of anActinomadura spp. was discovered in an assay designed to detect compounds with preferential activity against the invasive mycelial form ofCandida albicans. The geometric mean MIC of Sch 40873 against sevenCandida spp. in Sabouraud dextrose broth (yeast phase) was 58 g/ml and in Eagles minimum essential medium (mycelial phase) was <0.03 g/ml. Sch 40873 demonstrated slight in vivo topical activity in a hamster vaginal model.     

TNF alpha is required for hypoxia-mediated right ventricular hypertrophy

Hypoxia has been shown to activate the pleiotropic cytokine TNF in the lung. TNF in turn, is known to induce pulmonary vasoconstriction. Additional effects of this cytokine in hypoxia mediated cardiopulmonary remodeling are poorly understood. To further evaluate the role of TNF in chronic hypoxia we exposed TNF null (TNF–/–) and wild-type mice to three weeks of hypobaric hypoxia (10% O₂). Equivalent erythocytosis (Hematocrit increased by 40%) developed in both genetic backgrounds. In contrast, right ventricular systolic pressure increased in response to three weeks of hypoxia in the wild-type mice ( 75%), yet was unaltered in the TNF–/– mice. Concomitantly right ventricular hypertrophy was attenuated in the TNF–/– mice (35 ± 5% increase) when compared to wild-type mice (124 ± 6% increase p < 0.001, n 20). Interestingly in both strains the lung wet weights increased to a similar degree in response to hypoxia. In conclusion, our data demonstrate that TNF is an integral autocoid in chronic hypoxia mediated right ventricular hypertrophy. Moreover, additional components of cardiopulmonary remodeling may be regulated by TNF signaling as suggested by the negligible right ventricular systolic pressure response to hypoxia in the absence of TNF.     

Susceptibility of clinical isolates of yeasts to anti-fungal agents

The antimicrobial activity of amphotericin B, 5-fluorocytosine, nystatin, clotrimazole and miconazole were compared in vitro against 244 strains of yeasts that had been isolated from clinical specimens. The yeasts used in this study included 20 species of Candida, Cryptococcus, Saccharomyces Geotrichum, Rhodotorula, Torulopsis and Trichosporon. The majority of the strains (78%) had an MIC of 0.5 g/ml for amphotericin B, 81% an MIC of 1 g/ml for 5-fluorocytosine, 99% 8 g/ml for nystatin, 91%, 8.0 g/ml for clotrimazole and 98% had an MIC of 4.0 for miconazole. Of the anti-fungal agents tested, 5-fluorocytosine and nystatin were found to have the greatest antifungal activity.     

Floristic variation within kerangas (heath) forest: re-evaluation of data from Sarawak and Brunei

The variation in species composition of trees 7.6 cm gbh in thirty-eight plots (mostly c. 0.2 ha in extent) from physiognomically-defined kerangas forest were re-analyzed by principal components analysis ordination (species centering and standardization by sample norm). Analyses were performed separately on basal area abundances, on the densities of trees in three size classes (7.6, 30.5 and 61.0 cm gbh) and on the density of small and large trees (7.6-<30.5 and 30.5-<61.0 cm gbh). A total of 636 taxa were reduced to 381 for analysis, removing those of very low density and plot frequency.Three groups of plots were identified: forest at low elevation, and generally coastal, on deep humus podzols; forest at intermediate elevation on mostly red-yellow podzols with affinities to dipterocarp forest; and forest at high elevation on mostly peaty podzols. The first group was divisible into five subgroups along a drainage gradient, while the more poorly drained plots showing affinities to peatswamp forest. Forty to eighty of the taxa, depending on the criteria for selection, were sufficient to define a stable, reduced spatial structure of the data matrix. Two subgroups, both coastal on deep podzols, represent the extreme form of kerangas forest per se. A comparison of Agathis borneensis- and Shorea albida-dominated plots revealed few other associated and differentiating taxa.Patterns were clearest from analyses of basal area data and of densities of all and small trees. Ordinations and grouping of plots for small, but not large, tree densities were similar to those for basal area. Different species were differentiated on the basis of the abundance measure, leading to group (tabular) definition of associations in a dual manner. A new system of summarization is presented which combines basal area, density and frequency in a graded hierarchical approach.The association between vegetation and soil type was difficult to unravel because of the limited environmental space sampled. Soil type was confounded with elevation, rainfall and geographical location. A major factor is clay content probably affecting nutrient status and water holding properties. Modal analysis of small tree densities showed clearest patterns in this respect. There were no patterns at the family or genus level, nor in leaf size spectra within kerangas.Problems in the treatment, analysis and summarization of tropical forest data sets are discussed. These problems centre on the scale and intensity of field sampling and the advantages of measuring small trees leading to a dual basal area and density approach. All published studies, including this one, within kerangas forest have used inadequate sampling for the purposes of revealing species changes with respect to soil type and composition.     

Stem distribution and clonal structure of Chamaecyparis pisifera growing in an old-growth beech-conifer forest

To elucidate sapling patch formation and the mode of regeneration occurring in Chamaecyparis pisifera, we investigated stem distribution and clonal structure of this species in an old-growth beech-conifer forest in central Japan. The study was carried out in a 1-ha plot using small and large sapling (d.b.h.<5cm, 0.5mheight<2 m and d.b.h.<5cm, height2m, respectively) and adult (d.b.h.5cm) stems of Chamaecyparis pisifera. The numbers of small and large sapling stems were 677 and 149 in the plot, respectively, and they were strongly aggregated. Adult stems occurred at much lower density (90 stems in the plot) and were weakly clustered. Fifty multilocus genotypes at nine allozyme loci were detected among sampled stems. Small and large sapling stems with identical genotypes showed aggregated distribution, while some neighboring adult stems had the same genotypes. Spatial autocorrelation of alleles in small and large sapling stems revealed a strongly positive association among stems within a distance of 10m; but a negative association as distance increased. In adult stems, a strongly positive value was found only in the shortest distance class. These results indicate that clonal growth by layering occurred at the sapling stage and contributed to patch formation. Our results also suggest that the clonal growth by layering is ecologically significant throughout the life history of Chamaecyparis pisifera, particularly as an important strategy for the sapling establishment in the early stage of regeneration process.     

Yeast ribosomal proteins

Summary Homology maps between bacteriophages 81, 80 and were constructed on the basis of electron microscope observation of DNA heteroduplexes. In 81/80 heteroduplex, the left half and the right terminal region of 13% the total molecular length were highly homologous, while the remaining region covering the early gene cluster was entirely nonhomologous. In 81/ heteroduplex, high-degree homologies were detected at the left 14% terminal region covering the head gene cluster, the central 3.8% region covering the att-int-xis region and the 1.3% Q homology region. Low-degree homologies of shorter length were scattered at the tail gene cluster, b2 region, cIII region, PQ region and SR region. Comparing our results with the homology maps of other lambdoid phages reported by Simon et al. (1971) and Fiandt et al. (1971), a phylogenic relation of 81 to other lambdoid phages and the role of recombination in the course of divergence of lambdoid phages are discussed.     

Ongoing ultradian activity rhythms in the common vole,Microtus arvalis,during deprivations of food,water and rest

Summary The timing mechanism underlying ultradian (2–3 h) activity patterns in the common vole, Microtus arvalis, was studied using behavioural deprivation experiments. These were aimed at distinguishing between a homeostatic control mechanism, in which the rhythmic behaviour itself is part of the causal loop, and a clock mechanism, independent of the behaviour.In 175 experiments, deprivation of food during 3 ultradian cycles in (subjective) daytime did not result in significant changes in the ultradian periodicity of attempts to obtain the food, compared with ad lib. access to food and water. A minor, but significant increase in ultradian activity time () occurred in the course of the deprivation, but this was compensated by a shorter ultradian rest (). These results were obtained both in intact animals (n = 24), which showed ultradian and circadian rhythmicity in behaviour, and in animals (n = 21) with electrolytic lesions aimed at the suprachiasmatic nuclei (SCN), which lacked the circadian modulation of behaviour. Simultaneous deprivation of water and food in 8 voles without circadian rhythmicity during 40 experiments also did not lead to any change in the ultradian periodicity of feeding attempts.Rest deprivation was studied in 5 SCN lesioned voles, by forcing running wheel activity to continue following spontaneous running. Thus, the experimental activity bout was artificially lengthened to 2–9 h in 67 experiments. The onset of the subsequent rest episodes occurred independent of the duration of the preceding . The duration of was dependent on the preceding, experimental in a periodic fashion. The interval experimental (=lengthened +following ) was equal to one, two or three times the control (obtained on nonexperimental days). This result fits the prediction of a clock model and is in conflict with a monotonicincrease of with , as expected in a homeostatic, restorative process.It is concluded that the ultradian timing of activity in the common vole can be explained neither by homeostatic hunger or thirst mechanisms nor by homeostatic rest/activity regulation. The results strongly suggest an independent clock system generating ultradian feeding rhythms in the common vole.Abbreviations DD continuous darkness - LD light-dark regime - LL continuous light - RCA retrochiasmatic area - ARC arcuate nucleus - SCN suprachiasmatic nuclei - ultradian period - ultradian activity time - ultradian rest time     

High tree alpha-diversity in Amazonian Ecuador

In a 1 ha square plot of terra firme forest at 260 m elevation in Amazonian Ecuador, all trees with diameter at breast height (dbh) 5 cm were studied. There were 1561 individuals, 473 species, 187 genera and 54 families. Of these, 693 individuals, 307 species, 138 genera and 46 families had a dbh 10 cm. This is the highest number of tree species ever recorded for a tropical rain forest sample of this size. In both dbh classes, the most species-rich families were: Fabaceae sensu lato (including Mimosaceae and Caesalpiniaceae), Lauraceae and Sapotaceae; the most species-rich genera, were Pouteria, Inga and Protium. The vertical space was partitioned among species: 166 species were found only in the 5–10 dbh cm class and were mostly sub-canopy treelets, and 307 species with dbh 10 cm were mostly large canopy trees.     

Patterns and conformations of commonly occurring supersecondary structures (basic motifs) in protein data bank

Short peptides connecting-helices and-strands have been analyzed in 240 proteins refined at resolutions of 0.25 nm or better. Connecting peptides of lengths between one and five residues have been classified as part of supersecondary motifs of four types:, , , and. Careful consideration has been given to the definition of secondary structures on the basis of hydrogen bonds and main-chain conformational angles. Using five classes of residue conformation—a, b, e, l, t—in the nonregular structure regions of, space, 34 classes of supersecondary motifs occurring at least five times have been identified. Among these 34 classes, 11 classes that occur more than 25 times are commonly occurring supersecondary structure motifs. The patterns and conformations of the 11 commonly occurring supersecondary structure motifs have been characterized, demonstrating that patterns and conformations adopted by supersecondary structure motifs are limited. The results have relevance to structure prediction, comparative modeling, and protein folding.     

Contribution of tree species to the biodiversity of a 1ha Old World rainforest in Brunei, Borneo

Tree biodiversity data is presented for a 1-ha permanent study plot on a low slope position of the Kuala Belalong valley in Temburong District, Brunei, Borneo. This is the first study in the region to document the tree flora of a low slope. All trees 5cm at 1.3m were mapped, measurements of dbh and height taken, and identified to species and morpho-species level. The total and relative values of each family for density, diversity, dominance and Importance Value Indices were calculated. A total of 1062 stems were recorded on the plot (1019 live, 43 dead) with a total of 278 species representing 110 genera in 49 families. The most ecologically significant family as determined by the Family Importance Value (FIV) was Euphorbiaceae with a value of 40 and'the'most significant species, using the Importance Value (IV), was morpho-speciesFordia splendissima with an IV of 29. The total basal area of all living trees was 31.43m². Forest structure was marked by a few tall (>45m) emergents, for example,Koompassia excelsa, Crypteronia griffithii and two species of the Dipterocarpaceae family, however, lower understorey and sub-canopy species dominated the plot with the average height of all individuals over the hectare being 11m.     

Solution conformations of proline rings in proteins studied by NMR spectroscopy

Summary Three different conformations of proline rings in a protein in solution, Up, Down and Twist, have been distinguished, and stereospecific assignments of the pyrrolidine -, - and -hydrogens have been made on the basis of ¹H-¹H vicinal coupling constant patterns and intraresidue NOEs. For all three conformations, interhydrogen distances in the pairs -³, ³-³, ²-², ²-², and ³-³ (2.3 Å) are shorter than those in the pairs -², ²-³, ³-², ²-³, and ³-² (2.7–3.0 Å), resulting in stronger NOESY cross peaks. For the Up conformation, the ³-² and ²-³ spin-spin coupling constants are small (<3 Hz), and weak cross peaks are obtained in a short-mixing-time (10 ms) TOCSY spectrum; all other vicinal coupling constants are in the range 5–12 Hz, and result in medium to strong TOCSY cross peaks. For the Down form, the -², ²-³, and ³-² vicinal coupling constants are small, leading to weak TOCSY cross peaks; all other couplings again are in the range 5–12 Hz, and result in medium to strong TOCSY cross peaks. In the case of a Twist conformation, dynamically averaged coupling constants are anticipated. The procedure has been applied to bovine pancreatic trypsin inhibitor and Cucurbita maxima trypsin inhibitor-V, and ring conformations of all prolines in the two proteins have been determined.     

Effects of light quantity and quality during development on the morphology and stomatal physiology of Commelina communis

Summary The effects on plant growth and stomatal physiology of alterations in light quantity and quality during development were investigated in the C₃ monocot, Commelina communis. Reduction in light intensity resulted in decreased branching and stem elongation, with effects more severe under neutral shade (R:FR1.0) than under leaf shade (R:FR0.4) conditions. Shade treatments had no effect on the leaf area or stomatal density of newly expanded leaves. Gas exchange measurements on leaves that had expanded under the different treatments indicated that a reduction in light intensity decreased the magnitude and slowed the kinetics of stomatal responses to pulses of blue light, particularly in plants from the neutral shade treatment. These results indicate that the specific stomatal response to blue light is plastic, and is modulated by the light environment prevailing during leaf development.     

Tree competition and species coexistence in a warm-temperate old-growth evergreen broad-leaved forest in Japan

The growth dynamics and mode of competition between adult trees 5.0cm in diameter at breast height (DBH) of nine abundant treespeciesoccupying ca. 85% of the total basal area were investigated in a 4ha study plot (200 m × 200 m) of awarm-temperate old-growth evergreen broad-leaved forest in the Tatera ForestReserve of Tsushima Island, southwestern Japan. In the plot, adult trees 5.0 cm DBH co-occurred with 35 woody plant species (except forwoody vine species). The most dominant and largest species,Castanopsis cuspidata var. sieboldiiexhibited a bimodal DBH distribution; it was found in both the upper and lowervertical layers. Other tree species had unimodal DBH distributionscorrespondingmostly to the lower vertical layer. We developed a model for individual growthincorporating both intra- and interspecific competition and degree ofcompetitive asymmetry. One-sided interspecific competition was detected in 17cases out of the 66 possible combinations on the scale of the 4 hastudy plot. The direction of interspecific competition was generally one-sidedfrom layer-I species to layer-II and III ones. The effects of two-sidedcompetition were detected only in layer-II and III species. OnlyDistylium racemosum exhibited one-sided intraspecificcompetition. We also found 11 cases of positive interspecific relationships.Generally, competitive relationships prevailed over positive relationshipsbetween adult trees in this warm-temperate evergreen broad-leaved forest.Competition between adult trees 5.0 cm in DBH did not occurinthe same vertical layer, but occurred only between trees in different verticallayers. This suggests that competition between adult trees 5.0cm in DBH plays a key role in the variation in species coexistencebetween different vertical layers on the 4 ha scale of thewarm-temperate evergreen broad-leaved forests. Moreover, it was found bycomparing with three different forest types that interspecific competition ismore intense in warm-temperate forests than in cool-temperate or sub-borealforests. We conclude that, compared to cool-temperate or sub-boreal forests(which have little interspecific competition), warm-temperate forests supportmore complex interspecific relationships and species-specific habitatpreferences that result in higher species diversity.     

Plant regeneration from cytoplasmic hybrids of rice (Oryza sativa L.)

Summary We obtained cybrid plants by electrofusing -irradiated protoplasts of a cytoplasmic male-sterile line A-58 CMS (Oryza sativa L.) and iodoacetamide (IOA)-treated protoplasts of the fertile (normal) rice cultivar Fujiminori. The cybridity of the plants was confirmed by mitochondrial (mt) DNA restriction endonuclease, and plasmid-like DNA analyses, and by isozyme, cytological and morphological investigations. The chromosome number of the cybrid plants is 24.