Mechanisms of signalling-memory governing progression through the eukaryotic cell cycle

As cells pass through each replication–division cycle, they must be able to postpone further progression if they detect any threats to genome integrity, such as DNA damage or misaligned chromosomes. Once a ‘decision’ is made to proceed, the cell unequivocally enters into a qualitatively different biochemical state, which makes the transitions from one cell cycle phase to the next switch-like and irreversible. Each transition is governed by a unique signalling network; nonetheless, they share a common characteristic of bistable behaviour, a hallmark of molecular memory devices. Comparing the cell cycle signalling mechanisms acting at the restriction point, G1/S, G2/M and meta-to-anaphase transitions, we deduce a generic network motif of coupled positive and negative feedback loops underlying each transition.     

The stoichiometry of nitrogen and phosphorus spiralling in heterotrophic and autotrophic streams

1. Nutrient spiralling provides a conceptual framework and a whole‐system approach to investigate ecosystem responses to environmental changes. We use spiralling metrics to examine how the coupling of nitrogen and phosphorus uptake varies between streams dominated by either heterotrophic (i.e. bacteria‐dominated) or autotrophic (algal‐dominated) microbial communities. 2. Algae generally exhibit greater capacity to store nutrients than bacteria because of differences in cellular structures. These differences led us to hypothesise that the uptake of N and P in heterotrophic ecosystems should have reduced stoichiometric variation in response to changes in supply N : P compared to autotrophic ecosystems when assimilation dominates nutrient uptake. 3. To test this hypothesis, we used an array of serial nutrient additions in several streams in the South Fork Eel River watershed in Northern California. In one set of experiments, N and P were added alone and simultaneously in separate experiments to two small, heterotrophic streams to assess uptake rates and interactions between nutrient cycles. In a second set of experiments, N and P were added simultaneously at a range of N : P in one heterotrophic and one autotrophic stream to assess differences in uptake responses to changes in supply N : P. 4. Results of these experiments suggest two important conclusions. First, increased N supply significantly shortened P uptake lengths, while P addition had little impact on N uptake in both streams, indicating that uptake of non‐limiting nutrients is tightly coupled to the availability of the limiting element. Second, changes in P uptake and uptake ratios (U_N : U_P) with increased supply N : P supported our hypothesis that heterotrophic streams are more homeostatic in their responses to changes in nutrient supply than autotrophic streams, suggesting that physiological controls on nutrient use scale up to influence ecosystem‐scale patterns in nutrient cycling.     

A model for a network of phosphorylation-dephosphorylation cycles displaying the dynamics of dominoes and clocks

We consider a model for a network of phosphorylation-dephosphorylation cycles coupled through forward and backward regulatory interactions, such that a protein phosphorylated in a given cycle activates the phosphorylation of a protein by a kinase in the next cycle as well as the dephosphorylation of a protein by a phosphatase in a preceding cycle. The network is cyclically organized in such a way that the protein phosphorylated in the last cycle activates the kinase in the first cycle. We study the dynamics of the network in the presence of both forward and backward coupling, in conditions where a threshold exists in each cycle in the amount of protein phosphorylated as a function of the ratio of kinase to phosphatase maximum rates. We show that this system can display sustained (limit-cycle) oscillations in which each cycle in the pathway is successively turned on and off, in a sequence resembling the fall of a series of dominoes. The model thus provides an example of a biochemical system displaying the dynamics of dominoes and clocks (Murray & Kirschner, 1989). It also shows that a continuum of clock waveforms exists of which the fall of dominoes represents a limit. When the cycles in the network are linked through only forward (positive) coupling, bistability is observed, while in the presence of only backward (negative) coupling, the system can display multistability or oscillations, depending on the number of cycles in the network. Inhibition or activation of any kinase or phosphatase in the network immediately stops the oscillations by bringing the system into a stable steady state; oscillations resume when the initial value of the kinase or phosphatase rate is restored. The progression of the system on the limit cycle can thus be temporarily halted as long as an inhibitor is present, much as when a domino is held in place. These results suggest that the eukaryotic cell cycle, governed by a network of phosphorylation-dephosphorylation reactions in which the negative control of cyclin-dependent kinases plays a prominent role, behaves as a limit-cycle oscillator impeded in the presence of inhibitors. We contrast the case where the sequence of domino-like transitions constitutes the clock with the case where the sequence of transitions is passively coupled to a biochemical oscillator operating as an independent clock.     

中国东北样带(NECT)土壤碳、氮、磷的梯度分布及其与气候因子的关系

 以中国东北样带(NECT)为依托,基于沿样带的野外观测和土壤实测数据,分析了沿样带的土壤碳、氮、磷的空间分布格局及其与年降水、年均温之间的关系。结果表明：样带内土壤有机碳、土壤全氮、土壤有效氮、土壤全磷、土壤有效磷沿经度均呈现出东高西低的分布趋势;降水量和温度对土壤碳、氮、磷的作用强度顺序分别为土壤有效氮、土壤有机碳、土壤全氮、土壤全磷和土壤有效磷;并建立了土壤有机碳、土壤全氮、土壤有效氮、土壤全磷、土壤有效磷与年降水、年均温之间的多项式回归方程,为样带陆地碳收支评估及养分循环提供基础资料。     

Microalgae cultivation in air-lift reactors: modeling biomass yield and growth rate as a function of mixing frequency

The slow development of microalgal biotechnology stems from the failure in the design of large-scale photobioreactors where light energy is efficiently utilized. Due to the light gradient inside the reactor and depending on the mixing properties, algae are subjected to certain light/dark cycles where the light period is characterized by a light gradient. These light/dark cycles will determine productivity and biomass yield on light energy. Air-lift reactors can be used for microalgae cultivation and medium-frequency light/dark cycles will be found in these systems. Light/dark cycles are associated with two basic parameters: first, the light fraction, i.e., the ratio between the light period and the cycle time and second, the frequency of the light/dark cycle. In the present work, light/dark cycles found in air-lift reactors were simulated taking into account the light gradient during the light period. The effect of medium-frequency cycle time (10-100 s) and light fraction (0.1-1) on growth rate and biomass yield on light energy of the microalgae Dunaliella tertiolecta was studied. The biomass yield and growth rates were mainly affected by the light fraction, while cycle time had little influence. Response surface methodology was used and a statistical model describing the effect of light fraction and cycle time on growth rate and biomass yield on light energy was developed. The use of the model as a reactor design criterion is discussed.     

Control models of cell cycle transit, exit, and arrest

Several distinct cycles mediate the events which occur between one cell division and the next. In micro-organisms there are generally two cycles. One governs biomass growth, the other DNA synthesis and cell division. In higher eukaryotes there can be as many as four distinct cycles, with growth, DNA synthesis, cell division, and nuclear division each possessing its own functional sequence of events. These cycles are controlled and coordinated by several different regulatory mechanisms. Restriction points are specific steps in the cycle whose completion is governed by external regulatory agents. One set of restriction points requires nutrients and growth hormones for step completion. Another set serves as receptors for differentiating factors which cause cycle arrest and initiate cellular differentiation. There is currently a debate as to whether restriction point inhibition involves permanent arrest or temporary arrest with a stochastic arrested-state residence time controlled by a transition probability mechanism. Tissue sizing is a process of negative feedback inhibition mediated by intercellular communication via cell surface contact and the extracellular matrix. Sizers commonly operate throughout broad portions of the cycle and appear to cause a slowing of cycle transit velocity rather than arrest. Sizers are probably the major regulatory mechanism for cell growth under conditions of nutrient and growth factor excess. They also generate compensatory proliferation following wounding or cell death. A growing body of evidence suggests that both the transit velocity, with which cells move through their several cycles, and the coordination of the cycles are controlled by intracellular regulatory mechanisms which behave as biological oscillators. These oscillators trigger complex sequences of events such as DNA synthesis and cell division.     

Succession May Maintain High Leaf Area: Sapwood Ratios and Productivity in OldSubalpine Forests

Old forests are generally believed to exhibit low net primary productivity (NPP) and therefore to be insignificant carbon sinks. This relationship between age and NPP is based, in part, on the hypothesis that the biomass of respiratory tissues such as sapwood increases with age to a point where all photosynthate is required just to maintain existing tissue. However, this theoretical connection between respiration:assimilation ratios and forest productivity is based on age-dependent trends in the sapwood:leaf ratios of individual trees and even-aged stands; it does not take into account such processes in natural forests as disproportional increases in shade-tolerant species over time and multiple-age cohorts. Ignoring succession and structural complexity may lead to large underestimates of the productivity of old forests and inaccurate estimates of the ages at which forest productivity declines. To address this problem, we compared biomass allocation and productivity between whitebark pine, a shade-intolerant, early-successional tree species, and subalpine fir, a shade-tolerant, late-successional species, by harvesting 14 whitebark pines and nine subalpine firs that varied widely in dbh and calculating regression models for dbh vs annual productivity and biomass allocation to leaves, sapwood, and heartwood. Late-successional subalpine fir allocated almost twice as much biomass to leaves as early-successional whitebark pine. Subalpine firs also had a much lower allocation to sapwood and higher growth rates across all tree sizes. We then modeled biomass allocation and productivity for 12 natural stands in western Montana that were dominated by subalpine fir and whitebark pine varying in age from 67 to 458 years by applying the regressions to all trees in each stand. Whole-stand sapwood:leaf ratios and stand productivity increased asymptotically with age. Sapwood:leaf ratios and productivity of whitebark pine in these stands increased for approximately 200–300 years and then decreased slowly over the next 200 years. In contrast, sapwood:leaf ratios of all sizes of subalpine fir were lower than those of pine and productivity was higher. As stands shifted in dominance from pine to fir with age, subalpine fir appeared to maintain gradually increasing rates of whole-forest productivity until stands were approximately 400 years old. These results suggest that forests such as these may continue to sequester carbon for centuries. If shade-tolerant species that predominate late in succession maintain high assimilation-to-respiration ratios in other forests, we may be underestimating production in old forests, and current models may underestimate the importance of mature forests as carbon sinks for atmospheric CO₂ in the global carbon cycle. Received 16 February 1999; accepted 24 November 1999.     

Presence of abnormally high incidences of sister chromatid exchanges in three successive cell cycles in Bloom's syndrome lymphocytes

The frequencies of sister chromatid exchanges (SCEs) were examined in phytohaemagglutinin-stimulated blood lymphocytes of a normal individual, a Bloom's syndrome heterozygote (bl/+), and two Bloom's syndrome homozygotes (bl/bl). To determine the baseline SCE frequencies, lymphocytes were cultured with various concentrations of 5-bromodeoxyuridine (BrdUrd) for two cell cycles. The incidence of SCEs per two cell cycles inbl/bl lymphocytes levelled off at BrdUrd concentrations below 10 g/ml while that in normal andbl/+ lymphocytes stayed constant below 7.5 g/ml. The baseline SCE frequency in bl/bl cells was ten times higher than that in normal andbl/+ cells. At BrdUrd concentrations above 15 g/ml, SCEs inbl/bl cells were induced more frequently than in normal andbl/+ cells. These results indicate that at low concentrations BrdUrd has a minimal effect on the induction of SCEs in all individuals, while at higher concentrations the BrdUrd incorporated inbl/bl cells has a larger effect than that in normal andbl/+ cells. To elucidate the effect of BrdUrd incorporated into the daughter and parental DNA strands on SCE induction, SCEs occurring during each cell cycle were examined separately in three-way or two-way differentially stained, third-cycle metaphases. The incidence of SCEs detected in each cell cycle at 5 g/ml BrdUrd was constant in all individuals and the rates of SCEs in each cell cycle inbl/bl cells were remarkably higher than those observed in normal andbl/+ cells. These findings strongly indicate that most of the abnormally increased SCEs in thebl/bl cells used in our study occurred independently of any effect of BrdUrd incorporated into both the daughter and parental DNA strands. In addition, an abnormal response ofbl/bl cells to BrdUrd was not found for cell cycle progression or chromosomal aberration induction. Thus, the bl/bl cells did not exhibit an abnormal hypersensitivity to BrdUrd. From these results, it seems quite probable that the abnormally increased SCEs in thebl/bl lymphocytes used here were spontaneous.     

An improved dynamic model of photosynthesis for estimation of carbon gain in sunfleck light regimes

A dynamic model of leaf photosynthesis for C₃ plants has been developed for examination of the role of the dynamic properties of the photosynthetic apparatus in regulating CO₂ assimilation in variable light regimes. The model is modified from the Farquhar-von Caemmerer-Berry model by explicitly including metabolite pools and the effects of light activation and deactivation of Calvin cycle enzymes. It is coupled to a dynamic stomatal conductance model, with the assimilation rate at any time being determined by the joint effects of the dynamic biochemical model and the stomatal conductance model on the intercellular CO₂ pressure. When parametrized for each species, the model was shown to exhibit responses to step changes in photon flux density that agreed closely with the observed responses for both the understory plant Alocasia macrorrhiza and the crop plant Glycine max. Comparisons of measured and simulated photosynthesis under simulated light regimes having natural patterns of lightfleck frequencies and durations showed that the simulated total for Alocasia was within ±4% of the measured total assimilation, but that both were 12–50% less than the predictions from a steady–state solution of the model. Agreement was within ±10% for Glycine max, and only small differences were apparent between the dynamic and steady–state predictions. The model may therefore be parametrized for quite different species, and is shown to reflect more accurately the dynamics of photosynthesis than earlier dynamic models.     

A comprehensive review of the phenology of <Emphasis Type="Italic">Pygoscelis</Emphasis> penguins

Phenology, the study of stages within the life cycles of plants and animals, has served as a proxy for weather and climate throughout human history, but has only recently become its own field of environmental science. Phenological constraints are particularly demanding in avian species because of the necessity of matching chick provisioning with high food abundance, while allocating time for migration. Within avian species, seabird phenology is of particular interest because many seabird species exhibit colonial breeding behaviour. Penguins, representing roughly 90 % of the biomass in the Southern Ocean, are well studied in the context of population dynamics, prey abundance, and phenology. Here I review the annual cycles of Pygoscelis penguins, a genus including gentoo (Pygoscelis papua), chinstrap (Pygoscelis antarctica), and Adélie (Pygoscelis adeliae) penguins, to better understand what is known about their phenology, what causes known changes, and how their phenology influences fitness. Major differences exist between species, particularly in relation to winter migration, incubation shifts, and the timing of breeding. Even with the numerous studies examining phenology in Pygoscelis penguins, large gaps in our understanding of plasticity in the annual cycle remain. In particular, certain phases are neglected because they are logistically difficult to record or have erroneously been ignored. In addition, temporally, large gaps exist in our understanding of phenology, where studies have not been updated in over 20 years at a particular field site. Because phenology does vary greatly between years, depending on the colony, when possible, researchers should strive to update phenological records by recording the dates of phases each year.     

宝天曼自然保护区锐齿栎林生态系统营养元素循环

对河南内乡宝天曼自然保护区内 35年生的天然次生锐齿栎林生态系统的营养元素循环进行研究 ,结果表明 :所测定系统中的 N、P、K、Ca、Mg、Fe、Na、Mn、Zn、Cu1 0种营养元素积累总量为 1 0 387.894kg·hm- 2 ,土壤库贮量 8880 .70 9kg·hm- 2 ,占 85 .49% ;植物体贮量 1 5 0 7.1 82 kg·hm- 2 ,占 1 4.5 1 % ,其中活植物体占 90 .5 6% ,凋落物占 9.44%。系统中 1 0种营养元素年吸收量 2 0 7.5 4 5 kg· hm- 2 ,年存留量1 0 5 .2 85 kg· hm- 2 ,年归还量 1 0 1 .65 1 kg·hm- 2 ,年积累速率为 77.8986kg·hm- 2 ;年归还量占年吸收量48.98% ,表明系统中营养元素的循环处于良好的平衡状态。 1 0种营养元素的平均利用系数为 0 .1 85 ,平均周转期为 9.98a。其中 P、N、Mg、Na、Mn的周转期较短为 4～ 8a,K、Ca、Fe、Cu周转期较长为 1 0～ 1 6a,Zn的周转期最长为 1 7.4a。     

Nitrogen budget under rotational bush fallow agriculture (jhum) at higher elevations of Meghalaya in north-eastern India

Summary The nitrogen budge of rotational bush fallow agriculture (jhum) was investigated at higher elevations of Meghalaya in north-eastern India under 15, 10 and 5 year fallow cycles (the intervening fallow period between one or two croppings on the same site). Nitrogen depletion was affected by initial stocks in the soil and vegetation compartment at the time of slash and burn as well as the rate at which this was lost during the subsequent land use. While nitrogen losses due to the burn was more severe under longer cycles compared to the 5 year cycle the losses through sediment and water was more under a 15 year cycle compared to 10 and 5 year cycles. Transfer of nitrogen from soil to the weed biomass increased with shortening of the fallow cycle. The positive role of weeds in conservation of nitrogen in their biomass and subsequent release through organic manure into the agriculture system has been highlighed. Under a short fallow cycle of 5 years, considered on a time scale of 15 years, the soil nitrogen was depleted to a very low level compared to a 15 year cycle, suggesting that a 5 year cycle as prevalent today is not viable from the point of view of nitrogen economy.     

Bottom-up regulation of a pelagic community through spatial aggregations

The importance of spatial pattern in ecosystems has long been recognized. However, incorporating patchiness into our understanding of forces regulating ecosystems has proved challenging. We used a combination of continuously sampling moored sensors, complemented by shipboard sampling, to measure the temporal variation, abundance and vertical distribution of four trophic levels in Hawaii's near shore pelagic ecosystem. Using an analysis approach from trophic dynamics, we found that the frequency and intensity of spatial aggregations-rather than total biomass-in each step of a food chain involving phytoplankton, copepods, mesopelagic micronekton and spinner dolphins (Stenella longirostris) were the most significant predictors of variation in adjacent trophic levels. Patches of organisms had impacts disproportionate to the biomass of organisms within them. Our results are in accordance with resource limitation-mediated by patch dynamics-regulating structure at each trophic step in this ecosystem, as well as the foraging behaviour of the top predator. Because of their high degree of heterogeneity, ecosystem-level effects of patchiness such as this may be common in many pelagic marine systems.     

Changes in junctional communication associated with cell cycle arrest and differentiation of trochoblasts in embryos of Patella vulgata

In early embryos of molluscs, different clones of successively determined trochoblasts differentiate into prototroch cells and together contribute to the formation of a ciliated ring of cells known as the prototroch. Trochoblasts differentiate after cell cycle arrest, which occurs two cell cycles after the commitment of their stem cell. To study the changes of junctional communication in embryos of Patella vulgata in relation to commitment, cell cycle arrest, and differentiation of the trochoblasts, we have monitored electrical coupling as well as transfer of fluorescent dyes. The appearance of dye coupling in embryos of Patella occurs after the fifth cleavage (at the 32-cell stage), when the cell cycles of all embryonic cells become asynchronous and longer. At the 32- and 64-cell stages all cells are well coupled. However, after the 72-cell stage dye transfer to or from any cell of the four interradial clones of four primary trochoblasts becomes abruptly reduced, whereas electrical coupling between these cells and the rest of the embryo can still be detected. From scanning electron microscopical analysis of the cell pattern we conclude that this change in gap junctional communication coincides with cell cycle arrest and with the development of cilia in all four clones of primary trochoblasts. Similarly, after the 88-cell stage the four radial clones of accessory trochoblasts stop dividing, reduce cell coupling, and become ciliated. By the formation of the prototroch, the embryo becomes subdivided into an anterior (pretrochal) and a posterior (posttrochal) domain which will develop different structures of the adult. At the 88-cell stage, the cells within each of these two domains remain well coupled and form two different communication compartments that are separated from each other by the interposed ring of uncoupled trochoblasts. The relations among control of cell cycle, changes in junctional communication, and differentiation are discussed.     

基于植株拓扑结构的生物量分配的玉米虚拟模型

依据植物结构—功能相互作用机理,建立了能模拟玉米生长发育与形态结构建成的虚拟模型。该模型的重要部分为基于植株拓扑结构的生物量分配模块。叙述了该模块的构建原理,以2000年田间试验数据提取了玉米的发育、生物量生产和生物量分配参数。模型模拟了2001年的玉米生长发育与生物量分配过程,模拟结果与田间试验结果比较吻合。应用该模型模拟了2001年玉米不同生育阶段植株的生物量分配和各器官生物量积累动态。     

Tracking dietary transitions in weanling baboons (Papio hamadryas anubis) using strontium/calcium ratios in enamel

Strontium and calcium are incorporated into developing teeth in a manner that reflects changing physiological concentrations in the body. A new model predicts changes in strontium/calcium (Sr/Ca) ratios in response to dietary transitions experienced at birth and during the weaning period. Microsampling of longitudinal thin sections of tooth enamel using laser ablation inductively coupled plasma mass spectrometry provides a basis for the systematic evaluation of variation in Sr/Ca ratios within the tooth crown. Incremental growth markers in enamel are used to determine the age of onset of enamel mineralization at each sampling point. Thin sections of 5 teeth from 2 wild-caught baboons (Papio hamadryas anubis) were systematically analysed using this technique. Intra- and intertooth analyses of Sr/Ca ratios reveal a pattern of dietary development during the period of enamel formation that is consistent with observational data on the timing of weaning behaviour in anubis baboons.     

Antisense inhibition of the iron-sulphur subunit of succinate dehydrogenase enhances photosynthesis and growth in tomato via an organic acid-mediated effect on stomatal aperture

Transgenic tomato (Solanum lycopersicum) plants expressing a fragment of the Sl SDH2-2 gene encoding the iron sulfur subunit of the succinate dehydrogenase protein complex in the antisense orientation under the control of the 35S promoter exhibit an enhanced rate of photosynthesis. The rate of the tricarboxylic acid (TCA) cycle was reduced in these transformants, and there were changes in the levels of metabolites associated with the TCA cycle. Furthermore, in comparison to wild-type plants, carbon dioxide assimilation was enhanced by up to 25% in the transgenic plants under ambient conditions, and mature plants were characterized by an increased biomass. Analysis of additional photosynthetic parameters revealed that the rate of transpiration and stomatal conductance were markedly elevated in the transgenic plants. The transformants displayed a strongly enhanced assimilation rate under both ambient and suboptimal environmental conditions, as well as an elevated maximal stomatal aperture. By contrast, when the Sl SDH2-2 gene was repressed by antisense RNA in a guard cell-specific manner, changes in neither stomatal aperture nor photosynthesis were observed. The data obtained are discussed in the context of the role of TCA cycle intermediates both generally with respect to photosynthetic metabolism and specifically with respect to their role in the regulation of stomatal aperture.     

Identifying genes from up-down properties of microarray expression series

MOTIVATION: We consider any collection of microarrays that can be ordered to form a progression; for example, as a function of time, severity of disease or dose of a stimulant. By plotting the expression level of each gene as a function of time, or severity, or dose, we form an expression series, or curve, for each gene. While most of these curves will exhibit random fluctuations, some will contain a pattern, and these are the genes that are most likely associated with the quantity used to order them. RESULTS: We introduce a method of identifying the pattern and hence genes in microarray expression curves without knowing what kind of pattern to look for. Key to our approach is the sequence of ups and downs formed by pairs of consecutive data points in each curve. As a benchmark, we blindly identified genes from yeast cell cycles without selecting for periodic or any other anticipated behaviour. CONTACT: tmf20@cam.ac.uk SUPPLEMENTARY INFORMATION: The complete versions of Table 2 and Figure 4, as well as other material, can be found at http://www.lps.ens.fr/~willbran/up-down/ or http://www.tcm.phy.cam.ac.uk/~tmf20/up-down/     

Isotopic tracing reveals single-cell assimilation of a macroalgal polysaccharide by a few marine Flavobacteria and Gammaproteobacteria

Algal polysaccharides constitute a diverse and abundant reservoir of organic matter for marine heterotrophic bacteria, central to the oceanic carbon cycle. We investigated the uptake of alginate, a major brown macroalgal polysaccharide, by microbial communities from kelp-dominated coastal habitats. Congruent with cell growth and rapid substrate utilization, alginate amendments induced a decrease in bacterial diversity and a marked compositional shift towards copiotrophic bacteria. We traced ¹³C derived from alginate into specific bacterial incorporators and quantified the uptake activity at the single-cell level, using halogen in situ hybridization coupled to nanoscale secondary ion mass spectrometry (HISH-SIMS) and DNA stable isotope probing (DNA-SIP). Cell-specific alginate uptake was observed for Gammaproteobacteria and Flavobacteriales, with carbon assimilation rates ranging from 0.14 to 27.50 fg C µm⁻³ h⁻¹. DNA-SIP revealed that only a few initially rare Flavobacteriaceae and Alteromonadales taxa incorporated ¹³C from alginate into their biomass, accounting for most of the carbon assimilation based on bulk isotopic measurements. Functional screening of metagenomic libraries gave insights into the genes of alginolytic Alteromonadales active in situ. These results highlight the high degree of niche specialization in heterotrophic communities and help constraining the quantitative role of polysaccharide-degrading bacteria in coastal ecosystems.Subject terms: Water microbiology, Microbial ecology, Marine microbiology, Biogeochemistry, Microbial ecology     

Computer modelling and experimental evidence for two steady states in the photosynthetic Calvin cycle.

We present observations of photosynthetic carbon dioxide assimilation, and leaf starch content from genetically modified tobacco (Nicotiana tabacum) plants in which the activity of the Calvin cycle enzyme, sedoheptulose-1,7-bisphosphatase, is reduced by an antisense construct. The measurements were made on leaves of varying ages and used to calculate the flux control coefficients of sedoheptulose-1,7-bisphosphatase over photosynthetic assimilation and starch synthesis. These calculations suggest that control coefficients for both are negative in young leaves, and positive in mature leaves. This behaviour is compared to control coefficients obtained from a detailed computer model of the Calvin cycle. The comparison demonstrates that the experimental observations are consistent with bistable behaviour exhibited by the model, and provides the first experimental evidence that such behaviour in the Calvin cycle occurs in vivo as well as in silico.