Is there a future for the Cactaceae genera Copiapoa,Eriosyce and Eulychnia? A status report of a prickly situation

Many of Chile’s iconic cactus species are threatened by human activities and global change. In order to safeguard them from extinction, both in situ and ex situ conservation actions are urgently needed. In this paper, an overview is given of the in situ and ex situ conservation status of the mainly Chilean cactus genera Copiapoa, Eriosyce and Eulychnia, including a worldwide survey of living ex situ collections of the species of these genera. From our results, we can conclude that although the threats to Chile’s remarkable biodiversity are now recognized as an environmental problem, and efforts are underway to protect the threatened endemic flora, many of the most threatened species are currently not protected in situ. Although a higher percentage of living accessions of Copiapoa, Eriosyce and Eulychnia in ex situ collections are of known wild origin compared to results of previous studies on other plant groups, the number of available accessions is insufficient to adequately preserve the genetic diversity of the threatened species. Prospects to upscale both in situ and ex situ conservation of the studied genera are discussed.     

森林遗传资源保护研究进展

森林遗传资源的保护事关现代及后代的利益,已引起全球的极大关注,自70年代以来,就地保护与迁地保护作为主要的战略在森林遗传资源保护实践中使用。一般来说森林遗传资源的就地保护可以通过建立自然保护区来实现。迁地保护主要包括种子库、田间基因库、种子园及细胞或组织培养等技术。就地保护和迁地保护应当相互补充,两者结合使用是保存森林遗传多样性的有效方法。对森林遗传资源保护战略的选择以及因贸易而濒危的热带材用树及其保护问题也作了简要评述。     

注意植物迁地保护中的遗传风险

稀有濒危植物迁地保护的长期目标之一就是要保护物种的遗传多样性和进化潜力。介绍了稀有濒危植物在植物园迁地保护过程中存在的一系列遗传风险。由于引种或取样的不足,容易导致被保存的物种缺乏足够的遗传代表性;盲目的引种、不合理的定植以及材料的来源不清则会导致稀有濒危植物的遗传混杂、近交衰退或杂交衰退;人为选择和生长环境的改变也容易造成濒危物种对迁地保护的遗传适应。在实际的迁地保护工作中,这些遗传风险往往被忽视。植物迁地保护中遗传风险将严重影响稀有濒危物种的回归和恢复。植物园应当重视濒危植物的遗传管理,以降低或避免迁地保护中的遗传风险。Abstract: Conserving genetic diversity of rare and endangered species and their evolutionary potential is one of the long-term goals of ex-situ conservation. Some potential genetic risks in ex-situ conservation in botanical gardens are presented. The preserved species may lack genetic representativity because of poor sampling. Inappropriate plantations, inadequate records and unclear kinships jeopardize endangered species to genetic confusion, inbreeding depression or outbreeding depression. Artificial selection and habitat conversion also potentially result endangered plants in adapting to ex-situ conservation, which had been usually overlooked. All the genetic risks can decrease the success of reintroduction and recovery. Therefore, appropriate genetic management should be carried out in botanical gardens to decrease or avoid genetic risks in ex-situ conservation.     

Do living ex situ collections capture the genetic variation of wild populations? A molecular analysis of two relict tree species,Zelkova abelica and Zelkova carpinifolia

Botanic gardens and arboreta, particularly in regions where iconic relict trees naturally occur, play a vital role in the conservation of these species. Maintaining well-managed living ex situ collections of rare and threatened relict tree species provides an immediate insurance policy for the future species conservation. The aim of this research was to investigate the origin, representativeness and genetic diversity of relict trees kept in botanic gardens and arboreta. We used as a model two ecologically and biogeographically distinct members of the prominent relict genus Zelkova (Ulmaceae), which survived the last glaciation in disjunct and isolated refugial regions: Z. carpinifolia in Transcaucasia and Z. abelicea endemic to Crete (Greece) in the Mediterranean. Our study revealed substantial differences in the genetic diversity and the origin of living ex situ collections of the two investigated taxa. The living ex situ collections of Z. carpinifolia have relatively high representativeness compared with the global genetic variability of natural stands identified in a previous study. In contrast, Z. abelicea, which possesses an extraordinarily high genetic variability in natural populations, is clearly underrepresented in botanic garden collections. Moreover, all Z. abelicea trees investigated in this study most probably originated from a single region, the Levka Ori in western Crete. Thus, the ex situ conservation of Z. abelicea requires major planning and coordination efforts, including the establishment of well-documented collections in botanic gardens in Greece and especially on Crete. New living ex situ collections should be created using plant material collected from all of the mountain regions where Z. abelicea still occurs. Our study highlights the need for re-evaluating the existing living ex situ collections of trees and the development of new strategies for future conservation efforts in botanic gardens and arboreta. The coordination of conservation efforts between gardens must be enhanced to prioritize actions for the most threatened relict tree species.     

Genetic diversity in the US ex situ populations of the endangered Puerto Rican Boa,Chilabothrus inornatus

The Puerto Rican Boa (Chilabothrus inornatus) was placed on the US Endangered Species List in 1970. Progress has been made since to clarify the recovery status of this species, though the design of a new recovery plan must include information regarding genetic variation within and among populations of this species. While measures of genetic diversity in wild populations of this species are finally becoming available, relative genetic diversity represented in ex situ populations is unknown, which hampers efforts to develop an ex situ species management plan. Here, we provide an analysis of genetic diversity in US public and private collections (zoos and breeders) using mitochondrial sequence data and five highly polymorphic nuclear microsatellite loci. We analyzed 50 boas from the US ex situ population and determined overall genetic diversity and relatedness among these individuals. We then compared these data to mitochondrial and microsatellite data obtained from 176 individuals from wild populations across the native range of the species. We found little inbreeding and a large amount of retained genetic diversity in the US ex situ population of C. inornatus relative to wild populations. Genetic diversity in the ex situ population is similar to that found in wild populations. Ours is only the second explicit attempt to characterize genetic diversity at the molecular level in ex situ populations of boid snakes. We anticipate that these results will inform current breeding strategies as well as offer additional information that will facilitate the continuation of ex situ conservation breeding or management in boas.     

Morphological and phenological comparisons of two Hopi maize varieties conserved in situ and ex situ

Over the last twenty-five years, crop genetic resources (CGR) have been preserved in genebanks around the world for use by formal plant breeders. Recently conservation of folk crop varieties for direct use by the farmer-breeders of traditional agricultural communities has been suggested as another purpose for CGR conservation. While both in and ex situ CGR conservation programs have been proposed to meet the needs of formal plant breeders and farming communities, the needs and goals of the two groups are different. Formal breeders seek maximum allelic diversity while farmer-breeders are interested in both diversity and population structure that provide local adaptation. Based on the morphological and phenological data analyzed for this study of two Hopi maize varieties conserved in and ex situ, it appears that both genetic shift and genetic drift have occurred ex situ, and that populations conserved ex situ are different from those maintained in situ. These findings suggest that CGR conservation strategies must be re-evaluated in light of the specific conservation goals that are sought.     

Quasi in situ: a bridge between ex situ and in situ conservation of plants

Plant conservation urgently needs a concept that would unify different aspects of population viability as parts of conservation methodology. Such unification is especially lacking for ex situ conservation. We introduce a novel conservation approach in which ex situ collections maintained in natural or semi-natural environment and preserving both neutral and adaptive genetic diversity are a part of a complementary ex situ–in situ conservation strategy. Our approach is the first that explicitly takes into account ecologically significant (i.e. adaptive) variation of plants in both ex situ and in situ conservation actions. Using this approach we provide detailed guidelines for (1) representative sampling of the populations; (2) collection maintenance; and (3) utilization for in situ actions.     

Genetic variation and conservation assessment of Chinese populations of Magnolia cathcartii (Magnoliaceae), a rare evergreen tree from the South-Central China hotspot in the Eastern Himalayas

Nine natural populations of the rare evergreen tree Magnolia cathcartii (Magnoliaceae) were sampled across its natural range, and amplified fragment length polymorphism (AFLP) markers were used to assess genetic variation within and among populations. Three ex situ populations were also surveyed to determine whether conservation plantings include the entire genetic diversity of the species. Genetic diversity within the natural populations was very low (0.122 for Nei’s gene diversity), and the southeast populations had the highest diversity. The ex situ populations had a lower diversity than the mean diversity for all populations, and none of the ex situ populations reached the levels of diversity found in their source populations. Genetic differentiation was high among natural populations (G _st = 0.247), and an isolation-by-distance pattern was detected. Habitat fragmentation, restricted gene flow, and geitonogamy are proposed to be the primary reasons for the low genetic diversity and high genetic differentiation. More protection is needed, especially for the southeast populations, which possess the highest numbers of unique alleles according to AFLP fragment analyses. The ex situ program was a good first step towards preserving this species, but the current ex situ populations preserve only a limited portion of its genetic diversity. Future ex situ efforts should focus on enhancing the plantings with individuals from southeastern Yunnan.     

广西野生稻保护进展与思考

论述了野生稻保护的意义;原生境保护、异生境保存所取得的主要进展;提出存在的问题,以及今后发展的思路。     

Gap analyses of priority wild relatives of food crop in current ex situ and in situ conservation in Indonesia

Conservation programmes are always limited by available resources. Careful planning is therefore required to increase the efficiency of conservation and gap analysis can be used for this purpose. This method was used to assess the representativeness of current ex situ and in situ conservation actions of 234 priority crop wild relatives (CWR) in Indonesia. This analysis also included species distribution modelling, the creation of an ecogeographical land characterization map, and a complementarity analysis to identify priorities area for in situ conservation and for further collecting of ex situ conservation programmes. The results show that both current ex situ and in situ conservation actions are insufficient. Sixty-six percent of priority CWRs have no recorded ex situ collections. Eighty CWRs with ex situ collections are still under-represented in the national genebanks and 65 CWRs have no presence records within the existing protected area network although 60 are predicted to exist in several protected areas according to their potential distribution models. The complementarity analysis shows that a minimum of 61 complementary grid areas (complementary based on grid cells) are required to conserve all priority taxa and 40 complementary protected areas (complementary based on existing protected areas) are required to conserve those with known populations within the existing in situ protected area network. The top ten of complementary protected areas are proposed as the initial areas for the development of CWR genetic reserves network in Indonesia. It is recommended to enhanced coordination between ex situ and in situ conservation stakeholders for sustaining the long term conservation of CWR in Indonesia. Implementation of the research recommendations will provide for the first time an effective conservation planning of Indonesia’s CWR diversity and will significantly enhance the country’s food and nutritional security.

     

High interpopulation genetic differentiation and unidirectional linear migration patterns in Myricaria laxiflora (Tamaricaceae), an endemic riparian plant in the Three Gorges Valley of the Yangtze River

Myricaria laxiflora is restricted to the riverbanks of the Yangtze River valley and will be completely lost owing to the construction of the Three Gorges Dam. Genetic diversity and structure of nine natural and one ex situ populations were investigated using amplified fragment length polymorphisms (AFLPs). A moderate level of gene diversity was found in natural populations, while the ex situ population had the highest. The F statistics calculated by different approaches consistently revealed a high genetic differentiation among natural populations, contributing >45% of the total gene diversity. The Bayesian-based analysis differentiated nine independent populations in accordance with the sites sampled. Estimates of gene flow by F(ST) and coalescent-based simulation analysis indicated a restricted recurrent gene exchange among populations (Nm = 0.290-0.401), whereas genetic distance-based clustering and coalescent-based assignment analyses revealed significant genetic isolation among populations. The migration pattern in M. laxiflora is best explained by a classical metapopulation model, but with a unique unidirectional direction underlined by hydrochoric force that drove dispersal of seeds and propagules from upstream toward downstream populations. Previous efforts in preserving genomic integrity in ex situ conservation were evaluated, and the results provide valuable information to formulate conservation guidelines for successfully reintroducing M. laxiflora to the wild.     

Genetic Evaluation of the Efficacy of In Situ and Ex Situ Conservation of <Emphasis Type="Italic">Parashorea chinensis</Emphasis> (Dipterocarpaceae) in Southwestern China

The majority of research in genetic diversity yields recommendations rather than actual conservation achievements. We assessed the efficacy of actual in situ and ex situ efforts to conserve Parashorea chinensis (Dipterocarpaceae) against the background of the geographic pattern of genetic variation of this species. Samples from seven natural populations, including three in a nature reserve, and one ex situ conservation population were studied. Across the natural populations, 47.8% of RAPD loci were polymorphic; only 20.8% on average varied at the population level. Mean population genetic diversity was 0.787 within natural populations and 1.410 for the whole species. Significant genetic differentiation among regions and isolation by distance were present on larger scales (among regions). AMOVA revealed that the majority of the among-population variation occurred among regions rather than among populations within regions. Regression analysis, Mantel test, principal coordinates analysis, and cluster analysis consistently demonstrated increasing genetic isolation with increasing geographic distance. Genetic differentiation within the region was quite low compared to that among regions. Multilocus spatial autocorrelation analysis of these three populations revealed random distribution of genetic variation in two populations, but genetic clustering was detected in the third population. The ex situ conserved population contained a medium level of genetic variation compared with the seven natural populations; it contained 77.1% of the total genetic variation of this species and 91% of the moderate to high frequency RAPD fragments (f > 0.05). Exclusive bands were detected in natural populations, but none were found in the ex situ conserved population. The populations protected in the nature reserve contained most of the genetic variation of the whole species, with 81.4% of the total genetic variation and 95.7% of the fragments with moderate to high frequency (f > 0.05) of this species conserved. The results show that the ex situ conserved population does not contain enough genetic variation to meet the need of release in the future, and that more extensive ex situ sampling in natural populations TY, NP, HK, and MG is needed. The in situ conserved population contains representative genetic variation to maintain long-term survival and evolutionary processes of P. chinensis.     

Ex situ conservation of plant diversity in Romania: A synthesis of threatened and endemic taxa

Romania hosts a relatively high species diversity, including 3,829 vascular and 979 non-vascular spontaneous plant taxa. Multiple national red lists exist, with the number of taxa assessed as threatened varying greatly between them, from 548 to 1,438, and with number of taxa assigned to a given threat category also varying between the different sources. A composite list including all taxa mentioned in at least one of the selected red listings from Romania is required in order to compensate for this lack of consensus and to assess their ex situ conservation status. In this study, we synthesized data from the national red lists and counted 1,220 spontaneous vascular plant species and 201 subspecies, of which 77 are endemic and 76 subendemic for Romania. In addition, 18 non-red-listed endemics and 14 subendemics have been added, bringing the total to 1,453 threatened and (sub)endemic plant taxa, representing almost 38% of the total native vascular flora of Romania. Despite the large network of protected areas in Romania, many taxa are still being threatened with extinction in the region mainly due to anthropogenic pressure. Several ex situ conservation measures have been employed to assure a more substantial buffer against plant extinction in the wild, supported by thorough and adequate conservation strategies and multiple means to reintroduce taxa back to their natural habitats. Consequently, our second aim was to evaluate the ex situ conservation status of these threatened and (sub)endemic plants from Romania, focussing on both conventional methods (cultivation in botanic gardens, seed banking) and biotechnological approaches (in vitro tissue culture, medium-term storage and cryostorage). Of the 1,453 taxa included in our list, 642 (44.2%) are conserved by ex situ approaches. Of these, 524 are harboured in the most important botanic gardens throughout Romania, while 156 are currently held in long-term seed banks locally or in the Millennium Seed Bank of the Royal Botanic Garden, Kew (UK). Conversely, only 64 taxa from the list are preserved at the national level through in vitro cultures, and cryopreservation protocols have been developed for only 8 taxa. Overall, more than half of the threatened and (sub)endemic vascular flora from Romania remains unprotected outside the classical in situ conservation measures. For red-listed bryophytes, only 0.6% are preserved in national ex situ collections. Moreover, some aspects related to population genetic studies and the genetic stability of ex situ conserved plants are also briefly discussed, as essential prerequisites for applied biodiversity conservation programs. Finally, considering the distribution range of targeted taxa, we included a synthesis of biotechnological approaches at both national and international level. Our study presents not only a first assessment of the ex situ conservation status of national red listed flora, but also, to our knowledge, the most comprehensive and updated overview of the rare, threatened and (sub)endemic taxa from Romania. This evaluation will provide a supporting tool for national decision- and policy-making actions for biodiversity conservation, using both in situ and ex situ approaches. We also highlight the need for an updated red list for the Romanian flora that accurately follows the IUCN assessment criteria and protocols.     

试论野生稻资源遗传多样性原生境保存

我国野生稻资源丰富,分布地域广阔,由于经济建设用地需要,近年来野生稻原生地遭到严重破坏,野生稻原生境保存已是十分紧迫的事情。本文论述了原生境保存的意义,原生境保存地的选择原则及设想,旨在提高全民生态保护意识,加强野生稻资源保护。     

三峡库区特有种疏花水柏枝的保护遗传学研究

采用超薄平板微型聚丙烯酰胺等电聚焦电泳方法对三峡库区特有种疏花水柏枝 (Myricarialaxiflora)的 13个自然居群和 1个人工迁地保护居群的等位酶遗传变异进行了初步研究。检测了 5个酶系统 ,得到 13个等位酶位点 ,遗传多样性及其遗传结构分析结果表明 :疏花水柏枝具有较高水平的遗传多样性 ,平均多态位点比率P =78.7% ,每位点平均等位基因数A =1.8,平均预期杂合度He=0 .317,高于中国植物特有种的平均水平 ,且群体中杂合基因型个体偏多 ;其遗传变异主要发生于居群内 ( 84.86 % ) ,居群间又存在一定的遗传分化 (Gst=0 .15 14) ,居群间平均基因流Nm =1.40 1,居群间遗传距离为 0 .0 0 2～ 0 .176 ;UPGMA聚类分析显示疏花水柏枝在三峡湖北境内的白水河—泄滩一带分为上游和下游 2个居群组 ;武汉植物园迁地保护的混合居群基本保育了其遗传多样性总水平。在分析讨论疏花水柏枝遗传多样性与其繁育系统、生境及其起源进化的关系的基础上 ,探讨了疏花水柏枝濒危的主要原因 ,推断其应为第四纪冰期影响后的古孑遗种。最后 ,在评价迁地保护成果的基础上 ,提出了今后进一步保育的策略。     

Effectiveness of in situ and ex situ conservation of crop diversity. What a Phaseolus vulgaris L. landrace case study can tell us

The effectiveness of in situ (on-farm) and ex situ conservation strategies to maintain total genetic diversity was assessed in a threatened Phaseolus vulgaris L. landrace. Farmer seed lots (subpopulations) were sampled initially and then after in situ and ex situ multiplication (two locations). The number of plants used in the ex situ multiplications (120) was much larger than that normally used in germplasm bank procedures and the farmer seed lots were kept separate. In situ, the landrace was multiplied by each farmer with the usual population size. Eighty plants from the initial population, the in situ and the two ex situ multiplications were individually tested using 26 microsatellite markers. Most of the genetic parameters showed a consistent decline in the ex situ populations compared with the in situ population, with a notable loss of less frequent alleles. The differentiation among the farmer subpopulations increased when the multiplication took place outside of the adaptation area. Although 120 plants were multiplied in each ex situ cycle, a bottleneck effect was present. In addition, tests for neutrality detected three loci that are involved in pathogen response and are potentially under selective effects. The diversity conservation and the management practices of autogamous landrace crops are discussed.     

Reproductive and Stress Response Hormones of the Critically Endangered Southern Muriqui (Brachyteles arachnoides: Atelidae) Under Captive Conditions

International Journal of Primatology - The Convention on Biological Diversity and the International Union for Conservation of Nature emphasize that ex situ conservation efforts are unavoidable....     

On the horns of a dilemma: molecular approaches refine ex situ conservation in crisis

Seven years into this new millennium, species and habitat loss continue at an accelerated rate. While there have been individual examples of conservation success, the trend towards catastrophic loss of biological diversity persists. If we are to be successful in saving even a handful of critically endangered species, it is clear that they will need to be intensively managed using a variety of in situ and ex situ approaches. The highest profile ex situ conservation strategy is captive breeding. Although its relative role in an overall conservation management plan varies, captive breeding may present the only viable option for propagating the future of a species once rendered extinct in the wild. The study of Iyengar et al. in this issue of Molecular Ecology on one such species, the scimitar-horned oryx (Oryx dammah), represents an important contribution to ex situ conservation, demonstrating how critical insights into demographic history and population genetic structure obtained using molecular approaches may significantly contribute to captive breeding and reintroduction strategies.     

天鹅洲迁地保护江豚群体的遗传评估与发展预测

文章以2008年春季遭受严重雪灾的天鹅洲白鱀豚国家级自然保护区迁地保护江豚群体为研究对象,利用物种特异性微卫星遗传标记对该群体的遗传多样性进行了评估,并通过软件对其发展趋势进行了模拟和预测。研究结果表明,虽然2008年春季雪灾并未导致该群体遗传多样性的严重损失,灾后群体依然表现出中等水平的微卫星遗传多样性(18个座位的平均等位基因数为4.780,平均观察杂合度和期望杂合度分别为0.748和0.674);但模拟结果显示,该迁地保护江豚群体的遗传多样性将快速下降,100年后仅能保留约79%的等位基因和约84%的遗传杂合度。此外,模拟结果表明,通过增加群体数量和调整群体性比可有效减缓该群体遗传多样性的下降速度。根据研究结果,并结合长江江豚自然种群快速下降的现状,作者提出天鹅洲迁地保护江豚群体当前最重要的保护策略应该是尽早补充一定数量的、合适的野生个体,在加强遗传多样性保护的同时使其群体数量快速增长并形成一个更大规模的有效繁殖群体。     

湖北河岸带植物中华蚊母树遗传多样性的SRAP分析

利用SRAP分子标记技术,对湖北省河岸带植物中华蚊母树的4个自然居群和1个迁地居群的遗传多样性和遗传结构进行了分析。结果表明,中华蚊母树物种具有较高水平的遗传多样性,7对SRAP引物进行PCR扩增的多态性位点百分率(PPF)为80.43%,每个位点的等位基因数(A)为2,有效等位基因数(Ae)为1.34,总遗传多样性Nei’s基因多样性指数(Hp)为0.215 9,Shannon信息多样性指数(I)为0.350 9。在居群水平上,5个居群总的遗传变异Ht为0.218 8,居群内的遗传变异Hs为0.193 4,居群间的遗传分化系数Gst为0.116 1,表明在总的遗传变异中有88.39%变异存在于居群内,仅11.61%存在于居群间,居群间的基因流Nm为3.807 2,表明居群间有较大程度的基因交流。UPGMA聚类分析和主成分分析显示中华蚊母树主要分为两个居群组,在长江三峡沿岸香溪和乐天溪由于遗传距离比较近聚为一小类再与高家堰聚为一大类,而沿渡河和三峡植物园居群聚为另一大类,表明迁地居群三峡植物园的中华蚊母树与来自巴东沿渡河居群的样本亲缘关系最近,且三峡植物园迁地保护居群基本保育了其遗传多样性总水平。同时在分析讨论了中华蚊母树遗传多样性与其繁育系统、生境及其起源进化的关系的基础上,评价了中华蚊母树的保护策略,并在评价保护成果的基础上,提出了今后进一步保育的策略。结果还表明SRAP标记是分析中华蚊母树遗传多样性和遗传结构非常可靠的一种标记,而且这是使用SRAP标记研究中华蚊母树的首次报道。