Serotypes and Immobilization Antigens in Paramecium caudatum*

SYNOPSIS. Some of the serotypes in Paramecium caudatum are described in this paper. Immobilization antigens of P. caudatum have been obtained by extracting paramecia in a dilute salt solution containing 15% alcohol. Immobilization antigen F from stock 162 has been isolated and has a sedimentation coefficient of 9.3 Svedbergs, diffusion coefficient of 2.3 × 10^-7 cm/sec, and molecular weight of approximately 340,000.     

Survival of ciliate protozoa under starvation conditions and at low bacterial levels

Under starvation conditions, 50% survivorship times displayed no significant relationship with cell size in 2 ciliate species in this study and 5 protozoan species from the literature. Differences in survival ability were attributed to differences in weight-specific respiratory rate and relative motility among these 7 species. At low bacterial levels, 4 ciliate species in this study displayed significant differences in survivorship. High survivorship ofEuplotes patella relative to that ofParamecium caudatum andParaurostyla sp. at low ciliate densities was attributed to the lower individual energy requirements of this smaller species. High survivorship ofStentor coeruleus was interpreted as an effect of its large quantity of reserves and low respiratory rate. The survivorship ofE. patella was reduced at a higher population density. Four ciliate species survived longer at 15C than at 22C. Q₁₀ values based on 50% survivorship times at these 2 temperatures were much lower than Q₁₀ values based on respiratory rates and growth rates of well-fed ciliates over a similar temperature range.     

Food-web models that generate constant predator-prey ratios

Summary An approximately constant ratio of number of predator species/number of prey species is observed in several natural communities, although the exact value of the ratio may vary with habitat and the types of organisms in the food web. We test the hypothesis that a constant predator/prey ratio can be generated by what Holt (1977) terms apparent competition and what Jeffries and Lawton (1984) call competition for enemy-free space. We create simple, two trophic-level communities by drawing species of predators and prey at random from a species pool, simulating their interactions using Lotka-Volterra models. The simulated food webs converge over successive periods of invasion and extinction to locally stable systems with approximately constant ratios of number of predator species/number of prey species, despite varying initial conditions. As expected, predator/prey ratios take different values depending upon the biology of the simulated species. We conclude that apparent competition between prey species via shared enemies may be one mechanism whereby approximately constant predator/prey ratios are generated in natural communities.     

Emergent multiple predator effects in an experimental microbial community

Studies on multiple predator effects have typically focused on metazoans. Here we examined the effects of multiple consumers on bacteria. Specifically, we investigated the separate and combined effects of two common bacterivorous ciliates, Colpidium striatum and Paramecium caudatum, on a simple bacterial assemblage. Non-additive multiple predator effects emerged for all bacterial species significantly affected by grazing, where bacterial responses in the two-consumer treatment cannot be predicted by summing the separate effects of the two consumers. Some species showed risk reduction (observed responses less than expected), whereas others showed risk enhancement (observed responses larger than expected). We attributed risk alteration to the interference between the two consumers. Contradictory to theoretical predictions, total bacterial abundance in the two-consumer treatment did not differ from single-consumer treatments and consumer-free controls, due largely to risk reduction and compensatory responses within the bacterial assemblage. Decomposition of particulate organic matter was greater in the two-consumer treatment than the Paramecium single-consumer treatment, but did not differ among other treatments. These results suggest that the presence of multiple consumers may have unexpected impacts on the structure and functioning of bacterial communities.     

Effects of N-Acetylcysteine in Ozone-Induced Chronic Obstructive Pulmonary Disease Model

Introduction

Chronic exposure to high levels of ozone induces emphysema and chronic inflammation in mice. We determined the recovery from ozone-induced injury and whether an antioxidant, N-acetylcysteine (NAC), could prevent or reverse the lung damage.

Methods

Mice were exposed to ozone (2.5 ppm, 3 hours/12 exposures, over 6 weeks) and studied 24 hours (24h) or 6 weeks (6W) later. Nac (100 mg/kg, intraperitoneally) was administered either before each exposure (preventive) or after completion of exposure (therapeutic) for 6 weeks.

Results

After ozone exposure, there was an increase in functional residual capacity, total lung volume, and lung compliance, and a reduction in the ratio of forced expiratory volume at 25 and 50 milliseconds to forced vital capacity (FEV₂₅/FVC, FEV₅₀/FVC). Mean linear intercept (L_m) and airway hyperresponsiveness (AHR) to acetylcholine increased, and remained unchanged at 6W after cessation of exposure. Preventive NAC reduced the number of BAL macrophages and airway smooth muscle (ASM) mass. Therapeutic NAC reversed AHR, and reduced ASM mass and apoptotic cells.

Conclusion

Emphysema and lung function changes were irreversible up to 6W after cessation of ozone exposure, and were not reversed by NAC. The beneficial effects of therapeutic NAC may be restricted to the ASM.     

A graph-theoretic method for the basic reproduction number in continuous time epidemiological models

In epidemiological models of infectious diseases the basic reproduction number is used as a threshold parameter to determine the threshold between disease extinction and outbreak. A graph-theoretic form of Gaussian elimination using digraph reduction is derived and an algorithm given for calculating the basic reproduction number in continuous time epidemiological models. Examples illustrate how this method can be applied to compartmental models of infectious diseases modelled by a system of ordinary differential equations. We also show with these examples how lower bounds for can be obtained from the digraphs in the reduction process.     

The distribution of fresh-water protozoa on a relatively homogeneous substrate

Summary The distribution of fresh-water protozoan species on an artificial uniform substrate was studied in plastic troughs with continuous flow of unfiltered lake water. Ten areas were sampled at the same time in each trough and the diversity of species per area determined. Estimates were made of the density as well, but since some species were too delicate to preserve without destroying certain taxonomic characters the primary emphasis was placed on the diversity of species. No patterns were evident which suggested anything other than a random distribution of both species and individuals within each system. The situation appears conceptually similar to that originally pointed out by G. Evelyn Hutchinson in The Paradox of the Plankton in which he notes the difficulty of applying the niche concept to the multi-specific association of autotrophic phytoplankton in the freely circulating upper waters of lakes and oceans.This work was carried out while the authors were respectively Visiting Lecturer and Teaching Assistant at the University of Michigan Biological Station, Pellston, Michigan.Department of Zoology University of Kansas     

Massive colonization of protein-coding exons by selfish genetic elements in Paramecium germline genomes

Ciliates are unicellular eukaryotes with both a germline genome and a somatic genome in the same cytoplasm. The somatic macronucleus (MAC), responsible for gene expression, is not sexually transmitted but develops from a copy of the germline micronucleus (MIC) at each sexual generation. In the MIC genome of Paramecium tetraurelia, genes are interrupted by tens of thousands of unique intervening sequences called internal eliminated sequences (IESs), which have to be precisely excised during the development of the new MAC to restore functional genes. To understand the evolutionary origin of this peculiar genomic architecture, we sequenced the MIC genomes of 9 Paramecium species (from approximately 100 Mb in Paramecium aurelia species to >1.5 Gb in Paramecium caudatum). We detected several waves of IES gains, both in ancestral and in more recent lineages. While the vast majority of IESs are single copy in present-day genomes, we identified several families of mobile IESs, including nonautonomous elements acquired via horizontal transfer, which generated tens to thousands of new copies. These observations provide the first direct evidence that transposable elements can account for the massive proliferation of IESs in Paramecium. The comparison of IESs of different evolutionary ages indicates that, over time, IESs shorten and diverge rapidly in sequence while they acquire features that allow them to be more efficiently excised. We nevertheless identified rare cases of IESs that are under strong purifying selection across the aurelia clade. The cases examined contain or overlap cellular genes that are inactivated by excision during development, suggesting conserved regulatory mechanisms. Similar to the evolution of introns in eukaryotes, the evolution of Paramecium IESs highlights the major role played by selfish genetic elements in shaping the complexity of genome architecture and gene expression.

A comparative genomics study of nine Paramecium species reveals successful invasion of genes by transposable elements in their germline genomes, showing that the internal eliminated sequences (IESs) followed an evolutionary trajectory remarkably similar to that of spliceosomal introns.     

Isolation and characterization of a <Emphasis Type="Italic">Paramecium</Emphasis> cDNA clone encoding a putative serine/threonine protein kinase

Mitogen-activated protein (MAP) kinases, a closely related family of protein kinases, are involved in cell cycle regulation and differentiation in yeast and human cells. They have not been documented in ciliates. We used PCR to amplify DNA sequences of a ciliated protozoan—Paramecium caudatum—using primers corresponding to amino acid sequences that are common to MAP kinases. We isolated and sequenced one putative MAP kinase-like serine/threonine kinase cDNA from P. caudatum. This cDNA, called pcstk1 (Paramecium caudatum Serine/Threonine Kinase 1) shared approximately 35% amino acid identity with MAP kinases from yeast. MAP kinases are activated by phosphorylation of specific threonine and tyrosine residues. These two amino acid residues are conserved in the PCSTK1 sequence at positions Thr 159 and Tyr 161. The PSTAIRE motif, which is characteristic of the CDK2 gene family, cannot be found in ORF of PCSTK1. The highest homology score was to human STK9, which contains MAP type kinase domains. Comparisons of expression level have shown that pcstk1 is expressed equally in cells at different stages (sexual and asexual). We discussed the possibility, as in other organisms, that a family of MAP kinase genes exists in P. caudatum.     

Enzyme Variation in Paramecium caudatum

Stocks of four “syngens” (syngens 1, 3, 12, 13) of Paramecium caudatum could not be distinguished on the basis of isozymic variations of six enzymes. Using the most common enzyme form as the standard for the syngen, we found a higher coefficient of identity between syngens (>90%) than within syngens (73%). These observations, combined with evidence for fertile matings among the groups, suggest that the groups do not warrant the status of syngens. True syngenic variation in P. caudatum is, however, clearly established on the basis of isozymic and breeding studies of wild stocks collected from various places. Some stocks from England have a close affinity with those from Japan, but stocks from Scotland and California must be placed in separate syngenic sets. Thus, P. caudatum is indeed a species complex, within which evolutionarily distinct groups (species = syngens) are identifiable. The definition of syngens on the basis of initial agglutination response is, however, unjustified.     

A mathematical model of the interactions in the mixed culture of invertebrates and algae in the “producer–consumer” aquatic biotic cycle

This paper presents a mathematical model of interactions between two herbivorous invertebrates (ciliate Paramecium caudatum and rotifer Brachionus plicatilis) and two planktonic algae (Chlorella vulgaris and Scenedesmus quadricauda) spatially segregated in two compartments of a chemostat–type experimental microcosm system. The model mimics a producer–consumer aquatic biotic cycle, describing the dynamics of the mixed culture of ciliates and rotifers, as consumer compartment, feeding on the mixed algal culture, as producer compartment, under N-limiting conditions. We experimentally found that metabolites of the alga Scenedesmus produce an adverse effect on the reproduction of ciliate Paramecium. Taking this effect into account improved the behavior of the model, the results of which came into qualitative agreement with the experimental results. Both our experimental and modeling approaches demonstrated that, even in conditions of a spatially–segregated producer-consumer biotic cycle, species coexistence is impossible either in the mixed algal culture or in the mixed invertebrate culture. Scenedesmus excluded Chlorella, whereas Brachionus excluded Paramecium.     

Identification of a specific protein in the mitochondrial fraction of the rat heart whose phosphorylation is inhibited by taurine

Summary It was previously reported that the mitochondrial fraction of the rat heart contained a specific protein with a molecular weight of approximately 44kDa whose phosphorylation was inhibited by taurine (Lombardini,1994a). Isolation of the 44kDa phosphoprotein on a 1-dimensional polyacrylamide gel using traditional glycine buffers followed by re-electrophoresing the cut out proportion of the gel which corresponds to the 44kDa protein on a tricine-buffered gel resulted in sufficient pure protein for sequence analysis. The results indicate that the 44kDa phosphoprotein is pyruvate dehydrogenase.     

Field and laboratory tests of new insecticides against the apple maggot, Rhagoletis pomonella (Walsh) (Diptera: Tephritidae)

Laboratory bioassays and field tests were conducted to compare the effectiveness of the new insecticides, imidacloprid, indoxacarb, pyriproxyfen, spinosad, thiacloprid, and thiamethoxam, against apple maggot. The activity ranking of the compounds in reducing oviposition in laboratory bioassays was: imidacloprid, 95% reduction at 11 ppm > thiamethoxam, 91% and thiacloprid, 89% reduction at 100 ppm > spinosad, 98% reduction at 316 ppm > indoxacarb, 80% reduction at 1000 ppm > pyriproxyfen, 0% reduction at 38 ppm. In laboratory bioassays, the only insecticides that were toxic to flies at concentrations equal to or below the recommended field rates were imidacloprid, (50% of flies at 11 ppm), spinosad (90% of flies at rates > 10 ppm), and thiamethoxam (approximately 50% of flies at 32 ppm). In field trials, thiacloprid was the only material that consistently controlled apple maggot fruit infestation that was comparable to standard treatments of organophosphate insecticides. Spinosad applied at weekly intervals, and indoxacarb applied as biweekly sprays provided adequate control of apple maggot damage when infestation levels in the field were low, but were not effective in preventing damage in small plots when apple maggot pressure was high.     

Molecular marker analysis of genes controlling morphological variation in Brassica rapa (syn. campestris)

Construction of a detailed RFLP linkage map of B. rapa (syn. campestris) made it possible, for the first time, to study individual genes controlling quantitative traits in this species. Ninety-five F₂ individuals from a cross of Chinese cabbage cv Michihili by Spring broccoli were analyzed for segregation at 220 RFLP loci and for variation in leaf, stem, and flowering characteristics. The number, location, and magnitude of genes underlying 28 traits were determined by using an interval mapping method. Zero to five putative quantitative trait loci (QTL) were detected for each of the traits examined. There were unequal gene effects on the expression of many traits, and the inheritance patterns of traits ranged from those controlled by a single major gene plus minor genes to those controlled by polygenes with small and similar effects. The effect of marker locus density on detection of QTL was analyzed, and the results showed that the number of QTL detected did not change when the number of marker loci used for QTL mapping was decreased from 220 to 126; however, a further reduction from 126 to 56 caused more than 15% loss of the total QTL detected. The detection of putative minor QTL by removing the masking effects of major QTL was explored.     

The Toxic Symbiont Caedibacter caryophila in the Cytoplasm of Paramecium novaurelia

Endosymbiotic bacteria were observed to inhabit the cytoplasm of the freshwater ciliateParamecium novaurelia. Transmission electron microscopy and toxicity tests with sensitive paramecia showed that the endosymbionts belong to the genusCaedibacter. The bacteria conferred a killer trait to their host paramecia. The production of a proteinaceous inclusion body (“R-body”) in the bacterial cell makes them toxic to other paramecia after they become enclosed in food vacuoles. R-bodies ofCaedibacter sp were associated with phages, which are known in most otherCaedibacter species to code for the R-body proteins. The killer-effect ofP. novaurelia on sensitiveP. caudatum strains was of the “paralysis” type, which is a characteristic of the symbiont speciesCaedibacter caryophila. Until nowC. caryophila was known to inhabit the macronucleus ofParamecium caudatum only. Sequencing of the 16S rRNA-gene proved thatCaedibacter sp from the cytoplasm ofP. novaurelia belongs to the speciesC. caryophila as well. The rDNA-sequence of 1695 bp length differed in a total of only 1 bp from the corresponding gene inC. caryophila from the macronucleus ofP. caudatum. The results indicate that the infection of specific host cell compartments may depend on host genes, but not on different traits of the infecting symbiont species. The occurrence of killer and sensitive paramecia strains together in one pond is discussed with respect to the competitive advantage of the killer trait.     

Migration of N-Alkanes from Diesel Oil along the Bacteria-Ciliates Trophic Chain

The data on the dynamics of the content and qualitative composition of intracellular alkanes in Paramecium caudatum Ehrenberg, 1838 cells feeding on bacteria with different levels of exposure to diesel oil are presented. The possibility of migration of alkanes from diesel oil along the trophic chain from bacteria to ciliates was demonstrated.__________Translated from Izvestiya Akademii Nauk, Seriya Biologicheskaya, No. 3, 2005, pp. 375–379.Original Russian Text Copyright © 2005 by Karetnikova, Zhirkova.     

Thermocyclops ouadanei n. sp. (crustacea: copepoda) from Mauretania (North-West Africa)

Thermocyclops ouadanei n. sp. from Mauretania is described and figured. This new species is characterized by the structure of the receptaculum seminis, the uniting lamella of the P₄ which bears no marginal denticles on the rounded prominences, the length of the apical spines on the endopodite 3 of the P₄ and by the length of the furcal setae. Its relationship with other Thermocyclops species is discussed.Contribution no 16 from project Limnology of the Sahara under contract n° 2.0009.75 with the Fonds voor Kollektief Fundamenteel Onderzoek, Belgium     

Holospora elegans-Infected Micronuclei of Paramecium caudatum Still Serve a Function During Vegetative Life1

The fission rate of Paramecium caudatum cells infected with the micronucleus-specific bacterium Holospora elegans was examined before and after elimination of the micronucleus. Uninfected cells, micronucleate and amicronucleate, were used as controls. Emicronucleation of Holospora elegans-infected cells causes a decrease of fission rates, as is observed after emicronucleation of uninfected cells. This is taken as an argument that infected micronuclei still serve a function for the vegetative life of P. caudatum.     

Comparative spatial distribution, size, biomass and growth rate of two varieties of bracken fern (Pteridium aquilinum L. Kuhn) in a neotropical montane habitat

A comparative field study of caudatum and arachnoideum, the two Pteridium aquilinum varieties of the caudatum subspecies known to grow in the neotropics, was performed in a montane savanna habitat of the Venezuelan Andes that was affected by wildfire. Frond size, ramet density and spatial distribution, blade and rhizome biomass, and frond elongation and expansion rates were measured in separate, isolated stands each containing only one bracken variety and covering approximately the same area (540 m²). In addition to clearly discernible morphological differences, caudatum and arachnoideum were found to possess distinct features: caudatum tends to develop open stands of relatively shorter blades of 76.6±0.89 cm (±SE) of rachis length and lower ramet density (1.6 fronds m^-2, max.=7 fronds m^-2) whereas arachnoideum grows into longer, more expanded fronds 124±1.6 cm tall and significantly higher ramet density (5.1 fronds/m², max.=14.6 fronds m^-2). The sum of aerial and underground biomass was found to be notably larger for arachnoideum (8522±614 Kg/ha) than for caudatum (1929±131 Kg ha^-1) in stands growing under the same habitat conditions. Therefore the spatial distribution of arachnoideum appeared considerably more compact than that of caudatum. Blade growth rates and development time were also very different. Newly emerged caudatum croziers developed into mature blades within 42 to 48 days following an inverse exponential curve whereas arachnoideum blades required 70 to 75 days to reach maturity following a linear development. All the above dissimilarities are interpreted as the hitherto unreported indication of diverging growth strategies of two cohabitant bracken varieties following fire.     

Protozoan Predation of Escherichia coli O157:H7 Is Unaffected by the Carriage of Shiga Toxin-Encoding Bacteriophages

Escherichia coli O157:H7 is a food-borne bacterium that causes hemorrhagic diarrhea and hemolytic uremic syndrome in humans. While cattle are a known source of E. coli O157:H7 exposure resulting in human infection, environmental reservoirs may also be important sources of infection for both cattle and humans. Bacteriophage-encoded Shiga toxins (Stx) carried by E. coli O157:H7 may provide a selective advantage for survival of these bacteria in the environment, possibly through their toxic effects on grazing protozoa. To determine Stx effects on protozoan grazing, we co-cultured Paramecium caudatum, a common ciliate protozoon in cattle water sources, with multiple strains of Shiga-toxigenic E. coli O157:H7 and non-Shiga toxigenic cattle commensal E. coli. Over three days at ambient laboratory temperature, P. caudatum consistently reduced both E. coli O157:H7 and non-Shiga toxigenic E. coli populations by 1–3 log cfu. Furthermore, a wild-type strain of Shiga-toxigenic E. coli O157:H7 (EDL933) and isogenic mutants lacking the A subunit of Stx 2a, the entire Stx 2a-encoding bacteriophage, and/or the entire Stx 1-encoding bacteriophage were grazed with similar efficacy by both P. caudatum and Tetrahymena pyriformis (another ciliate protozoon). Therefore, our data provided no evidence of a protective effect of either Stx or the products of other bacteriophage genes on protozoan predation of E. coli. Further research is necessary to determine if the grazing activity of naturally-occurring protozoa in cattle water troughs can serve to decrease cattle exposure to E. coli O157:H7 and other Shiga-toxigenic E. coli.