Application of ribulose-1,5-bisphosphate carboxylase/oxygenase genes as molecular markers for assessment of the diversity of autotrophic microbial communities inhabiting the upper sediment horizons of the saline and soda lakes of the Kulunda Steppe

The genes encoding the key metabolic reactions are often used as functional markers for phylogenetic analysis and microbial ecology studies. The composition and structure of the genes encoding ribulose-1,5-bisphosphate carboxylase (RuBisCO) of various photoautotrophic bacteria, representatives of the order Chromatiales, including collection strains and the strains isolated from saline and soda lakes, were studied in detail. The green-like form I RuBisCO was detected in the majority of the studied strains. In some strains, the genes encoding both form I and form II RuBisCO were present, which has not been previously known for the representatives of this group of bacteria. Moreover, RuBisCO genes were used as functional markers to investigate the autotrophic microbial community inhabiting the upper horizons of bottom sediments of two saline soda lakes and two hypersaline neutral lakes of the Kulunda Steppe. In general, the diversity of autotrophic bacteria in the studied sediment horizons was low. In soda lakes, haloalkaliphilic cyanobacteria and sulfuroxidizing bacteria (SOB) of the genus Halorhodospira were predominant. In saline lakes, halophilic chemoautotrophic SOB Halothiobacillus and Thioalkalivibrio were found, as well as photoautotrophic bacteria of the genus Ectothiorhodosinus and cyanobacteria. Many phylotypes remained unidentified, which indicates the presence of groups of microorganisms with an unknown type of metabolism.     

The role of environmental parameters in the structure of phytoplankton assemblages and cyanobacteria toxins in two hypereutrophic lakes

We evaluated the variability of cyanotoxins, water chemistry, and cyanobacteria communities in two hypereutrophic drowned river mouth lakes (Spring Lake and Mona Lake; summer 2006) in west Michigan, USA. Even with considerable geographical and watershed similarity, local variations in nutrient concentrations and environmental factors were found to influence the differences observed in cyanobacteria assemblages and cyanotoxins levels between the two lakes. Limnothrix sp. dominated the phytoplankton community in Spring Lake (82% of biovolume) and was negatively correlated with total phosphorus (TP) concentrations. Although Spring Lake was treated with alum during the previous year, Limnothrix sp. was able to bloom in the lower P environment. In contrast, the N₂-fixing cyanobacterium, Anabaena flos-aquae, dominated the phytoplankton in Mona Lake (64% of biovolume). N₂-fixing cyanobacteria dominance in Mona Lake was correlated with higher TP lower dissolved nitrogen levels. Cylindrospermopsis raciborskii was found in both systems; however, the toxin-producing polyketide synthetase gene was not present in either population. The higher TP in Mona Lake appeared to account for the 3-fold increase in cyanobacteria biovolume. Restoration plans for both lakes should include assessments of internal loading and continued phytoplankton monitoring to track the temporal distribution of cyanobacteria species and cyanotoxin concentrations.     

Molecular identification and evolution of the cyclic peptide hepatotoxins, microcystin and nodularin, synthetase genes in three orders of cyanobacteria

The cyanobacterial hepatotoxins, microcystin and nodularin, are produced by a wide range of cyanobacteria. Microcystin production has been reported in the four cyanobacterial orders: Oscillatoriales, Chroococcales, Stigonematales, and Nostocales. The production of nodularin is a distinct characteristic of the Nostocales genus Nodularia. A single rapid method is needed to reliably detect cyanobacteria that are potentially capable of producing these hepatotoxins. To this end, a PCR was designed to detect all potential microcystin and nodularin-producing cyanobacteria from laboratory cultures as well as in harmful algal blooms. The aminotransferase (AMT) domain, which is located on the modules mcyE and ndaF of the microcystin and nodularin synthetase enzyme complexes, respectively, was chosen as the target sequence because of its essential function in the synthesis of all microcystins as well as nodularins. Using the described PCR, it was possible to amplify a 472 bp PCR product from the AMT domains of all tested hepatotoxic species and bloom samples. Sequence data provided further insight into the evolution of the microcystin and nodularin synthetases through bioinformatic analyses of the AMT in microcystin and nodularin synthetases, with congruence between the evolution of 16S rRNA and the AMT domain.     

Nutrient ratios and phytoplankton community structure in the large, shallow, eutrophic, subtropical Lakes Okeechobee (Florida, USA) and Taihu (China)

Analysis of ten- and four-year datasets for the large, shallow, subtropical, and eutrophic Lakes Okeechobee (USA) and Taihu (China), respectively, suggest that resource-ratio explanations for cyanobacteria dominance may not apply to these two lakes. Datasets were examined to identify relationships between nutrient ratios [total nitrogen (TN):total phosphorus (TP) and ammonium (NH₄ ⁺):oxidized N (NO _x )] and phytoplankton community structure (as proportions of cyanobacteria and diatoms to total phytoplankton biomass). Datasets were pooled by sampling month, averaged lake-wide, and analyzed with linear regression. In Okeechobee, the cyanobacteria proportion increased and the diatom proportion decreased with increasing TN:TP. In Taihu, cyanobacteria decreased with increasing TN:TP, but the opposite trend observed for diatoms was marginally significant. Okeechobee cyanobacteria increased and diatoms decreased with increasing NH₄ ⁺:NO _x , but no significant relationships between phytoplankton and NH₄ ⁺:NO _x were observed in Taihu. Both lakes had significant relationships between phytoplankton community structure and total nutrients, but these relationships were the opposite of those expected. Relationships between phytoplankton community structure and water quality parameters from the previous month resulted in improved relationships, suggesting a predictive capability. Statistical analysis of the entire datasets (not pooled) supported these and additional relationships with other parameters, including temperature and water clarity.     

Planktonic communities of melt ponds on the McMurdo Ice Shelf,Antarctica

The planktonic community of 20 melt ponds on the McMurdo Ice Shelf was investigated to determine taxa abundance and diversity and the controlling environmental variables. Grazing rates were measured using fluorescent beads to examine trophic interactions between ciliates, bacteria and phytoplankton. The melt ponds contained a surprisingly varied planktonic community with relatively high abundance compared with Antarctic continental lakes. There was a clear distinction between small, productive ponds dominated by bactivorous small ciliates, hymenostomes and heterotrophic cryptophytes and the larger, less productive ponds where these taxa were less abundant. The benthic mats of cyanobacteria and diatoms were potentially a source of food for some ciliate species but the majority were bacterivores. The lack of large herbivorous ciliates, the heterotrophic capabilities of cryptophytes and the broad ecological tolerances contributed to a planktonic community dominated by cryptophytes.     

Increased risk of cyanobacterial blooms in northern high‐latitude lakes through climate warming and phosphorus enrichment

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Comparative analysis of rotifer community structure in five subtropical shallow lakes in East China: role of physical and chemical conditions

Worldwide, there have been few comparative studies on rotifer communities in subtropical lakes. We studied changes in rotifer community structure over 1 year and its relationship to several physicochemical variables in five subtropical shallow lakes in East China, covering a nutrient gradient from mesotrophy to moderate eutrophy. In these lakes, the genera Brachionus, Lecane, and Trichocerca dominated the rotifer species composition, and Polyarthra dolichoptera, Keratella cochlearis, Filinia longiseta, T. pusilla, and Anuraeopsis fissa were the dominant species. With increased nutrient loading, total rotifer abundance and species dominance increased, indicating that rotifer abundance might be a more sensitive indicator of trophic state than species composition. Comparative analyses of the six rotifer community indices calculated in this study and redundancy analysis (RDA) revealed that the two slightly eutrophic lakes and the other two moderately eutrophic lakes exhibited a high degree similarity in community structure. This suggests that the trophic state of a lake determines the rotifer community structure. In contrast, in the two moderately eutrophic lakes, the mass ratios of TN:TP and the contents of TP suggested N-limitation and cyanobacteria dominance in phytoplankton communities might be possible. In these lakes TN played a more important role in shaping the rotifer community according to stepwise multiple regression and RDA. RDA analysis also suggested that rotifer species distribution was strongly associated with trophic state and water temperature, with water temperature being the most important factor in determining seasonality.     

The recovery of a very shallow eutrophic lake, 20 years after the control of effluent derived phosphorus

1. Monitoring at fortnightly to monthly intervals of a very shallow, lowland lake over 24 years has enabled the time course of recovery from nutrient enrichment to be investigated after high external P loading of the lake (>10 g P m^?2 year^?1) was reduced between 1977 and 1980. 2. The lake showed a relatively rapid response during the spring and early summer, with a reduction in phytoplankton biomass occurring after 5 years when soluble reactive phosphorus concentration was <10 μg L^?1. 3. However, during the later summer the response was delayed for 15 years because of sustained remobilisation of phosphorus from the sediment. The greater water clarity in spring and a gradual shift from planktonic to benthic algal growth may be related to the reduction in internal loading after 15 years. 4. Changes in the phytoplankton community composition were also observed. Centric diatoms became less dominant in the spring, and the summer cyanobacteria populations originally dominated by non‐heterocystous species (Limnothrix/Planktothrix spp.) almost disappeared. Heterocystous species (Anabaena spp. and Aphanizomenon flos‐aquae) were slower to decline, but after 20 years the phytoplankton community was no longer dominated by cyanobacteria. 5. There were no substantial changes in food web structure following re‐oligotrophication. Total zooplankton biomass decreased but body size of Daphnia hyalina, the largest zooplankton species in the lake, remained unchanged, suggesting that the fish population remained dominated by planktivorous species. 6. Macrophyte growth was still largely absent after 20 years, although during the spring water clarity may have become sufficient for macrophytes to re‐establish.     

Mass developments of the cyanobacteria Anabaenopsis and Cyanospira (Nostocales) in the soda lakes of Kenya: ecological and systematic implications

The food web of the saline–alkaline lakes of East Africa is characterised by a unique interaction between the Lesser Flamingos as consumer birds and the cyanobacterium Arthrospira fusiformis as the primary producer. However, this interaction is disturbed frequently by alterations of the phytoplankton community. During the period 2001–2012, species of the cyanobacteria Anabaenopsis and Cyanospira were observed in four soda lakes of the African Rift Valley and compared to the entire phytoplankton biomass and composition. Their morphology was highly variable. Each species preferred a distinct range of salinity: C. capsulata 30–40 ppt, C. rippkae 25–35 ppt, A. arnoldii and A. abijatae 10–30 ppt, and A. elenkinii 0–15 ppt. Occasional dominance of Anabaenopsis and Cyanospira in the lakes investigated shows that members of these genera are serious competitors of A. fusiformis, the main food for Lesser Flamingos. Furthermore, mass developments of C. capsulata adversely affected food uptake by the flamingos at Lake Bogoria because they formed mucilaginous colonies that clogged the food filter system. From field samples of the three lakes, uncultured Anabaenopsis and Cyanospira spp. clones were obtained and subjected to phylogenetic analyses. The 16S rRNA gene sequencing data put into doubt the differentiation of Anabaenopsis and Cyanospira into separate genera as recently suggested.     

Hydrology and Diatom Phytoplankton of High Arctic Lakes and Ponds on Store Koldewey,Northeast Greenland

We document hydrological and phytoplankton characteristics of nine lakes and two ponds on Store Koldewey, a culturally undisturbed island off Northeast Greenland. The limnological survey included the recording of temperature, conductivity, oxygen concentration and saturation, pH, ionic composition, transparency, and the diatom phytoplankton community. In summer 2003, the lakes were cold, monomictic, thermally unstratified, alkaline and likely oligotrophic water bodies. Diatom phytoplankton was present in six lakes and consisted of four dominant species (Aulacoseira tethera, Cyclotella pseudostelligera, C. rossii, and Fragilaria tenera). The concentration of planktonic diatoms varied distinctly between the lakes. (© 2005 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

Abundance and distribution of picoplankton in tropical, oligotrophic Lake Kivu, eastern Africa

1. We used flow cytometry to characterize freshwater photosynthetic picoplankton (PPP) and heterotrophic bacteria (HB) in Lake Kivu, one of the East‐African great lakes. Throughout three cruises run in different seasons, covering the four major basins, phycoerythrin‐rich cells dominated the PPP. Heterotrophic bacteria and PPP cell numbers were always high and spatial variations were modest. This represents an important difference from temperate and high latitude lakes that show high fluctuations in cell abundance over an annual cycle. 2. Three populations of picocyanobacteria were identified: one corresponded to single‐cells (identified as Synechococcus by epifluorescence microscopy, molecular methods and pigment content), and the two other that most probably correspond to two and four celled colonies of the same taxon. The proportion of these two subpopulations was greater under stratified conditions, with stronger nutrient limitation. 3. High PPP concentrations (c. 10⁵ cell mL^?1) relative to HB (c. 10⁶ cell mL^?1) were always found. Lake Kivu supports relatively less bacteria than phytoplankton biomass than temperate systems, probably as a consequence of factors such as temperature, oligotrophy, nutrient limitation and trophic structure. 4. A review of PPP concentration across aquatic systems suggests that the abundance of Synechococcus‐like cyanobacteria in large, oligotrophic, tropical lakes is very high. 5. Photosynthetic picoplankton cell abundances in the oligotrophic tropical lakes Kivu and Tanganyika are comparable to those of eutrophic temperate lakes. This apparently contradicts the view that PPP abundance increases with increasing eutrophy. More data on PPP in tropical lakes are needed to explore further this particular pattern.     

Microzooplankton feeding behaviour: grazing on the microbial and the classical food web of African soda lakes

We investigated the feeding behaviour of the dominant microzooplankton of saline lakes in the East African Rift Valley. A set of grazing experiments revealed high ingestion rates of the two euryhaline rotifers Brachionus dimidiatus and Brachionus plicatilis and of the large-sized omnivorous ciliates Frontonia sp. and Condylostoma magnum reflecting the unique nature of tropical saline systems. The size spectrum of ingested particles was broad and even included filamentous cyanobacteria such as the commonly dominating Arthrospira fusiformis. Feeding selectivity on cyanobacteria, however, was rather low showing higher values for cryptomonads and small ciliates. Bacterial biomass was favoured by the presence of grazers, as small bacterivorous predators were reduced at an average of 13.9%, showing the cascading effect of large zooplankton on the food web structure. Overall, based on this first-time study of the microzooplankton feeding behaviour in East African soda lakes, a strong structuring effect of rotifers and large ciliates on microbial plankton communities is assumed, especially in times of high consumer biomass.     

浅水湖泊浮水植物芡实收割对浮游植物群落的影响

浅水湖泊生态系统正遭受广泛而强烈的人为干扰,但是对收割水生植物干扰的研究甚少。于2019年8月对芡实过度生长的陈瑶湖进行通道式分区收割工程,分析了收割芡实（Euryale ferox）前后不同处理组浮游植物群落的变化。研究期间共鉴定出浮游植物6门47属72种,其中收割前63种,收割后71种。收割后浮游植物的细胞密度和生物量均高于收割前,分别增加了39.78%和5.09%。收割芡实导致陈瑶湖浮游植物群落为由蓝藻-绿藻-硅藻-隐藻群落转变为蓝藻-绿藻-硅藻群落。其中蓝藻细胞密度和生物量显著高于收割前（P<0.05）,归因于有害蓝藻（铜绿微囊藻Microcystis aeruginosa、水华束丝藻Aphanizomenon flos-aquae、小颤藻Oscillatoria tenuis、卷曲鱼腥藻Dolicospermum circinale、小席藻Phormidium tenu）的增加。收割还导致了硅藻群落由附生型向浮游型硅藻的转变,表现为尖针杆藻（Ulnaria acus）减少,而颗粒直链藻极狭变种（Aulacoseira granulata var.angustissima）、梅尼小环藻（Cyclotella meneghiniana）增加。在芡实收割过程中,未收割组和河道的浮游植物群落结构在时空分布上无显著性差异（P>0.05）,但收割组在收割后的不同阶段内差异较为明显,其细胞密度和生物量随着收割实验的结束逐渐降低。浮游植物与环境因子的相关性分析表明,水生植被覆盖度、总磷、总氮、溶解氧和叶绿素a浓度是影响浮游植物细胞密度和生物量变化的主要环境因子。综合陈瑶湖水质状态,本研究认为收割芡实并不能缓解浅水湖泊富营养化状况,研究结果为浅水湖泊水生植被的管理提供理论依据。     

Acidity status and phytoplankton species richness,standing crop,and community composition in Adirondack,New York,U.S.A. lakes

The mid-summer phytoplankton communities of more than 100 Adirondack lakes ranging in pH from 4.0 to 7.2 were characterized in relation to 25 physical-chemical parameters. Phytoplankton species richness declined significantly with increasing acidity. Acidic lakes (pH < 5.0) averaged fewer than 20 species while more circumneutral waters (pH > 6.5) averaged more than 33 species. Phytoplankton abundance was not significantly correlated with any of the measured physical-chemical parameters, but standing crop parameters, i.e., chlorophyll a and phytoplankton biovolume, did correlate significantly with several parameters. Midsummer standing crop correlated best with total phosphorus concentration but acidity status affected the standing crop-phosphorus relationship. Circumneutral waters of low phosphorus content, i.e. < 10 µg·1^–1 TP, averaged 3.62 µg·1^–1 chlorophyll a whereas acidic lakes of the same phosphorus content averaged only 1.96 µg·1^–1 chlorophyll a. The midsummer chlorophyll content of lakes of high phosphorus content, i.e. > 10 µg·1^–1 TP, was not significantly affected by acidity status.Adirondack phytoplankton community composition changes with increasing acidity. The numbers of species in midsummer collections within all major taxonomic groups of algae are reduced with increasing acidity. The midsummer phytoplankton communities of acidic Adirondack lakes can generally be characterized into four broad types; 1) the depauperate clear water acid lake assemblage dominated by dinoflagellates, 2) the more diverse oligotrophic acid lake community dominated by cryptomonads, green algae, and chrysophytes, 3) the productive acid lake assemblage dominated by green algae, and 4) the chrysophyte dominated community. The major phytoplankton community types of acid lakes are associated with different levels of nutrients, aluminum concentrations, and humic influences.     

The composition and abundance of phytoplankton in Lake Bukoni,western Uganda

Lake Bukoni is one of the crater lakes in western Uganda. Investigations into this lake is limited compared to other African lakes. Data on phytoplankton ecology in the lake are lacking. Phytoplankton consists of a community of photosynthetic, microscopic plants adapted to suspension in water. They constitute ‘hidden flora’ which make an important contribution to the primary productivity of a water mass. Some phytoplankton taxa, among them species belonging to Cyanophyta, are known to influence ecological transformations and to cause health hazards in water bodies that are used by humans. From July 2004 to December 2005, phytoplankton was collected from two sites (inshore and offshore) in Lake Bukoni. An inverted microscope, Sedgwick counting chamber and multiple tally denominator were used to quantify the phytoplankton. Phytoplankton was dominated by nonheterocystous cyanoprokaryotes especially Lyllgbya limnetica followed by the diatoms Synedra ulna and Fragillaria mutabilis. The inshore site had more phytoplankton species. Differences in phytoplankton diversity and density were mainly attributed to mixing and presence of macrophytes. The occurrence of large numbers of cyanoprokaryotes poses a potential health hazard to the local people who utilize the water from Lake Bukoni. The dominance of cyanoprokaryotes might result in ecological transformations like loss of biodiversity.     

Winter phytoplankton community structure in three shallow temperate lakes during ice cover

The general model of seasonal phytoplankton succession in temperate lakes suggests that winter phytoplankton growth is minimal under ice-cover. However, some studies have found diverse phytoplankton communities during winter. The primary objectives of this study were to determine the species composition and the changes in the winter phytoplankton community structure under the ice. For 2 consecutive winters, phytoplankton samples were collected under ice-cover at 4 sites on 3 lakes in Arrowwood National Wildlife Refuge (ANWR), near Pingree, North Dakota. Ninety taxa were identified and enumerated. Densities of several of these taxa frequently exceeded 10⁶ cells l^–1. The winter phytoplankton communities in these lakes were dominated by flagellates, principally cryptomonads, a synurophyte (Synura uvella), small chrysophytes (Chrysococcus spp., Kephyrion spp.) and a dinoflagellate (Peridinium aciculiferum), as well as non-flagellate microchlorophytes (Monoraphidium spp., Ankistrodesmus spp., and Pseudodictyosphaerium sp.), a cyanobacterium (Gloeocapsa aeruginosa) and centric diatoms (Stephanodiscus minutulus, S. parvus and Cyclotella meneghiniana).     

Cyanobacterial dynamics in shallow Lake Apopka (Florida,U.S.A.) before and after the shift from a macrophyte‐dominated to a phytoplankton‐dominated state

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Species‐specific separation of lake plankton reveals divergent food assimilation patterns in rotifers

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Effects of Nutrients,Fish, Charophytes and Algal Sediment Recruitment on the Phytoplankton Ecology of a Shallow Lake

The influence of nutrient levels, fish density and charophytes on the phytoplankton ecology of a shallow Mediterranean lake was studied by means of an in situ mesocosm experiment. Different levels of nutrients and fish were added over the course of an eight‐week experiment, during which charophytes were removed towards the end. After submerged plants were removed, phytoplankton biomass increased significantly in all the mesocosms, with a reduction of algal diversity and species richness and dominance of cyanobacteria. Cyanobacteria recruited from the sediment played an important role in sustaining planktonic populations of the dominant species. Oscillatorial species (Pseudanabaena galeata, Planktolyngbya limnetica) dominated at higher nutrient levels (0.5–1 mg L^–1 P and 5–10 mg L^–1 N) and chroococcal cyanobacteria (Merismopedia tenuissima) at lower nutrient levels. Density of planktivorous fish had little effect on the algal recruitment from the sediment and phytoplankton biomass and diversity. (© 2008 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

Do cyanobacteria dominate in eutrophic lakes because they fix atmospheric nitrogen?

1. The sources of nitrogen for phytoplankton were determined for a bloom‐prone lake as a means of assessing the hypothesis that cyanobacteria dominate in eutrophic lakes because of their ability to fix nitrogen when the nitrogen : phosphorous (N : P) supply ratio is low and nitrogen a limiting resource. 2. Nitrogen fixation rates, estimated through acetylene reduction with ¹⁵N calibration, were compared with ¹⁵N‐tracer estimates of ammonium and nitrate uptake monthly during the ice‐free season of 1999. In addition, the natural N stable isotope composition of phytoplankton, nitrate and ammonium were measured biweekly and the contribution of N₂ to the phytoplankton signature estimated with a mixing model. 3. Although cyanobacteria made up 81–98% of phytoplankton biomass during summer and autumn, both assays suggested minimal N acquisition through fixation (<9% for the in‐situ incubations; <2% for stable isotope analysis). Phytoplankton acquired N primarily as ammonium (82–98%), and secondarily as nitrate (15–18% in spring and autumn, but <5% in summer). Heterocyst densities of <3 per 100 fixer cells confirmed low reliance on fixation. 4. The lake showed symptoms of both light and nitrogen limitation. Cyanobacteria may have dominated by monopolizing benthic sources of ammonium, or by forming surface scums that shaded other algae.