Substantial differences in littoral fish community structure and dynamics in subtropical and temperate shallow lakes

1. Fish play a key role in the functioning of temperate shallow lakes by affecting nutrient exchange among habitats as well as lake trophic structure and dynamics. These processes are, in turn, strongly influenced by the abundance of submerged macrophytes, because piscivorous fish are often abundant at high macrophyte density. Whether this applies to warmer climates as well is virtually unknown. 2. To compare fish community structure and dynamics in plant beds between subtropical and temperate shallow lakes we conducted experiments with artificial submerged and free‐floating plant beds in a set of 10 shallow lakes in Uruguay (30°–35°S) and Denmark (55°–57°N), paired along a gradient of limnological characteristics. 3. The differences between regions were more pronounced than differences attributable to trophic state. The subtropical littoral fish communities were characterised by higher species richness, higher densities, higher biomass, higher trophic diversity (with predominance of omnivores and lack of true piscivores) and smaller body size than in the comparable temperate lakes. On average, fish densities were 93 ind. m⁻² (±10 SE) in the subtropical and 10 ind. m⁻² (±2 SE) in the temperate lakes. We found a twofold higher total fish biomass per unit of total phosphorus in the subtropical than in the temperate lakes, and as fish size is smaller in the former, the implication is that more energy reaches the littoral zone fish community of the warmer lakes. 4. Plant architecture affected the spatial distribution of fish within each climate zone. Thus, in the temperate zone fish exhibited higher densities among the artificial free‐floating plants while subtropical fish were denser in the artificial submerged plant beds. These patterns appeared in most lakes, regardless of water turbidity or trophic state. 5. The subtropical littoral fish communities resembled the fish communities typically occurring in temperate eutrophic and hypertrophic lakes. Our results add to the growing evidence that climate warming may lead to more complex and omnivory‐dominated food webs and higher density and dominance of smaller‐sized fish. This type of community structure may lead to a weakening of the trophic cascading effects commonly observed in temperate shallow lakes and a higher risk of eutrophication.     

Comparative analysis of plankton rotifer biomass in large Estonian lakes

The number and biomass of rotifers in large eutrophic lakes is small in winter, reaches a maximum in spring or summer and decreases to a winter minimum. The dynamics of rotifer participation as part of total zooplankton is opposite to their absolute number: the role of rotifers in zooplankton is great in winter, starts decreasing in spring, reaches a minimum in summer and increases again to its winter maximum. The number and biomass of rotifers is proportional to the trophy of the waterbody, but in the case of some species this correlation is inverse.     

Effects of habitat complexity on community structure and predator avoidance behaviour of littoral zooplankton in temperate versus subtropical shallow lakes

1. Structural complexity may stabilise predator–prey interactions and affect the outcome of trophic cascades by providing prey refuges. In deep lakes, vulnerable zooplankton move vertically to avoid fish predation. In contrast, submerged plants often provide a diel refuge against fish predation for large‐bodied zooplankton in shallow temperate lakes, with consequences for the whole ecosystem. 2. To test the extent to which macrophytes serve as refuges for zooplankton in temperate and subtropical lakes, we introduced artificial plant beds into the littoral area of five pairs of shallow lakes in Uruguay (30°–35°S) and Denmark (55°–57°N). We used plants of different architecture (submerged and free‐floating) along a gradient of turbidity over which the lakes were paired. 3. We found remarkable differences in the structure (taxon‐richness at the genus level, composition and density) of the zooplankton communities in the littoral area between climate zones. Richer communities of larger‐bodied taxa (frequently including Daphnia spp.) occurred in the temperate lakes, whereas small‐bodied taxa characterised the subtropical lakes. More genera and a higher density of benthic/plant‐associated cladocerans also occurred in the temperate lakes. The density of all crustaceans, except calanoid copepods, was significantly higher in the temperate lakes (c. 5.5‐fold higher). 4. Fish and shrimps (genus Palaemonetes) seemed to exert a stronger predation pressure on zooplankton in the plant beds in the subtropical lakes, while the pelagic invertebrate Chaoborus sp. was slightly more abundant than in the temperate lakes. In contrast, plant‐associated predatory macroinvertebrates were eight times more abundant in the temperate than in the subtropical lakes. 5. The artificial submerged plants hosted significantly more cladocerans than the free‐floating plants, which were particularly avoided in the subtropical lakes. Patterns indicating diel horizontal migration were frequently observed for both overall zooplankton density and individual taxa in the temperate, but not the subtropical, lakes. In contrast, patterns of diel vertical migration prevailed for both the overall zooplankton and for most individual taxa in the subtropics, irrespective of water turbidity. 6. Higher fish predation probably shapes the general structure and dynamics of cladoceran communities in the subtropical lakes. Our results support the hypothesis that horizontal migration is less prevalent in the subtropics than in temperate lakes, and that no predator‐avoidance behaviour effectively counteracts predation pressure in the subtropics. Positive effects of aquatic plants on water transparency, via their acting as a refuge for zooplankton, may be generally weak or rare in warm lakes.     

Rotifer community structure in three shallow lakes: seasonal fluctuations and explanatory factors

The present work aimed at studying the rotifer communities of three shallow eutrophic lakes in Portugal (lakes Mira, Vela and Linhos). At the time of the study, Mira and Vela faced large inputs of allochthonous nutrients, while Linhos was facing terrestrialisation, with cycles of dominance-senescence of macrophytes. The three lakes differed in terms of their abiotic features, with Linhos presenting very high nutrient levels and low pH, while Vela and Mira shared most of the characteristics. The rotifer communities of these two lakes were poorly diversified but highly abundant (max. > 2000 ind l⁻¹), with a clear dominance of eurytopic euplanktonic species (mainly Keratella cochlearis). On the other hand, Linhos presented lower abundances (<1000 ind l⁻¹) but higher species richness, mainly due to macrophyte-associated taxa, such as the littoral genera Lepadella, Testudinella and Squatinella. In all lakes, summertime represented a peak in terms of abundance and diversity. Canonical correspondence analysis (CCA) identified two main environmental gradients that shape up the rotifer assemblages: a temporal gradient, mainly related to temperature, and a eutrophy gradient, associated with nitrogenous nutrients. The latter gradient is clearly dependent on between-lake variation, due to the high nutrient levels observed in lake Linhos. Variance partitioning using CCA revealed that the largest portion (27.5%) of the total variation explained (52.1%) was attributed to the interaction between lake and environmental variables.     

Planktonic ciliate community structure in shallow lakes of lowland Western Europe

Temperate shallow meso- to eutrophic lakes can exist in one of two alternative states with contrasting foodwebs, referred to as the clear-water and the turbid state. We describe the planktonic ciliate communities of such lakes based on a survey of 66 northwestern European lakes. Ciliates were enumerated and identified to species level according to the quantitative protargol staining technique. Ciliate biomass was on average twice as high in the turbid than in the clear-water lakes. The ciliate communities were dominated by oligotrichs and protostomatids, and no differences in functional composition or α-diversity could be detected between turbid and clear-water lakes, although β-diversity tended to be higher in the latter. At the species level, however, community structure strongly differed between turbid and clear-water lakes, and several indicator species could be identified for the different lake categories. Variation partitioning showed that nutrient status did not explain ciliate community structure independent of the alternative states, while lake area was identified as an additional structuring factor for the ciliate communities. These results stress the importance of the ecosystem structure in shaping ciliate communities in temperate shallow lakes and suggest that nutrient status has little direct effect on ciliate community structure in such lakes.     

Bacterioplankton in the littoral and pelagic zones of subtropical shallow lakes

We measured bacterioplankton (phylotypes detected by fluorescent in situ hybridisation, morphometric forms, abundance and production) in samples collected in summer in the littoral and pelagic zones of 10 subtropical shallow lakes of contrasting area (from 13 to 80,800 ha). Compared to the pelagic zones, the littoral zones were overall characterised by higher macrophyte dominance and lower concentrations of total phosphorus and alkalinity and higher concentrations of dissolved organic carbon (DOC) and humic substances. Similarities of bacterial production and biomass turnover and density of active phylotypes and morphotype proportions were related to similarities in a set of environmental variables (including nutrients, humic substances content, predator density and phytoplankton biomass), and some additionally to lake area. Horizontal heterogeneity in bacterioplankton variables (littoral versus pelagic) increased with lake area. Bacterioplankton biomass and production tended to be lower in the littoral zone than in the pelagic zone despite higher concentrations of DOC and humic substances. A likely explanation is higher predation on bacterioplankton in the littoral zone, although allelophatic effects exerted by macrophytes cannot be excluded. Our results indicate that organic cycling via bacterioplankton may be less efficient in the littoral zone than in the pelagic zone of shallow lakes.     

Winter phytoplankton community structure in three shallow temperate lakes during ice cover

The general model of seasonal phytoplankton succession in temperate lakes suggests that winter phytoplankton growth is minimal under ice-cover. However, some studies have found diverse phytoplankton communities during winter. The primary objectives of this study were to determine the species composition and the changes in the winter phytoplankton community structure under the ice. For 2 consecutive winters, phytoplankton samples were collected under ice-cover at 4 sites on 3 lakes in Arrowwood National Wildlife Refuge (ANWR), near Pingree, North Dakota. Ninety taxa were identified and enumerated. Densities of several of these taxa frequently exceeded 10⁶ cells l^–1. The winter phytoplankton communities in these lakes were dominated by flagellates, principally cryptomonads, a synurophyte (Synura uvella), small chrysophytes (Chrysococcus spp., Kephyrion spp.) and a dinoflagellate (Peridinium aciculiferum), as well as non-flagellate microchlorophytes (Monoraphidium spp., Ankistrodesmus spp., and Pseudodictyosphaerium sp.), a cyanobacterium (Gloeocapsa aeruginosa) and centric diatoms (Stephanodiscus minutulus, S. parvus and Cyclotella meneghiniana).     

Distribution and coexistence patterns of phytoplankton in subtropical shallow lakes and the role of niche-based and spatial processes

Phytoplankton is an important microbial component in many ecosystems, and thus, knowing the predictive variables of its distribution is very valuable. In this study, we evaluated the roles of niche-based and spatial processes on phytoplankton communities of nine lakes in southern Brazil (spatial distance covered of 220 km). Variation partitioning analysis was employed to determine the relative contributions of environmental and spatial variables on the distribution of prokaryotic (PRP) and eukaryotic (EUP) components of phytoplankton at multispatial extents. C-score analysis was carried out, at intra- and interlake scales, to examine whether phytoplankton species coexist less or more than expected by chance (taxa segregation and aggregation, respectively). Our results showed that, at broader spatial scales, both PRP and EUP distributions are mainly influenced by pure space, while at finer spatial scales, the two groups are mainly influenced by pure environment. PRP distribution at broader spatial scales was also significantly influenced by spatially structured environment, and was in general more affected by spatial variables than by EUP. Finally, a taxa segregation pattern was observed at the interlake scale. In general, our results suggest that niche-based processes are more important in structuring phytoplankton on the local scale while spatial processes on the regional scale.     

Relationships between microcystins and environmental parameters in 30 subtropical shallow lakes along the Yangtze River, China

1. A survey of 30 subtropical shallow lakes in the middle and lower reaches of the Yangtze River area in China was conducted during July–September in 2003–2004 to study how environmental and biological variables were associated with the concentration of the cyanobacterial toxin microcystin (MC). 2. Mean MC concentration in seasonally river‐connected lakes (SL) was nearly 33 times that in permanently river‐connected lakes (RL), and more than six times that in city lakes (NC) and non‐urban lakes (NE) which were not connected to the Yangtze River. The highest MC (8.574 μg L^?1) was detected in Dianshan Lake. 3. MC‐RR and MC‐LR were the primary toxin variants in our data. MC‐RR, MC‐YR and MC‐LR were significantly correlated with Chl a, biomass of cyanobacteria, Microcystis and Anabaena, indicating that microcystins were mainly produced by Microcystis and Anabaena sp. in these lakes. 4. Nonlinear interval maxima regression indicated that the relationships of Secchi depth, total nitrogen (TN) : total phosphorus (TP) and NH with MC were characterised by negative exponential curves. The relationships between MC and TN, TP, NO + NO were fitted well with a unimodal curve. 5. Multivariate analyses by principal component and classifying analysis indicated that MC was mainly affected by Microcystis among the biological factors, and was closely related with temperature among physicochemical factors.     

Community structure and diel migration of zooplankton in shallow brackish lakes: role of salinity and predators

Diel horizontal migration (DHM), where zooplankton moves towards macrophytes during daytime to avoid planktivorous fish, has been reported as a common migration pattern of zooplankton in shallow temperate freshwater lakes. However, in shallow eutrophic brackish lakes, macrophytes seem not to have the same refuge effect, as these lakes may remain turbid even at relatively high macrophyte abundances. To investigate the extent to which macrophytes serve as a refuge for zooplankton at different salinities, we introduced artificial plants mimicking submerged macrophytes in the littoral zone of four shallow lakes, with salinities ranging from almost freshwater (0.3) to oligohaline waters (3.8). Furthermore, we examined the effects of different salinities on the community structure. Diel samples of zooplankton were taken from artificial plants, from areas where macrophytes had been removed (intermediate areas) and, in two of the lakes, also in open water. Fish and macroinvertebrates were sampled amongst the artificial plants and in intermediate areas to investigate their influence on zooplankton migration. Our results indicated that diel vertical migration (DVM) was the most frequent migration pattern of zooplankton groups, suggesting that submerged macrophytes were a poor refuge against predation at all salinities under study. Presumably, this pattern was the result of the relatively high densities of small planktivorous fish and macroinvertebrate predators within the submerged plants. In addition, we found major differences in the composition of zooplankton, fish and macroinvertebrate communities at the different salinities and species richness and diversity of zooplankton decreased with increasing salinity. At low salinities both planktonic/free-swimming and benthic/plant-associated cladocerans occurred, whilst only benthic ones occurred at the highest salinity. The low zooplankton biomass and overall smaller-bodied zooplankton specimens may result in a lower grazing capacity on phytoplankton, and enhance the turbid state in nutrient rich shallow brackish lakes.     

Daphnia community analysis in shallow Kenyan lakes and ponds using dormant eggs in surface sediments

1. Water fleas of the genus Daphnia are considered rare in tropical regions, and information on species distribution and community ecology is scarce and anecdotal. This study presents the results of a survey of Daphnia species distribution and community composition in 40 standing waterbodies in southern Kenya. The study sites cover a wide range of tropical standing aquatic habitats, from small ephemeral pools to large permanent lakes between approximately 700 and 2800 m a.s.l. Our analysis combines data on Daphnia distribution and abundance from zooplankton samples and dormant eggs in surface sediments. 2. Nearly 70% (27 of 40) of the sampled waterbodies were inhabited by Daphnia. Although their abundance in the active community was often very low, this high incidence shows that Daphnia can be equally widespread in tropical regions as in temperate regions. 3. Analysis of local species assemblages from dormant eggs in surface sediments was more productive than snapshot sampling of zooplankton communities. Surface‐sediment samples yielded eight Daphnia species in total, and allowed the detection of Daphnia in 25 waterbodies; zooplankton samples revealed the presence of only four Daphnia species in 16 waterbodies. 4. Daphnia barbata, D. laevis, and D. pulex were the most frequently recorded and most abundant Daphnia species. Canonical correspondence analysis of species–environment relationships indicates that variation in the Daphnia community composition of Kenyan waters was best explained by fish presence, temperature, macrophyte cover and altitude. Daphnia barbata and D. pulex tended to co‐occur with each other and with fish. Both species tended to occur in relatively large (>10 ha) and deeper (>2 m) alkaline waters (pH 8.5). Daphnia laevis mainly occurred in cool and clear, macrophyte‐dominated lakes at high altitudes.     

Indirect effects of fish community structure on submerged vegetation in shallow,eutrophic lakes: an alternative mechanism

The loss of submerged macrophytes during eutrophication of shallow lakes is a commonly observed phenomenon. The proximate reason for this decline is a reduction of available light due to increasing phytoplankton and/or epiphyton biomass. Here we argue that the ultimate cause for the transition from a macrophyte-dominated state to a phytoplankton-dominated state is a change in fish community structure. A catastrophic disturbance event (e.g. winterkill) acting selectively on piscivores, cascades down food chains, eventually reducing macrophyte growth through shading by epiphyton, an effect that is reinforced by increasing phytoplankton biomass. The transition back from the phytoplankton to the macrophyte state depends on an increase in piscivore standing stock and a reduction of planktivores. A conceptual model of these mechanisms is presented and supported by literature data and preliminary observations from a field experiment.     

Resuspension of algal cells by benthivorous fish boosts phytoplankton biomass and alters community structure in shallow lakes

1. Positive effects of fish on algal biomass have variously been attributed to cascading top‐down effects and to nutrient enrichment by fish excretion. 2. Here, we used a combination of field and laboratory approaches to test an additional hypothesis, namely that the physical resuspension of settled algal cells by fish enhances algal biomass and alters community composition. 3. A multi‐lake survey showed that phytoplankton biomass and the fraction of motile algae increased with the concentration of inorganic suspended solids. This correlation could not be explained by wind‐induced resuspension because of the small size of the lakes. 4. In an enclosure experiment, chlorophyll‐a concentration, phytoplankton abundance and inorganic suspended solids increased significantly in the presence of Cyprinus carpio (common carp), but only if the fish had access to the sediment. No such effects were seen when a net prevented carp reaching the sediment. 5. The effects of enhanced nutrients and reduced zooplankton grazing as a result of fish feeding could not (fully) explain these observations, suggesting that the resuspension by carp of settled algae from a surface film on the sediment was the major factor in the outcome of the experiment. 6. An increase in diatoms and green algae (organisms with a relatively large sedimentation velocity) only in enclosures where carp could reach the sediment supported this view. 7. Several lines of evidence indicate that fish‐induced resuspension of algal cells from the sediment is an important mechanism that affects phytoplankton biomass and community composition in shallow lakes.     

Role of macrophytes in the variability of zooplankton community structure in the littoral zone of shallow lakes

Distribution, diurnal variability, aggregation of zooplankton in the littoral zone of lakes and effect of various macrophyte species on the structure of its community are considered. It is shown that the horizontal migrations of zooplankton, both direct and reverse ones, are caused mainly by the pressure of fish. The effect of predacious zooplankton is less important and is directed mainly at small-sized species. The intensity of horizontal migrations of zooplankton decreases with depth, while the effect of shore avoidance is observed for the large-sized zooplankton species and is caused not only by the pressure of fish but also by other factors, most likely abiotic. The problem of interaction between macrophytes and zooplankton cannot be reduced to the role of macrophytes as a refuge. Allelopathic properties of macrophytes, competitive relations between separate zooplankton species in macrophyte thickets, as well as the effect of predacious invertebrates associated with macrophytes on zooplankton remain unclear. The role of macrophytes as a factor causing changes in hydrodynamic processes in the littoral regions of lakes is also unknown.     

Submersed macrophytes play a key role in structuring bacterioplankton community composition in the large, shallow, subtropical Taihu Lake, China

Within-lake horizontal heterogeneity of bacterioplankton community composition (BCC) was investigated in the large and shallow subtropical Taihu Lake (2338 km(2), maximum depth < 3 m). Samples were collected at 17 sites along a trophic gradient ranging from mesotrophic to hypertrophic areas in August and September 2004. These sites cover two alternative stable states of shallow lakes, which are basically characterized by the dominance or the lack of submerged macrophytes. In the case of Taihu Lake, the macrophyte-dominated state is characterized by clear water and immobilized sediment, and the state largely lacking macrophytes is characterized by the dominance of phytoplankton, frequent wind-driven re-suspension of sediments, and a high turbidity. Three different methods, i.e. denaturing gradient gel electrophoresis (DGGE), reverse line blot hybridization (RLB) with probes targeting 17 freshwater bacterial groups, and 16S rRNA gene cloning and sequencing, were used for analysis of BCC. The BCC varied strongly between the two alternative ecological states, but less pronounced between phytoplankton-dominated sites even spanning chlorophyll a gradients from 16.5 (mesotrophic) to 229.8 microg l(-1) (hypertrophic). The 16S rRNA gene library representing the turbid water state contained many sequences closely related to sequences previously obtained from soil or freshwater sediment samples. Furthermore, sequences representing two new lineages of freshwater Actinobacteria were obtained from the investigated samples. Comparative statistical analyses of BCC along the investigated ecological gradients revealed that the dominance of submersed macrophytes was the most influential factor on BCC, responsible for a major part of the observed within-habitat heterogeneity of BCC in Taihu Lake.     

Unravelling fish community assembly in shallow lakes: Insights from functional and phylogenetic diversity

Reviews in Fish Biology and Fisheries - Global biodiversity loss has increased interest in identifying the patterns and mechanisms that shape community assembly. Growing empirical evidence...     

Cladoceran and rotifer grazing on bacteria and phytoplankton in two shallow eutrophic lakes: in situ measurement with fluorescent microspheres

Metazooplankton grazing on bacteria and on the phytoplanktonof various sizes was estimated in shallow eutrophic lakes Kaiavereand Võrtsjärv (Estonia) by in situ feeding experimentswith fluorescent microspheres (diameters 0.5 µm for bacteriaand 3, 6 and 24 µm for phytoplankton). Zooplankton communitycomposition, abundance and food density were important factorsdetermining grazing rates in these lakes. Cladocerans and rotifersfiltering rates (FR) and ingestion rates (IR) on bacteria andphytoplankton were several times higher in Lake Kaiavere wherebacterivorous rotifers and Daphnia contributed more to zooplanktonassemblage. While cladocerans were generally the main phytoplanktonconsumers, both lakes differed with respect to the groups ofbacterivores. Based on consumption of fluorescent microspheres,the metazooplankton grazing rates were relatively low and hadlow impact on production and standing stock of bacteria andingestible phytoplankton (<30 µm). On average, 0.5and 0.1% of standing stock of bacteria and 2.6 and 1.0% of standingstock of ingestible phytoplankton was grazed daily by metazooplanktonin lakes Kaiavere and Võrtsjärv, respectively. Thatcorresponded to daily grazing of 4.1% of the bacterial productionand 0.43% of the total primary production (PP) by metazooplanktonin Lake Kaiavere compared with 4.3 and 0.06% in Lake Võrtsjärv,respectively. The results suggest that the majority of consumptionof the bacterial and phytoplankton PP is most likely channelledthrough the microbial loop.     

Zooplankton community composition of lakes in the Yukon and Northwest Territories (Canada): relationship to physical and chemical limnology

We analysed associations between zooplankton species composition and local abiotic factors in 30 lakes located along a 900 km south-north transect from Whitehorse (Yukon Territory) to Inuvik (Northwest Territories). The lakes were situated in three broadly defined vegetation zones: (i) Boreal forest (between Whitehorse and Dawson City), (ii) alpine tundra (Ogilvie mountains north of Dawson City) and (iii) subarctic forest-tundra (near Inuvik). Lakes in the alpine tundra were characterised by lower conductivity, temperature, chlorophyll a and nutrients than those in the other two zones. Those in the forest-tundra were generally small and shallow, and had higher chlorophyll a concentrations than lakes further south. Lakes in forested catchments spanned a larger latitudinal range and exhibited a greater variety of physical and chemical characteristics. However, they were generally deeper, with higher conductivity, temperature and ionic concentrations. Forty-one zooplankton taxa were identified from the 30 lakes, of which the most frequently occurring were the rotifers Conochilus unicornis, Kellicottia longispina, Keratella cochlearis and Polyarthra vulgaris, the cladocerans Daphnia middendorffiana and Bosmina longirostris, and the copepods Leptodiaptomus pribilofensis, Heterocope septentrionalis and Cyclops spp. The lakes contained between two and fifteen species (mean = 6.9). Alpine tundra lakes contained slightly less species (mean = 5.8) than those at lower elevations; in particular the cladoceran fauna was depauperate or absent. Relationships among the lakes, species and environmental factors were examined using canonical correspondence analysis, with forward selection and associated Monte Carlo permutation tests. Chloride, silica and temperature showed statistically significant relationships with species distribution, and together these abiotic factors explained 25% of the variation in zooplankton communities within Yukon and Northwest Territories lakes.     

Seasonal variation of microbial eukaryotic community composition in the large,shallow, subtropical Taihu Lake,China

Microbial eukaryotic community (0.8–20 μm) composition and its seasonal variation were investigated in large, shallow, subtropical Lake Taihu located in Southeast China. The water samples were collected monthly from August 2006 to July 2007 at two sites distantly located in Meiliang Bay and Lake Center, which differed strongly in their trophic status and sediment resuspension. The microbial eukaryotic community compositions (MECC) were measured using denaturing gradient gel electrophoresis (DGGE) of PCR-amplified eukaryotic 18S rRNA gene fragments. Seasonal variations were related to environmental factors by means of redundancy analysis (RDA) in order to reveal the most important regulating factors. At both sites, the structures and Shannon–Wiener indices of the microbial eukaryotic communities displayed apparent seasonal variations, which were significantly related to environmental variables. There were significant intrahabitat differences in environmental factors regulating MECC, as well as in the seasonal dynamics of the two sites during the study period. At Meiliang Bay, the variations of total phosphorus concentration and cladocera abundance had the most profound impacts on the microbial eukaryotic community composition, while at Lake Center, the total nitrogen concentration and conductivity were most influential. Our results suggest that the DGGE method is a cost-effective way to analyze the seasonal dynamics of MECC and their interaction with environmental variables, which will provide new insights into the diversity and dynamics of MECC.