趋化因子及其受体家族分子适应性进化分析

Branch-Site模型是检测基因序列中单个密码子位点是否具有选择作用的统计学方法。该模型能有效地检测基因在进化历程中是否受到选择作用, 并预测出那些在进化过程中对功能分化有重要贡献的、受正选择作用的密码子位点。趋化因子是一类控制免疫细胞定向迁移的细胞因子, 其功能行使由趋化因子受体介导。该文用Branch-Site模型分析趋化因子及其受体基因家族的分子适应性, 发现只有少数种类基因受到正选择作用, 如RANTES、CCR5等。并预测出一些可能受到正选择作用的位点, 蛋白3D分析显示, 它们均位于趋化因子和相应受体相互作用的结构区域。     

鲤科鱼类胰岛素受体基因IRa和IRb酪氨酸激酶区CDS的分子变异和进化

胰岛素受体基因在调控细胞生长、分化和个体发育方面具有重要的生物学功能,研究基因功能区变异和分子进化对于理解鱼类不同物种之间胰岛素受体基因表达调控和个体尺寸控制具有重要意义.本研究在鲤科鱼类中选择37种代表性物种和5种鲤科外的鲤形目鱼类作为外类群,通过PCR扩增、克隆和测序,获得它们的IRa和IRbDNA序列,并提取CDS序列.分别基于IRa和IRb酪氨酸激酶区CDS序列,分析其分子变异和进化,以理解IR基因在鲤科鱼类中的基因分化特征.结果显示,采用UPGMA方法对IR基因家族构建的基因树中,鱼类IRa和IRb基因分别聚为单系群,说明鲤科鱼类IR基因复制后IRa和IRb基因分别进化为两类明显不同的基因.分子进化分析显示,基于IRa或IRb单个基因构建的鲤科鱼类MP树中各系群间进化速率无显著性差异,说明基因IRa在鲤科鱼类不同系群间受到相似的进化压力,基因IRb也是如此.尽管由IRa和IRbCDS推导出的酪氨酸激酶区氨基酸序列高度保守,但序列变异特征可清楚地显示该区中氨基酸序列的差异,蛋白质IRa和IRb酪氨酸激酶区中呈现出来的这种差异,预示着胰岛素受体IRa和IRb在信号传导中扮演不同的角色.     

HIV共受体—CC类趋化因子受体—5

ＨＩＶ共受体——ＣＣ类趋化因子受体┐５黄仕和秦椿华（卫生部武汉生物制品研究所,武昌４３００６０）（美国得克萨斯Ａ＆Ｍ大学毒理学系）关键词ＨＩＶ共受体ＣＣ类趋化因子受体－５继冯愈等发现融合素是嗜Ｔ细胞ＨＩＶ－１的融合辅助因子后,邓洪魁及其同事发现了初始...     

山羊BMPR-IB基因密码子偏好性及聚类分析

[目的]利用生物信息学分析山羊BMPR-IB基因密码子使用特征,对不同物种BMPR-IB基因通过不同的聚类方法进行分析。[方法]利用Usage Codon在线程序和Codon W软件分析山羊和其他物种BMPR-IB基因对密码子偏好性的使用情况,通过欧式平方距离和最小进化法分别进行聚类分析。[结果]山羊BMPR-IB基因无G/C碱基的使用倾向,GCC、CTG、CAG、CCC、AGA、AGT、GTG和TGA为山羊BMPR-IB基因的偏好密码子,其余53种密码子的使用较为均衡。通过最小进化法建立起来的不同物种间的系统发育分析结果与动物学分类一致,且不同物种BMPR-IB基因编码蛋白表达水平存在种属差异。[结论]BMPR-IB基因偏爱使用以A或T结尾的密码子,基于欧式距离系数建立起来的聚类和最大似然法构建的聚类不一致,造成这种差异的原因可能是在进化过程中单基因突变所引起的。     

趋化因子的研究进展

趋化因子家族分为4类（CXC、CC、C和CX3C）,估计有40～50种人类趋化因子.趋化因子及其受体的基因定位、结构和功能已逐渐阐明.它们在正常和非正常生理状态下起着重要的作用.     

啮齿目泌乳刺激素基因家族的分子进化研究

在大鼠基因组数据库中搜索得到两个泌乳刺激素基因家族的新成员。进一步分析显示该基因家族起源于啮齿目和其他哺乳动物分歧之后,而且大部分基因座位的重排在大、小鼠分歧之前已经完成。但PL-Ⅰ和PL-Ⅱ基因簇却是例外,它们在基因树上以物种特异的方式聚类。结合基因转换的检验、染色体上相对位置比较和基因重复时间估计的结果,认为啮齿目PL-Ⅰ和PL-Ⅱ基因是物种特异的,它们由一系列在大、小鼠分歧之后发生的基因重复事件形成。结果还揭示了在啮齿目泌乳刺激素基因家族进化过程中持续不断的发生了基因重复和基因分化事件。     

基于基因家族大小的比较研究脊椎动物的适应性进化

同源基因家族的拷贝数在不同物种间普遍存在差异,这种差异是由不同的基因得失速率引起。众所周知,基因拷贝数变异是特定物种表型创新的可能原因。本研究选取具有代表性的脊椎动物主要类群并跨约6亿年进化时间的64个物种,鉴定了它们的同源基因家族,揭示了脊椎动物基因家族大小的进化模式。结果表明:在推断的存在于脊椎动物最近共同祖先的6857个基因家族中,有6712个都在至少一个种系中发生了大小的变化,而且基因家族在大多数种系中都是收缩的;其中,霍氏树懒(Choloepus hoffmanni)中有最高的基因家族收缩水平,而在斑马鱼(Danio rerio)中则相反。基于脊椎动物基因家族大小进化的高度动态性,本研究从基因家族大小变化的角度鉴定了一些可能与特定脊椎动物类群进化有关的基因组信号。结果观察到在现存真骨鱼类最近共同祖先基因组中出现了可能因全基因组复制所导致的高比例的基因家族扩增现象,随后在后裔物种中发生基因收缩事件。此外,本研究还发现了硬骨鱼特异性的orphan基因可能对这些鱼类在水生环境中的适应性进化有所贡献的证据,如在有些硬骨鱼中orphan基因与鳍、尾巴、肾脏等发育有关。本研究结果有助于深入了解脊椎动物基因家族大小的进化,同时为理解脊椎动物基因组进化与表型多样性的联系提供了理论证据。     

化学趋化因子受体在HIV感染中的作用及其在AIDS治疗中的应用价值

化学趋化因子受体作为协同受体,为人免疫缺陷病毒（ＨＩＶ－１）进入细胞所必需。其中ＣＸＣＲ４被亲Ｔ细胞的病毒株利用,而ＣＣＲ５被亲巨噬细胞的病毒株利用,它们是大多数病毒株利用的协同受体。协同受体和ＣＤ４一起形成复合受体,ｇｐ１２０与之结合后发生构象改变,使ｇｐ４１暴露出来,引起膜的融合。ＨＩＶ协同受体发现为治疗艾滋病开辟了新的途径。利用趋化因子拮抗剂、单克隆抗体和天然配体封闭趋化因子受体可阻止ＨＩＶ     

太平洋牡蛎酪氨酸酶基因家族的系统发生分析

文章利用生物信息学方法对太平洋牡蛎(Crassostrea gigas Thunberg)酪氨酸酶基因家族的氨基酸序列特征、分类及系统发生进行了分析。结果表明, 太平洋牡蛎酪氨酸酶基因家族在进化过程中存在基因扩张现象, 其主要方式是基因重复。太平洋牡蛎酪氨酸酶可分为3种类型：分泌型 (Type A), 胞内型 (Type B)和具跨膜结构域型 (Type C)。根据太平洋牡蛎酪氨酸酶进化树分析, 发现Type A酪氨酸酶中, tyr18与其他Type A酪氨酸酶分化较大, 可能是较早分化出来的酪氨酸酶; Type B酪氨酸中的tyr2和tyr9以及Type C中的tyr8为较早分化出的酪氨酸酶。系统发生树分析发现太平洋牡蛎酪氨酸酶的聚类受酪氨酸酶类型以及基因位置的影响, 其分泌型酪氨酸酶首先与头足类分泌型酪氨酸酶聚在一起, 然后与线形动物门分泌型酪氨酸酶聚在一起, 与腔肠动物门分泌型酪氨酸酶分化明显。太平洋牡蛎胞内型酪氨酸酶自身分化较大, 总体上与线性动物门、其他软体动物胞内型酪氨酸酶聚为一支, 与扁形动物门、脊索动物门、腔肠动物门胞内型酪氨酸酶分化较大。太平洋牡蛎具跨膜结构域型酪氨酸酶与扁形动物门、环形动物门以及脊索动物门具跨膜结构域型酪氨酸酶分化明显, 与合浦珠母贝具跨膜结构域型酪氨酸酶聚为一支。这表明双壳类的Type C型酪氨酸酶与其他物种的同源酶的进化差异较大。文章首次探讨了太平洋牡蛎酪氨酸酶家族分类、分化及系统发生, 以期对太平洋牡蛎酪氨酸酶基因家族的理论研究和实际应用提供依据。     

趋化因子受体与信号转导

趋化因子受体是一类表达于不同类型细胞上的含有7个跨膜区的G蛋白偶联受体超家族,通过与趋化因子作用参与细胞的生长、发育、分化、凋亡、组织分布等,同时亦是HIV的协同受体。它可激活磷脂酶、脂类激酶、蛋白激酶、调节细胞Ca^2 浓度,激活JAK／STAT途径,引发一系列的信号转导通路。     

CC趋化因子偶联受体信号途径

Thechemokinesareafamilyofproinflammatorycytokinesthatactthroughcellsurfacereceptorstoregulatenumerousroutinephysiologicalandpathophysiologicalprocesses,includinghematopoiesis,T cellactivation ,angiogenesis,inflammatorydiseasesaswellasHIV 1infection[1,2 ].Thesesmallpeptidesaretypicallycomposedof 70 - 1 30aminoacidsandarecharacterizedbythepresenceoftwodisulphidebondsformedbetweenfourconservedcysteineresidues.Chemokinesareclassifiedintofoursubfamiliesaccordingtothepatternofconservedcysteinesinth…     

Abduction of Chemokine Elements by Herpesviruses

Chemokines play a key role in orchestrating leukocytic recruitment during inflammatory responses, including those to viral infections. Chemokines are soluble cytokines which mediate their effects through specific G protein-coupled, seven-transmembrane receptors which are expressed on a wide range of cells, including monocytes, T-cells, dendritic cells, and NK cells. Analyses of herpesvirus genomes have revealed that these viral pathogens encode their own versions of both chemokines and chemokine receptors. Viral genes encoding chemokine elements were likely to have been acquired from the host genome and have been remodeled during virus evolution to presumably optimize function or acquire new properties not displayed by their cellular homologues. Virus-encoded chemokines and chemokine receptors are important players in the continuing confrontation between viruses and their mammalian hosts. Detailed characterization of these elements will provide a better understanding of how the immune system responds to viral infection and may suggest new antiviral drug targets and new avenues for the development of antiviral therapies. We will review here the chemokine elements encoded by herpesviruses and how they may aid viral infection and propagation.     

Cattle and chemokines: evidence for species-specific evolution of the bovine chemokine system

The chemokine system comprises a family of small chemoattractant molecules that have roles in both the healthy and diseased organism. Chemokines act by binding specific receptors on the target cell surface and inducing chemotaxis. The human chemokine system is well characterized, with approximately fifty chemokines identified that fall into four families. The chemokines and their receptors are promiscuous in that one chemokine can often bind several receptors, and vice versa. Study of the bovine chemokine system has been restricted to date to a handful of chemokines, and the identification of bovine chemokines is largely based on the closest human homologue. This method of identification is prone to error and may result in the misassumption of function of a particular chemokine. Here, we review current knowledge of bovine chemokines and reassess the bovine chemokine system based on phylogenetic and syntenic approaches. The bovine chemokine system, for the most part, shows high similarity to the chemokine system of other mammals such as humans; however, differences have been identified. Cattle possess fewer chemokines than humans, yet also possess chemokines that have no obvious homologue in the human system. These 'missing' and 'novel' chemokines may represent functional differences between the bovine and human chemokine systems that may affect the way in which these species are able to respond to specific pathogen repertoires.     

趋化因子及其受体介导的细胞迁移与移植物抗宿主病

移植物抗宿主病(graft-versus-hostdisease,GVHD)是同种异基因骨髓移植中的重要并发征。供者T细胞在输注入受者体内后迁移进入淋巴组织,识别受者同种异基因抗原,被受者抗原递呈细胞(antigenpresentingcell,APC)激活,进而活化、增殖分化,介导急性GVHD的发生。现有的研究已表明,活化的异体效应性T细胞经淋巴组织迁移进入黏膜组织以及实质性靶器官,如消化道、肝脏、肺脏和皮肤,进而造成这些器官和组织的损伤。因此,分子间相互作用尤其是趋化因子及其受体介导的效应性细胞的迁移是GVHD发生发展过程中关键的一环,受到了广泛的关注。进一步以趋化因子及其受体为靶标,亦可能形成有效的免疫生物学治疗,具有广阔的应用前景。     

Chemokine receptors

Although chemokines were originally defined as host defense proteins it is now clear that their repertoire of functions extend well beyond this role. For example chemokines such as MGSA have growth regulatory properties while members of the CXC chemokine family can be mediators or inhibitors of angiogenesis and may be important targets for oncology. Recent work shows that the chemokine receptor CXCR4 and its cognate ligand SDF play important roles in the development of the immune, circulatory and central nervous systems. In addition, chemokine receptors play an important role in the pathogenesis of the AIDS virus, HIV-1. Taken together these findings expand the biological importance of chemokines from that of simple immune modulators to a much broader biological role than was at first appreciated and these and other properties of the chemokine receptor family are discussed in detail in this review.     

Defining the origins and evolution of the chemokine/chemokine receptor system

The chemokine system has a critical role in mammalian immunity, but the evolutionary history of chemokines and chemokine receptors are ill-defined. We used comparative whole genome analysis of fruit fly, sea urchin, sea squirt, pufferfish, zebrafish, frog, and chicken to identify chemokines and chemokine receptors in each species. We report 127 chemokine and 70 chemokine receptor genes in the 7 species, with zebrafish having the most chemokines, 63, and chemokine receptors, 24. Fruit fly, sea urchin, and sea squirt have no identifiable chemokines or chemokine receptors. This study represents the most comprehensive analysis of the chemokine system to date and the only complete characterization of chemokine systems outside of mouse and human. We establish a clear evolutionary model of the chemokine system and trace the origin of the chemokine system to approximately 650 million years ago, identifying critical steps in their evolution and demonstrating a more extensive chemokine system in fish than previously thought.     

Chemokines and chemokine receptors expression in the lesions of patients with American cutaneous leishmaniasis

American cutaneous leishmaniasis (ACL) presents distinct active clinical forms with different grades of severity, known as localised (LCL), intermediate (ICL) and diffuse (DCL) cutaneous leishmaniasis. LCL and DCL are associated with a polarised T-helper (Th)1 and Th2 immune response, respectively, whereas ICL, or chronic cutaneous leishmaniasis, is associated with an exacerbated immune response and a mixed cytokine expression profile. Chemokines and chemokine receptors are involved in cellular migration and are critical in the inflammatory response. Therefore, we evaluated the expression of the chemokines CXCL10, CCL4, CCL8, CCL11 and CXCL8 and the chemokine receptors CCR3, CXCR3, CCR5 and CCR7 in the lesions of patients with different clinical forms of ACL using immunohistochemistry. LCL patients exhibited a high density of CXCL10+, CCL4+ and CCL8+ cells, indicating an important role for these chemokines in the local Th1 immune response and the migration of CXCR3+ cells. LCL patients showed a higher density of CCR7+ cells than ICL or DCL patients, suggesting major dendritic cell (DC) migration to lymph nodes. Furthermore, DCL was associated with low expression levels of Th1-associated chemokines and CCL11+ epidermal DCs, which contribute to the recruitment of CCR3+ cells. Our findings also suggest an important role for epidermal cells in the induction of skin immune responses through the production of chemokines, such as CXCL10, by keratinocytes.     

Chemokine regulation of neutrophil function in tumors

The role of neutrophils in cancer and metastasis is still debated and controversial since they have been shown to be endowed with both pro- and antitumor functions. These contradictory results seem to be now explained by recent discoveries of tumor-associated neutrophils plasticity and multiple neutrophil subsets.Chemokines and chemokine receptors are known to tightly regulate the release of neutrophils from the bone marrow, their passage into circulation and transmigration into the tissues as well as tumor infiltration. It is emerging that chemokine receptors are differentially expressed by neutrophil subsets and they affect not only their recruitment but also their effector functions.Here we are resuming human and murine data suggesting that therapeutic modulation of neutrophil activity through the targeting of specific chemokines or chemokine receptors can improve their anti-tumoral properties.     

Chemokine receptors on dendritic cells promote autoimmune reactions

This paper presents a brief review of several lines of evidence suggesting that chemokine receptors on dendritic cells play an important role in breaking tolerance to self and in inducing autoimmunity. First, we have shown that an idiotypic self-antigen obtained from malignant murine lymphomas, when covalently linked to selected chemokines or defensins that interact with receptors on immature dendritic cells (iDCs), has the capacity to break tolerance to self and induce humoral or cell-mediated anti-tumor responses. Since unlinked antigens mixed with the same chemokines or defensins or antigens fused with a mutant ligand deficient in receptor-binding capacity were not immunogenic, we propose that delivery of an antigen coupled to a ligand for receptors on iDCs promotes the processing and subsequent presentation of the antigen, resulting in immunoadjuvant effects. In a second study, we observed that two of five aminoacyl tRNA synthetases (aaRSs) - which act as autoantigens to which some patients with myositis have autoantibodies - were chemotactic for activated monocytes, T cells, and iDCs. These aaRSs interacted with either CC chemokine receptor (CCR)5 or CCR3, as was shown by desensitization with chemokines and the response of cell lines transfected with the chemokine receptor. Presumably, these autoantigens therefore have the capacity to attract inflammatory cells, including iDCs, to infiltrate affected muscle cells. These observations suggest the hypothesis that antigens delivered to receptors on iDCs are potent immunogens capable of breaking self-tolerance to tumor antigens to induce autoimmune diseases.