耐热芽孢杆菌E2菌株纤维素酶基因克隆的研究

用质粒ｐＢＲ３２２作载体,大肠杆菌Ｅ．ｃｏｌｉ ＤＨ５αＦ’作受体,克隆到耐热孢杆菌Ｅ２菌株的羧甲基纤维素酶基因。重组质粒ＰＢＧ３从产生ＣＭＣａｓｅ的转化子中分离得到。克隆到的ＣＭＣａｓｅ基因位于４．０ｋｂＨｉｎｄⅠⅠⅠ片段上。功能状态ＣＭＣａｓｅ基因被亚克隆到２．４ｋｂＤＮＡ片段上。     

环状芽孢杆菌C-2几丁酶基因的克隆

环状芽孢杆菌（Ｂａｃｉｌｕｓｃｉｒｃｕｌａｎｓ）Ｃ２总ＤＮＡ经ＰｓｔＩ部分酶切后分离２～１０ｋｂ的片段,插入质粒ｐＵＣ１９的ＰｓｔＩ位点,转化大肠杆菌（Ｅｓｃｈｅｒｉｃｈｉａｃｏｌｉ）,利用几丁质平板从约８０００个重组子中筛选到一个几丁酶基因阳性克隆（命名为ｐＣＨＴ１）。用１２种限制酶对重组质粒进行的酶切分析表明,重组质粒中的插入片段长３０ｋｂ,其中各有一个ＫｐｎＩ,ＳａｃＩ和ＳｓｐＩ位点。把该克隆片段反向插入ｐＵＣ１９的ＰｓｔＩ位点所得到的重组子同样具有几丁酶基因表达活性,说明此片段含有一个完整的几丁酶基因,其自身的启动子能被大肠杆菌转录系统所识别。Ｓｏｕｔｈｅｒｎ杂交证实了该片段来自于Ｂ．ｃｉｒｃｕｌａｎｓＣ２基因组,且以单拷贝形式存在,它不能与来自于其它７株几丁酶产生菌的总ＤＮＡ杂交。     

D.radiodurans CatB基因的克隆及其在大肠杆菌中的表达

通过生物信息学方法从耐辐射奇球菌（Ｄ．ｒａｄｉｏｄｕｒａｎｓ）全基因组居库中查鼠并克隆了编码过氧化氢酶（Ｃａｒｔａｌａｓｅ,Ｃａｔ）的１６１１ｂｐ长ＣａｔＢ基因,将ＣａｔＢ基因连人ｐＫＫ２２３－３表达载体,转化Ｃａｔ酶链陷型大肠杆菌（Ｅ．ｃｏｌｉ ＵＭ２）。转化菌裂解液ＰＡＧＥ酶活性染色分析实物具有Ｃａｔ酶活性,电泳过移位置与ＣａｔＢ位置相符。Ｄ．ｒａｄｉｏｄｕｒａｎｓ ＣａｔＢ基因的表达可使Ｅ．     

α-乙酰乳酸脱羧酶的基因克隆及在大肠杆菌和酿酒酵母中的表达

以ｐＵＣ１９质粒为载体,以Ｅ．ｃｏｌｉ ＪＭ１０９为受体,构建了含α－乙酰乳酸脱羧酶（α－ＡＬＤＣ）基因的地衣芽孢杆菌Ｂａｃｉｌｌｕｓ ｌｉｃｈｅｎｉｆｏｒｍｉｓ ＡＳ１０１０６的基因文库,得到４８００个重组转化子中均含有４～１０ｋｂ的外源插入ＤＮＡ片段,从基因文库中筛选到６个阳性克隆,对其中１个克隆的α－乙酰乳酸脱羧酶基因片段进行亚克隆分析表明,该α－乙酰乳酸脱羧酶基因位于１．６ｋｂ的ＢａｍＨⅠ     

牛病毒性腹泻病毒基因组cDNA文库的构建

以牛病毒性腹泻病毒（ＢＶＤＶ）┥ｎＬ株的基因组ＲＮＡ为模板,经逆向转录酶作用,合成第一链ｃＤＮＡ,再以ＲＮａｄｓｅ／Ｈ与ＤＮＡ聚合酶Ｉ联合作用合成ｄｓｃＤＮＡ,并以ｄＣ同聚物尾化。ｐＵＣ８ＤＮＡ在Ｐｓｔ Ｉ酶解后,以ｄＧ同聚物尾化,两者退火构成重组质粒,转化到Ｅ．ｃｏｌｉ ＪＭ１０１受体菌中,另以γ－＾３２Ｐ－ＡＴＰ标记ＢＶＤＶ ＲＮＡ制备探针,通过菌落原位杂交筛选重组子。酶切分配表明重组质粒插入     

stNI同功酶限制 修饰系统基因的表达检测和定位分析

鉴定了Ｅ．ｃｏｌｉＨＢ１０１和ＪＭ１１０的部分遗传标记,作为受体菌分别用于ＢｓｔＮＩ同功酶限制－修饰系统中限制性内切酶（Ｒｅｓｔｒｉｃｔｉｏｎｅｎｄｏｎｕｃｌｅａｓｅ,简称Ｒ）基因和甲基化酶（Ｍｅｔｈｙｌａｓｅ,简称Ｍ）基因表达的检测。用外切酶ＩＩ单向删切含ＲＭ基因的ＤＮＡ片段,获得２３个缺失突变亚克隆。通过检测各亚克隆表达的Ｒ酶和Ｍ酶活性,将Ｒ和Ｍ基因分别定位在距克隆位点ＰｓｔＩ的０２→１４ｋｂ和１５→３．３ｋｂ范围内。分析表明：该系统属于Ｉ类限制修饰系统,两个基因受控于不同的启动子;该系统与Ｅ．Ｃｏｌｉ染色体编码的胞嘧啶ＤＮＡ甲基转移酶（Ｄｃｍ）的识别序列相同,后者的甲基化作用也能阻止Ｒ酶的切割。Ｒ＋Ｍ－的重组质粒对Ｄｃｍ＋和Ｄｃｍ－的宿主都是致死性的,这说明在进化过程中,与Ｒ基因紧密连锁的Ｍ基因对系统的存在至关重要     

枯草杆菌内切葡聚糖酶基因的克隆及表达

以质粒Ｐｕｃ１８为载体,从枯草杆菌（Ｂａｃｉｌｕｓｓｕｂｔｉｌｉｓ）ＤＢ１０４基因组中克隆到一个内切葡聚糖酶基因。限制酶切分析表明重组质粒中的插入片段为３.５ｋｂ,其中各含有一个ＥｃｏＲＩ,ＨｉｎｄⅢ和ＰｖｕⅡ位点。该插入片段含有一完整的内切葡聚糖酶基因,其自身启动子能被大肠杆菌转录系统所识别。当加入ｌａｃＺα基因启动子的诱导物ＩＰＴＧ后,内切葡聚糖酶表达量提高２.８倍。加入０.５％葡萄糖能抑制该基因的表达。该基因在大肠杆菌ＤＨ５αＦ′中表达的内切葡聚糖酶分布为：胞外６７.３％,胞间周质３.９％,胞内２８.８％。Ｓｏｕｔｈｅｒｎ杂交证实了该插入片段来自供体菌Ｂ．ＳｕｂｔｉｌｉｓＤＢ１０４。     

日本血吸虫26kD抗原基因在BCG中的表达

研究了外源基因日本血吸虫２６ｋＤ抗原（Ｓｊ２６ＧＳＴ）在卡介苗（ｂａｃｉｌｕｓＣａｌｍｅｔｅ－Ｇｕｅｒｉｎ,ＢＣＧ）、耻垢分枝杆菌（Ｍ．ｓｍｅｇｍａｔｉｓ）和大肠杆菌（Ｅ．ｃｏｌｉ）中的表达．运用重组ＤＮＡ和聚合酶链反应（ＰＣＲ）等分子生物学技术,以表达Ｓｊ２６ＧＳＴ的Ｅ．ｃｏｌｉｐＧＥＸ衍生质粒为模板,经ＰＣＲ得到编码Ｓｊ２６ＧＳＴ的全长ｃＤＮＡ片段．将其按正确的阅读框顺序,克隆到人结核杆菌热休克蛋白（ｈｅａｔｓｈｏｃｋｐｒｏｔｅｉｎ,ＨＳＰ）７０的启动子下游,再将ＨＳＰ７０启动子和Ｓｊ２６ＧＳＴ基因一起亚克隆到Ｅ．ｃｏｌｉ－分枝杆菌穿梭质粒ｐＢＣＧ－２０００中,得到Ｅ．ｃｏｌｉ－分枝杆菌穿梭表达质粒ｐＢＣＧ－Ｓｊ２６．ｐＢＣＧ－Ｓｊ２６电转化入ＢＣＧ和Ｍ．ｓｍｅｇｍａｔｉｓｍｃ２１５５中表达Ｓｊ２６ＧＳＴ抗原,所表达的天然重组Ｓｊ２６ＧＳＴ（ｒＳｊ２６ＧＳＴ）为可溶性蛋白,在ＳＤＳ－ＰＡＧＥ上分子量为２６ｋＤ处可见明显的表达蛋白带．其表达量分别占ＢＣＧ和Ｍ．ｓｍｅｇｍａｔｉｓ菌体总蛋白的１５％和１０％．可见,Ｓｊ２６ＧＳＴ基因能在ＢＣＧ中高效表达．     

一个高效表达、快速纯化大肠杆菌精氨酰-tRNA合成酶的新系统(英文)

编码大肠杆菌精氨酰ｔ Ｒ Ｎ Ａ 合成酶（ Ａｒｇ Ｒ Ｓ） 的基因ａｒｇ Ｓ 被克隆到ｐ Ｍ Ｆ Ｔ７５ 载体上。将此质粒转化的大肠杆菌 Ｊ Ｍ１０９（ Ｄ Ｅ３） 中, 该转化子粗抽液的比活是宿主菌的２ ５００ 倍。通过 Ｄ Ｅ Ａ Ｅ Ｓｅｐｈａｒｏｓｅ Ｃ Ｌ６ Ｂ Ｆａｓｔ Ｆｌｏｗ 和 Ｂｌｕｅ Ｓｅｐｈａｒｏｓｅ Ｃ Ｌ６ Ｂ两步柱层析在一天内即可将精氨酰ｔ Ｒ Ｎ Ａ 合成酶纯化至电泳一条带, 比活为３６ ０００ ｕ／ｍｇ , 总收率可达６９ ％ 。与以前报道的 Ａｒｇ Ｒ Ｓ的高表达质粒相比, 使用该重组质粒可以很方便地将昂贵的标记氨基酸高效地参入酶分子内。目前的研究结果表明,该新系统能够很方便地提供大量的更高比活的大肠杆菌精氨酰ｔ Ｒ Ｎ Ａ 合成酶以进行该酶的 Ｎ Ｍ Ｒ 和结晶学研究     

一个高效表达,快速纯化大肠杆菌精氨酰—tRNA合成酶的 …

编码大肠杆菌精氨酸－ｔＲＮＡ合成酶的基因ａｒｇＳ被克隆到ｐＭＦＴ７－５载体上。将此质粒转化的大肠 力ＪＭ１０９（ＤＥ３）中,该转化子粗抽液的比活是宿主菌的２５００倍。通过ＤＥＡＥ－Ｓｅｐｈａｒｏｓｅ ＣＬ－６Ｂ ＦａｓｔＦｌｏｗ和ＢｌｕｅＳｅｐｈａｒｏｓｅ ＣＬ－６Ｂ两步柱层析在一天内即可将精氨酰－ｔＲＮＡ合成酶纯化至电泳一条带,比活为３６０００ｕ／ｍｇ,总收率可达６９％。     

Cloning and sequencing of a Bacteroides ruminicola B(1)4 endoglucanase gene.

Bacteroides ruminicola B(1)4, a noncellulolytic rumen bacterium, produces an endoglucanase (carboxymethylcellulase [CMCase]) that is excreted into the culture supernatant. Cultures grown on glucose, fructose, maltose, mannose, and cellobiose had high specific activities of CMCase (greater than 3 mmol of reducing sugar per mg of protein per min), but its synthesis was repressed by sucrose. B. rumincola did not grow on either ball-milled or acid-swollen cellulose even though the CMCase could hydrolyze swollen cellulose. The CMCase gene was cloned into Escherichia coli, and its nucleotide sequence contained a single open reading frame coding for a protein of 40,481 daltons. The enzyme was overproduced in E. coli under the control of the tac promoter and purified to homogeneity. The N-terminal sequence, amino acid composition, and molecular weight of the purified enzyme were similar to the values predicted from the open reading frame of the DNA sequence. However, the CMCase present in B. ruminicola was found to have a monomer molecular weight of 88,000 by Western immunoblotting. This discrepancy appeared to have resulted from our having cloned only part of the CMCase gene into E. coli. The amino acid sequence of the CMCase showed homology to sequences of beta-glucanases from Ruminococcus albus and Clostridium thermocellum.     

枯草芽孢杆菌耐盐突变株proA基因克隆及proBA基因渗透压调节功能研究

利用TaKaRaLAPCRTM试剂盒扩增枯草芽孢杆菌 931 5 1耐盐突变株proA基因的未知下游序列。根据测序结果 ,设计引物 ,克隆出发菌株和突变株全长proBA基因。将出发菌株和突变株的proBA基因分别转化大肠杆菌JM83(proBA- ) ,均能够与其功能互补。SDS PAGE分析其表达产物 ,有两条分子量分别约为 4 0kD和 4 5kD的新蛋白带出现。测定 4种转化子 (分别含有出发菌株和突变株proB基因的大肠杆菌 1 1 2 5 2转化子及proBA基因的大肠杆菌JM83转化子 )的耐盐能力。发现含有突变株proB或proBA基因转化子的耐盐能力 ,均比相应的含有出发菌株proB或proBA基因的转化子高。另外含有出发菌株和突变株的proBA基因转化子的耐盐能力 ,也均比相应的仅含proB基因的转化子高 ,表明枯草芽孢杆菌的ProA比大肠杆菌的ProA更为有效。测定所有JM83转化子胞内自由脯氨酸 ,发现其含量随盐浓度的上升而提高 ,其中含突变菌株proBA基因的转化子提高更为显著     

Cloning and expression of a Bacillus cellulase gene in Escherichia coli

A Bacillus cellulase gene coding for carboxymethylcellulase (CMCase) has been cloned in Escherichia coli using pBR 322 as a vector. The gene was expressed independently of its orientation in the cloning vector showing enzyme activity 40 times greater than that produced by the original Bacillus species. The high production of CMCase in E. coli by the foreign gene did not impede growth of the host cells and the E. coli produced CMCase responded to various pH values and temperatures in the same way as that produced by the gene donor cells.     

Construction of a recombinant <Emphasis Type="Italic">Escherichia coli</Emphasis> JM109/A-68 for production of carboxymethylcellulase and comparison of its production with its wild type, <Emphasis Type="Italic">Bacillus velezensis</Emphasis> A-68 in a pilot-scale bioreactor

A gene encoding carboxymethylcellulase (CMCase) of Bacillus velezensis A-68 had been cloned in Escherichia coli JM109. Based on productivity and economic aspect, rice bran and ammonium chloride were chosen to be optimal carbon and nitrogen sources for production of CMCase by E. coli JM109/A-68. The optimal conditions for rice bran, ammonium chloride, and initial pH of medium for production of CMCase were established by the response surface methodology (RSM). The concentrations of four salts in the medium, K₂HPO₄, NaCl, MgSO₄·7H₂O, and (NH₄)₂SO₄, for production of CMCase also were optimized. The optimal temperatures for cell growth and production of CMCase were 37°C. The maximal production of CMCase by E. coli JM109/A-68 was 880.2 U/mL, which was 10.5 time higher than its wild type, B. velezensis A-68. The production of CMCase by E. coli JM109/A-68 was compared with that by B. velezensis A-68 in a 100 L pilot-scale bioreactor under the optimized conditions. The production of CMCase by E. coli JM109/A-68 was found to be the mixed-growth associated unlike the growthassociated production of CMCase by B. velezensis A-68.     

Cloning, sequencing, and expression of a xylanase gene from the anaerobic ruminal bacterium Butyrivibrio fibrisolvens.

A gene coding for xylanase activity, xynA, from the anaerobic ruminal bacterium Butyrivibrio fibrisolvens 49 was cloned into Escherichia coli JM83 by using plasmid pUC19. The gene was located on a 2.3-kilobase (kb) DNA insert composed of two adjacent EcoRI fragments of 1.65 and 0.65 kb. Expression of xylanase activity required parts of both EcoRI segments. In E. coli, the cloned xylanase enzyme was not secreted and remained cell associated. The enzyme exhibited no arabinosidase, cellulase, alpha-glucosidase, or xylosidase activity. The isoelectric point of the cloned protein was approximately 9.8, and optimal xylanase activity was obtained at pH 5.4. The nucleotide sequence of the 1,535-base-pair EcoRV-EcoRI segment from the B. fibrisolvens chromosome that included the xynA gene was determined. An open reading frame was found that encoded a 411-amino-acid-residue polypeptide of 46,664 daltons. A putative ribosome-binding site, promoter, and leader sequence were identified. Comparison of the XynA protein sequence with that of the XynA protein from alkalophilic Bacillus sp. strain C-125 revealed considerable homology, with 37% identical residues or conservative changes. The presence of the cloned xylanase gene in other strains of Butyrivibrio was examined by Southern hybridization. The cloned xylanase gene hybridized strongly to chromosomal sequences in only two of five closely related strains.     

大肠杆菌腺苷脱氨酶基因的克隆、表达与缺失

利用途径工程的基本原理,拟在大肠杆菌核苷酸代谢途径中构建腺苷（AR）转化为腺苷三磷酸（ATP）的新途径,故需使细胞内的腺苷脱氨酶基因（add）缺失。通过构建大肠杆菌MC4100　DNA的基因文库,筛选得到含腺苷脱氨酶基因的DNA片段。构建表达质粒pBD1和pBD2并实现了表达。在此基础上构建了add基因缺失的带卡那霉素抗性基因的线性52kb DNA分子,同时转化JM83、MC4100、BL21（DE3）。经遗传稳定性实验和DNA分子杂交鉴定,确认得到了来自JM83的两株add基因缺陷株J1和J2。再对菌株J1、pUC18／JM83、pBD1／JM83的细胞粗提液做腺苷脱氨酶的酶活鉴定比较,结果表明则没有腺苷脱氨酶活性,pBD1／JM83有比pUC18／JM83强的腺苷脱氨酶活性。     

Enhanced production of carboxymethylcellulase of a marine microorganism, Bacillus subtilis subsp. subtilis A-53 in a pilot-scaled bioreactor by a recombinant Escherichia coli JM109/A-53 from rice bran

A gene encoding the carboxymethylcellulase (CMCase) of a marine bacterium, Bacillus subtilis subsp. subtilis A-53, was cloned in Escherichia coli JMB109 and the recombinant strain was named as E. coli JMB109/A-53. The optimal conditions of rice bran, ammonium chloride, and initial pH of the medium for cell growth, extracted by Design Expert Software based on response surface methodology, were 100.0 g/l, 7.5 g/l, and 7.0, respectively, whereas those for production of CMCase were 100.0 g/l, 7.5 g/l, and 8.0. The optimal temperatures for cell growth and the production of CMCase by E. coli JM109/A-53 were found to be and 40 and 35 °C, respectively. The optimal agitation speed and aeration rate of a 7 l bioreactor for cell growth were 400 rpm and 1.5 vvm, whereas those for production of CMCase were 400 rpm and 0.5 vvm. The optimal inner pressure for cell growth was 0.06 MPa, which was the same as that for production of CMCase. The production of CMCase by E. coli JM109/A-53 under optimized conditions was 880.2 U/ml, which was 2.9 times higher than that before optimization. In this study, rice bran and ammonium chloride were developed as carbon and nitrogen source for production of CMCase by a recombinant E. coli JM109/A-53 and the productivity of E. coli JM109/A-53 was 5.9 times higher than that of B. subtilis subp. subtilis A-53.     

Cloning and expression of an agarase gene from a marine bacterium Pseudomonas sp. w7

Two different agarase genes (pSW1, pSW3) were cloned from a marine bacterium Pseudomonas sp. W7 into E. coli JM83 using the multicopy plasmid vector pUC19. Two cloned strains of recombinant E. coli which showed the agarase activity were obtained and were named E. coli JM83/pSW1 and E. coli JM83/pSW3. These strains had the insert fragment of 3.7kb and 3.0kb, respectively. The N-terminal amino acid sequence of the agarase containing the recombinant plasmid pSW3 was determined and the sequence did not show homology to any other known agarases. The optimum pH and temperature of the agarases from the cloned strains, E. coli JM83/pSW1 and pSW3, were 6.0, 7.0 and 30°C, 40°C, respectively.     

Cloning and expression in Escherichia coli of the gene for 10-formyltetrahydrofolate synthetase from Clostridium acidiurici ("Clostridium acidi-urici")

The gene for 10-formyltetrahydrofolate synthetase (EC 6.3.4.3) from the purinolytic anaerobic bacterium Clostridium acidiurici ("Clostridium acidi-urici") was cloned into Escherichia coli JM83 with plasmid pUC8. A C. acidiurici genomic library was prepared in E. coli from a partial Sau3A digest and screened with antibody against the synthetase. Of 10 antibody-positive clones, 1 expressed a high level of synthetase activity. Sodium dodecyl sulfate-polyacrylamide gel electrophoresis and immunoblot analysis demonstrated that the protein synthesized in E. coli had the same subunit molecular weight as the C. acidiurici enzyme. The gene was located on an 8.3-kilobase genomic insert and appeared to be transcribed from its own promoter. Analysis of genomic digests with a fragment of the synthetase gene indicated that one copy of the gene was present in the C. acidiurici chromosome.     

Cloning and sequencing of the celA gene encoding endoglucanase A of Butyrivibrio fibrisolvens strain A46

Genomic DNA from Butyrivibrio fibrisolvens strain A46 was digested with EcoRI and ligated into lambda gt11. Two recombinant phages isolated from the gene bank hydrolysed carboxymethylcellulose and were shown to contain the same 2.3 kb EcoRI restriction fragment, which was cloned into pUC12 to generate pBA46. Escherichia coli JM83 harbouring pBA46 expressed an endoglucanase (EGA) which hydrolysed a range of other substrates including barley beta-glucan, Avicel, filter paper and p-nitrophenyl beta-D-cellobioside. Nucleotide sequencing of the B. fibrisolvens strain A46 DNA cloned in pBA46 revealed a single open reading frame (ORF) of 1296 bp, encoding a protein of 48,863 Da. Confirmation that the ORF coded for EGA was obtained by comparing the N-terminal sequence of the purified endoglucanase with that deduced from the nucleotide sequence. EGA contains a typical prokaryotic signal peptide at its N-terminus and shows some homology with the Bacillus family of cellulases. The enzyme does not contain distinct functional domains, which are prevalent in cellulases from Pseudomonas fluorescens subsp. cellulosa and Cellulomonas fimi.