共查询到20条相似文献，搜索用时 11 毫秒
1.
Eastern oyster (Crassostrea virginica) habitat is increasingly being restored for the ecosystem services it provides rather than solely as a fishery resource. Community‐based projects with the goal of ecological restoration have successfully constructed oyster reefs; however, the habitat benefits of these restoration efforts are usually not assessed or reported. In this study, we examined oyster habitat development at five community‐based oyster restoration sites in South Carolina using oyster population parameters, resident fauna densities, and sedimentation (percent sediment coverage) as assessment metrics. All sites included multiple‐aged reefs (1–3 years old) at the time of the fall 2004 sampling. Resident crabs and mussels were abundant at all five sites and crab assemblages were related to the size structure of the oyster microhabitat. Scorched mussel (Brachidontes exustus) abundances were most frequently correlated with oyster and other resident species abundances. Associations among oysters and resident crabs and mussels were not evident when analyses were conducted with higher level taxonomic groupings (e.g., total number of crabs, mussels, or oysters), indicating that species‐level identifications improve our understanding of interactions among reef inhabitants and oyster populations. Community‐based restoration sites in South Carolina provide habitat for mussels and resident crabs, in some cases in the absence of dense populations of relatively large oysters. Monitoring programs that neglect species‐level identifications and counts of mussels and crabs may underestimate the successful habitat provision that can arise independent of large, dense oyster assemblages. 相似文献
2.
3.
Populations may respond to environmental heterogeneity via evolutionary divergence or phenotypic plasticity. While evolutionary divergence occurs through DNA sequence differences among populations, plastic divergence among populations may be generated by changes in the epigenome. Here, we present the results of a genome‐wide comparison of DNA methylation patterns and genetic structure among four populations of Eastern oyster (Crassostrea virginica) in the northern Gulf of Mexico. We used a combination of restriction site‐associated DNA sequencing (RADseq) and reduced representation bisulfite sequencing (RRBS) to explore population structure, gene‐wide averages of FST, and DNA methylation differences between oysters inhabiting four estuaries with unique salinity profiles. This approach identified significant population structure despite a moderately low FST (0.02) across the freshwater boundary of the Mississippi river, a finding that may reflect recent efforts to restore oyster stock populations. Divergence between populations in CpG methylation was greater than for divergence in FST, likely reflecting environmental effects on DNA methylation patterns. Assessment of CpG methylation patterns across all populations identified that only 26% of methylated DNA was intergenic; and, only 17% of all differentially methylated regions (DMRs) were within these same regions. DMRs within gene bodies between sites were associated with genes known to be involved in DNA damage repair, ion transport, and reproductive timing. Finally, when assessing the correlation between genomic variation and DNA methylation between these populations, we observed population‐specific DNA methylation profiles that were not directly associated with single nucleotide polymorphisms or broader gene‐body mean FST trends. Our results suggest that C. virginica may use DNA methylation to generate environmentally responsive plastic phenotypes and that there is more divergence in methylation than divergence in allele frequencies. 相似文献
4.
Amber D. Stubler Heather Robertson Henry J. Styron John M. Carroll Christopher M. Finelli 《Invertebrate Biology》2017,136(4):365-378
Boring sponges belonging to the family Clionaidae have become a destructive nuisance to eastern oyster (Crassostrea virginica) aquaculture and restoration efforts in the southeastern USA. Clionaid sponges colonize the inner layers of oyster shells and remove carbonate material, compromising the quality and marketability of the oyster; however, relatively little is known about reproduction and recruitment of these sponges. Using histological techniques, reproductive activity of clionaid sponges was monitored at two sites (Cedar Island and Masonboro Sound) in coastal North Carolina. Sponge recruitment to limestone tiles (5×5 cm), oyster shells, and clam shells was monitored in 2013 and 2014; recruitment to the limestone tiles was statistically higher than recruitment to clam or oyster shells. Overall, seasonal patterns in reproduction and recruitment of clionaid sponges were generally similar at the two sites. Three species of clionaid sponge were found during field sampling (Cliona celata, C. lobata, and C. truitti), and reproductive activity (eggs and spermatocysts) of these species was observed from April to November, with peak reproduction occurring from June to September for C. lobata and from August to September for C. celata. Recruitment peaked in late summer/early fall. Additionally, the relationship between environmental conditions (temperature, salinity, dissolved oxygen, pH, and chlorophyll a) and clionaid recruitment was explored using a regression model. At Cedar Island, the best‐fit model included salinity and dissolved oxygen, while the best‐fit model at Masonboro Sound included temperature, pH, and salinity. The data from this study show that the primary reproduction and recruitment pulses occur in the fall for local clionaids, and thus mitigation strategies should be applied in the late fall or winter to minimize infestations. 相似文献
5.
Joel D. Anderson William J. Karel Christopher E. Mace Brian L. Bartram Matthew P. Hare 《Ecology and evolution》2014,4(9):1671-1685
The eastern oyster (Crassostrea virginica Gmelin) is an economically and ecologically valuable marine bivalve occurring in the Gulf of Mexico. This study builds upon previous research that identified two divergent populations of eastern oysters in the western Gulf of Mexico. Allelic and genotypic patterns from 11 microsatellite markers were used to assess genetic structure and migration between the previously described oyster populations in Texas. The main findings are as follows: (1) there are two distinct populations (FST = 0.392, P < 0.001) of oysters that overlap in the Corpus Christi/Aransas Bay estuarine complex in Texas, (2) the distribution of genotypes among individuals in the contact zone suggests limited hybridization between populations, (3) the variables of salinity, temperature, dissolved oxygen, turbidity and depth are not correlated with allele frequencies on reefs in the contact zone or when analyzed across Texas, and (4) there is little evidence of directional selection acting on the loci assayed here, although patterns at four markers suggested the influence of balancing selection based on outlier analyses. These results are consistent with long‐term historical isolation between populations, followed by secondary contact. Recent hydrological changes in the area of secondary contact may be promoting migration in areas that were previously inhospitable to eastern oysters, and observed differences in the timing of spawning may limit hybridization between populations. Comparison of these findings with the results of an earlier study of oysters in Texas suggests that the secondary contact zone has shifted approximately 27 km north, in as little as a 23‐year span. 相似文献
6.
For marine fish and invertebrates, larval dispersal plays a critical role in determining connections among source and sink habitats, and the lack of a predictive understanding of larval dispersal is a fundamental obstacle to the development of spatially explicit restoration plans for marine populations. We investigated larval dispersal patterns of eastern oyster in an estuary along the Northern Gulf of Mexico under different simulation scenarios of tidal amplitude and phase, river discharge, wind direction, and larval vertical migration, using a coupled biophysical transport model. We focused on the dispersal of larvae released from the commercially exploited (Cedar Point, CP) and non‐exploited (Bon Secour Bay, BSB) oyster populations. We found that high flushing rates through the dominant inlet prevented larval exchange between the commercially exploited and non‐exploited populations, resulting in negligible connectivity between them. Variations in tidal amplitude, river discharge and wind direction played a more important role in the amount of larvae retained in Mobile Bay when they are released from CP than from BSB. Under most of the scenarios, larvae from BSB were retained around the spawning area, while larvae from CP showed a predominant westward flow. Net sinking behavior of late‐stage larvae increased larval retention in the bay, but physical transport showed a higher impact in the amount of larvae retained. These findings have enhanced our understanding of larval dispersal of eastern oyster in a wide, shallow estuarine system, and been used to establish spatially explicit strategies for oyster restoration in the Mobile Bay system, Alabama. 相似文献
7.
Joseph J. Baustian Irving A. Mendelssohn Mark W. Hester 《Global Change Biology》2012,18(11):3377-3382
Rising sea levels threaten the sustainability of coastal wetlands around the globe, thus understanding how increased inundation alters the elevation change mechanisms in these systems is increasingly important. Typically, the ability of coastal marshes to maintain their position in the intertidal zone depends on the accumulation of both organic and inorganic materials, so one, if not both, of these processes must increase to keep pace with rising seas, assuming all else constant. To determine the importance of vegetation in these processes, we measured elevation change and surface accretion over a 4‐year period in recently subsided, unvegetated marshes, resulting from drought‐induced marsh dieback, in paired planted and unplanted plots. We compared soil and vegetation responses in these plots with paired reference plots that had neither experienced dieback nor subsidence. All treatments (unvegetated, planted, and reference) were replicated six times. The recently subsided areas were 6–10 cm lower in elevation than the reference marshes at the beginning of the study; thus, mean water levels were 6–10 cm higher in these areas vs. the reference sites. Surface accretion rates were lowest in the unplanted plots at 2.3 mm yr?1, but increased in the presence of vegetation to 16.4 mm yr?1 in the reference marsh and 26.1 mm yr?1 in the planted plots. The rates of elevation change were also bolstered by the presence of vegetation. The unplanted areas decreased in elevation by 9.4 mm yr?1; whereas the planted areas increased in elevation by 13.3 mm yr?1, and the reference marshes increased by 3.5 mm yr?1. These results highlight the importance of vegetation in the accretionary processes that maintain marsh surface elevation within the intertidal zone, and provide evidence that coastal wetlands may be able to keep pace with a rising sea in certain situations. 相似文献
8.
To avoid submergence during sea‐level rise, coastal wetlands build soil surfaces vertically through accumulation of inorganic sediment and organic matter. At climatic boundaries where mangroves are expanding and replacing salt marsh, wetland capacity to respond to sea‐level rise may change. To compare how well mangroves and salt marshes accommodate sea‐level rise, we conducted a manipulative field experiment in a subtropical plant community in the subsiding Mississippi River Delta. Experimental plots were established in spatially equivalent positions along creek banks in monospecific stands of Spartina alterniflora (smooth cordgrass) or Avicennia germinans (black mangrove) and in mixed stands containing both species. To examine the effect of disturbance on elevation dynamics, vegetation in half of the plots was subjected to freezing (mangrove) or wrack burial (salt marsh), which caused shoot mortality. Vertical soil development was monitored for 6 years with the surface elevation table‐marker horizon system. Comparison of land movement with relative sea‐level rise showed that this plant community was experiencing an elevation deficit (i.e., sea level was rising faster than the wetland was building vertically) and was relying on elevation capital (i.e., relative position in the tidal frame) to survive. Although Avicennia plots had more elevation capital, suggesting longer survival, than Spartina or mixed plots, vegetation type had no effect on rates of accretion, vertical movement in root and sub‐root zones, or net elevation change. Thus, these salt marsh and mangrove assemblages were accreting sediment and building vertically at equivalent rates. Small‐scale disturbance of the plant canopy also had no effect on elevation trajectories—contrary to work in peat‐forming wetlands showing elevation responses to changes in plant productivity. The findings indicate that in this deltaic setting with strong physical influences controlling elevation (sediment accretion, subsidence), mangrove replacement of salt marsh, with or without disturbance, will not necessarily alter vulnerability to sea‐level rise. 相似文献
9.
《Evolutionary Applications》2017,10(4):338-347
The consequences of emerging marine diseases on the evolutionary trajectories of affected host populations in the marine realm are largely unexplored. Evolution in response to natural selection depends on the genetic variation of the traits under selection and the interaction of these traits with the environment (GxE). However, in the case of diseases, pathogen genotypes add another dimension to this interaction. Therefore, the study of disease resistance needs to be extended to the interaction of host genotype, pathogen genotype and environment (GxGxE). In this study, we used a full‐sib breeding design crossing two genetically differentiated populations of the Pacific oyster Crassostrea gigas (Thunberg, 1793), to determine the influence of host genotype, pathogen genotype and temperature on disease resistance. Based on a controlled infection experiment on two early life stages, that is, D‐larvae and Pediveliger larvae at elevated and ambient water temperatures, we estimated disease resistance to allopatric and sympatric Vibrio sp. by measuring survival and growth within and between genetically differentiated oyster populations. In both populations, survival was higher upon infection with sympatric Vibrio sp., indicating that disease resistance has a genetic basis and is dependent on host genotype. In addition, we observed a significant GxGxE effect in D‐larvae, where contrary to expectations, disease resistance was higher at warm than at cold temperatures. Using thermal reaction norms, we could further show that disease resistance is an environment dependent trait with high plasticity, which indicates the potential for a fast acclimatization to changing environmental conditions. These population‐specific reaction norms disappeared in hybrid crosses between both populations which demonstrates that admixture between genetically differentiated populations can influence GxGxE interactions on larger scales. 相似文献
10.
Eric W. Seabloom Peter Ruggiero Sally D. Hacker Jeremy Mull Phoebe Zarnetske 《Global Change Biology》2013,19(3):824-832
The world's coastal habitats are critical to human well‐being, but are also highly sensitive to human habitat alterations and climate change. In particular, global climate is increasing sea levels and potentially altering storm intensities, which may result in increased risk of flooding in coastal areas. In the Pacific Northwest (USA), coastal dunes that protect the coast from flooding are largely the product of a grass introduced from Europe over a century ago (Ammophila arenaria). An introduced congener (A. breviligulata) is displacing A. arenaria and reducing dune height. Here we quantify the relative exposure to storm‐wave induced dune overtopping posed by the A. breviligulata invasion in the face of projected multi‐decadal changes in sea level and storm intensity. In our models, altered storm intensity was the largest driver of overtopping extent, however the invasion by A. breviligulata tripled the number of areas vulnerable to overtopping and posed a fourfold larger exposure than sea‐level rise over multi‐decadal time scales. Our work demonstrates the importance of a transdisciplinary approach that draws on insights from ecology, geomorphology, and civil engineering to assess the vulnerability of ecosystem services in light of global change. 相似文献
11.
12.
Benjamin Paul Neal Adi Khen Tali Treibitz Oscar Beijbom Grace O'Connor Mary Alice Coffroth Nancy Knowlton David Kriegman B. Greg Mitchell David I. Kline 《Ecology and evolution》2017,7(5):1339-1353
Massive coral bleaching events associated with high sea surface temperatures are forecast to become more frequent and severe in the future due to climate change. Monitoring colony recovery from bleaching disturbances over multiyear time frames is important for improving predictions of future coral community changes. However, there are currently few multiyear studies describing long‐term outcomes for coral colonies following acute bleaching events. We recorded colony pigmentation and size for bleached and unbleached groups of co‐located conspecifics of three major reef‐building scleractinian corals (Orbicella franksi, Siderastrea siderea, and Stephanocoenia michelini; n = 198 total) in Bocas del Toro, Panama, during the major 2005 bleaching event and then monitored pigmentation status and changes live tissue colony size for 8 years (2005–2013). Corals that were bleached in 2005 demonstrated markedly different response trajectories compared to unbleached colony groups, with extensive live tissue loss for bleached corals of all species following bleaching, with mean live tissue losses per colony 9 months postbleaching of 26.2% (±5.4 SE) for O. franksi, 35.7% (±4.7 SE) for S. michelini, and 11.2% (±3.9 SE) for S. siderea. Two species, O. franksi and S. michelini, later recovered to net positive growth, which continued until a second thermal stress event in 2010. Following this event, all species again lost tissue, with previously unbleached colony species groups experiencing greater declines than conspecific sample groups, which were previously bleached, indicating a possible positive acclimative response. However, despite this beneficial effect for previously bleached corals, all groups experienced substantial net tissue loss between 2005 and 2013, indicating that many important Caribbean reef‐building corals will likely suffer continued tissue loss and may be unable to maintain current benthic coverage when faced with future thermal stress forecast for the region, even with potential benefits from bleaching‐related acclimation. 相似文献
13.
Understanding how the density and spatial arrangement of invaders is critical to developing management strategies of pest species. The Pacific oyster, Crassostrea gigas, has been translocated around the world for aquaculture and in many instances has established wild populations. Relative to other species of bivalve, it displays rapid suspension feeding, which may cause mortality of pelagic invertebrate larvae. We compared the effect on settlement of Sydney rock oyster, Saccostrea glomerata, larvae of manipulating the spatial arrangement and density of native S. glomerata, and non‐native C. gigas. We hypothesized that while manipulations of dead oysters would reveal the same positive relationship between attachment surface area and S. glomerata settlement between the two species, manipulations of live oysters would reveal differing density‐dependent effects between the native and non‐native oyster. In the field, whether oysters were live or dead, more larvae settled on C. gigas than S. glomerata when substrate was arranged in monospecific clumps. When, however, the two species were interspersed, there were no differences in larval settlement between them. By contrast, in aquaria simulating a higher effective oyster density, more larvae settled on live S. glomerata than C. gigas. When C. gigas was prevented from suspension feeding, settlement of larvae on C. gigas was enhanced. By contrast, settlement was similar between the two species when dead. While the presently low densities of the invasive oyster C. gigas may enhance S. glomerata larval settlement in east Australian estuaries, future increases in densities could produce negative impacts on native oyster settlement. Synthesis and applications: Our study has shown that both the spatial arrangement and density of invaders can influence their impact. Hence, management strategies aimed at preventing invasive populations reaching damaging sizes should not only consider the threshold density at which impacts exceed some acceptable limit, but also how patch formation modifies this. 相似文献
14.
15.
J. W. Kijas A. P. Gutierrez R. D. Houston S. McWilliam T. P. Bean K. Soyano J. E. Symonds N. King C. Lind P. Kube 《Animal genetics》2019,50(6):686-694
The recent development of Pacific oyster (Crassostrea gigas) SNP genotyping arrays has allowed detailed characterisation of genetic diversity and population structure within and between oyster populations. It also raises the potential of harnessing genomic selection for genetic improvement in oyster breeding programmes. The aim of this study was to characterise a breeding population of Australian oysters through genotyping and analysis of 18 027 SNPs, followed by comparison with genotypes of oyster sampled from Europe and Asia. This revealed that the Australian populations had similar population diversity (HE) to oysters from New Zealand, the British Isles, France and Japan. Population divergence was assessed using PCA of genetic distance and revealed that Australian oysters were distinct from all other populations tested. Australian Pacific oysters originate from planned introductions sourced from three Japanese populations. Approximately 95% of these introductions were from geographically, and potentially genetically, distinct populations from the Nagasaki oysters assessed in this study. Finally, in preparation for the application of genomic selection in oyster breeding programmes, the strength of LD was evaluated and subsets of loci were tested for their ability to accurately infer relationships. Weak LD was observed on average; however, SNP subsets were shown to accurately reconstitute a genomic relationship matrix constructed using all loci. This suggests that low‐density SNP panels may have utility in the Australian population tested, and the findings represent an important first step towards the design and implementation of genomic approaches for applied breeding in Pacific oysters. 相似文献
16.
Sea level rise elicits short‐ and long‐term changes in coastal plant communities by altering the physical conditions that affect ecosystem processes and species distributions. While the effects of sea level rise on salt marshes and mangroves are well studied, we focus on its effects on coastal islands of freshwater forest in Florida's Big Bend region, extending a dataset initiated in 1992. In 2014–2015, we evaluated tree survival, regeneration, and understory composition in 13 previously established plots located along a tidal creek; 10 plots are on forest islands surrounded by salt marsh, and three are in continuous forest. Earlier studies found that salt stress from increased tidal flooding prevented tree regeneration in frequently flooded forest islands. Between 1992 and 2014, tidal flooding of forest islands increased by 22%–117%, corresponding with declines in tree species richness, regeneration, and survival of the dominant tree species, Sabal palmetto (cabbage palm) and Juniperus virginiana (southern red cedar). Rates of S. palmetto and J. virginiana mortality increased nonlinearly over time on the six most frequently flooded islands, while salt marsh herbs and shrubs replaced forest understory vegetation along a tidal flooding gradient. Frequencies of tidal flooding, rates of tree mortality, and understory composition in continuous forest stands remained relatively stable, but tree regeneration substantially declined. Long‐term trends identified in this study demonstrate the effect of sea level rise on spatial and temporal community reassembly trajectories that are dynamically re‐shaping the unique coastal landscape of the Big Bend. 相似文献
17.
Lisa M. Schile John C. Callaway Katharine N. Suding N. Maggi Kelly 《Ecology and evolution》2017,7(4):1276-1285
Climate change impacts, such as accelerated sea‐level rise, will affect stress gradients, yet impacts on competition/stress tolerance trade‐offs and shifts in distributions are unclear. Ecosystems with strong stress gradients, such as estuaries, allow for space‐for‐time substitutions of stress factors and can give insight into future climate‐related shifts in both resource and nonresource stresses. We tested the stress gradient hypothesis and examined the effect of increased inundation stress and biotic interactions on growth and survival of two congeneric wetland sedges, Schoenoplectus acutus and Schoenoplectus americanus. We simulated sea‐level rise across existing marsh elevations and those not currently found to reflect potential future sea‐level rise conditions in two tidal wetlands differing in salinity. Plants were grown individually and together at five tidal elevations, the lowest simulating an 80‐cm increase in sea level, and harvested to assess differences in biomass after one growing season. Inundation time, salinity, sulfides, and redox potential were measured concurrently. As predicted, increasing inundation reduced biomass of the species commonly found at higher marsh elevations, with little effect on the species found along channel margins. The presence of neighbors reduced total biomass of both species, particularly at the highest elevation; facilitation did not occur at any elevation. Contrary to predictions, we documented the competitive superiority of the stress tolerator under increased inundation, which was not predicted by the stress gradient hypothesis. Multifactor manipulation experiments addressing plant response to accelerated climate change are integral to creating a more realistic, valuable, and needed assessment of potential ecosystem response. Our results point to the important and unpredicted synergies between physical stressors, which are predicted to increase in intensity with climate change, and competitive forces on biomass as stresses increase. 相似文献
18.
S. Lapègue E. Harrang S. Heurtebise E. Flahauw C. Donnadieu P. Gayral M. Ballenghien L. Genestout L. Barbotte R. Mahla P. Haffray C. Klopp 《Molecular ecology resources》2014,14(4):820-830
Use of SNPs has been favoured due to their abundance in plant and animal genomes, accompanied by the falling cost and rising throughput capacity for detection and genotyping. Here, we present in vitro (obtained from targeted sequencing) and in silico discovery of SNPs, and the design of medium‐throughput genotyping arrays for two oyster species, the Pacific oyster, Crassostrea gigas, and European flat oyster, Ostrea edulis. Two sets of 384 SNP markers were designed for two Illumina GoldenGate arrays and genotyped on more than 1000 samples for each species. In each case, oyster samples were obtained from wild and selected populations and from three‐generation families segregating for traits of interest in aquaculture. The rate of successfully genotyped polymorphic SNPs was about 60% for each species. Effects of SNP origin and quality on genotyping success (Illumina functionality Score) were analysed and compared with other model and nonmodel species. Furthermore, a simulation was made based on a subset of the C. gigas SNP array with a minor allele frequency of 0.3 and typical crosses used in shellfish hatcheries. This simulation indicated that at least 150 markers were needed to perform an accurate parental assignment. Such panels might provide valuable tools to improve our understanding of the connectivity between wild (and selected) populations and could contribute to future selective breeding programmes. 相似文献
19.
Jani T.I. Tanzil Barbara E. Brown Richard P. Dunne Jen N. Lee Jaap A. Kaandorp Peter A. Todd 《Global Change Biology》2013,19(10):3011-3023
This study reports the first well‐replicated analysis of continuous coral growth records from warmer water reefs (mean annual sea surface temperatures (SST) >28.5 °C) around the Thai–Malay Peninsula in Southeast Asia. Based on analyses of 70 colonies sampled from 15 reefs within six locations, region‐wide declines in coral calcification rate (ca. 18.6%), linear extension rate (ca. 15.4%) and skeletal bulk density (ca. 3.9%) were observed over a 31‐year period from 1980 to 2010. Decreases in calcification and linear extension rates were observed at five of the six locations and ranged from ca. 17.2–21.6% and ca. 11.4–19.6%, respectively, whereas decline in skeletal bulk density was a consequence of significant reductions at only two locations (ca. 6.9% and 10.7%). A significant link between region‐wide growth rates and average annual SST was found, and Porites spp. demonstrated a high thermal threshold of ca. 29.4 °C before calcification rates declined. Responses at individual locations within the region were more variable with links between SST and calcification rates being significant at only four locations. Rates of sea temperature warming at locations in the Andaman Sea (Indian Ocean) (ca. 1.3 °C per decade) were almost twice those in the South China Sea (Pacific Ocean) (ca. 0.7 °C per decade), but this was not reflected in the magnitude of calcification declines at corresponding locations. Considering that massive Porites spp. are major reef builders around Southeast Asia, this region‐wide growth decline is a cause for concern for future reef accretion rates and resilience. However, this study suggests that the future rates and patterns of change within the region are unlikely to be uniform or dependent solely on the rates of change in the thermal environment. 相似文献